Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Npcd-201ENSMUST00000023060 1162 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
Scn11aQ9R053 A330070K13Rik-201ENSMUST00000063656 633 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Scn11aQ9R053 Hrk-201ENSMUST00000054836 5382 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Scn11aQ9R053 Slc25a20-201ENSMUST00000035222 1783 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Scn11aQ9R053 Impdh1-210ENSMUST00000162739 2471 ntTSL 5 BASIC19.95■□□□□ 0.78
Scn11aQ9R053 Cdca7-201ENSMUST00000102691 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Scn11aQ9R053 Erich2-203ENSMUST00000134607 1659 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
Scn11aQ9R053 Gm29514-202ENSMUST00000186665 2214 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Scn11aQ9R053 Mier2-212ENSMUST00000172158 1400 ntTSL 5 BASIC19.95■□□□□ 0.78
Scn11aQ9R053 Nat9-203ENSMUST00000103040 1204 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Scn11aQ9R053 Nat9-204ENSMUST00000103041 953 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
Scn11aQ9R053 Gm13830-201ENSMUST00000124378 417 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Scn11aQ9R053 Gm14641-201ENSMUST00000136486 452 ntTSL 3 BASIC19.95■□□□□ 0.78
Scn11aQ9R053 Sec61g-206ENSMUST00000166950 754 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Scn11aQ9R053 Sec61g-207ENSMUST00000178855 779 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Scn11aQ9R053 Gm28051-201ENSMUST00000179306 445 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
Scn11aQ9R053 Dcdc2c-201ENSMUST00000020963 1041 ntTSL 5 BASIC19.95■□□□□ 0.78
Scn11aQ9R053 Gm45890-204ENSMUST00000212356 545 ntTSL 2 BASIC19.95■□□□□ 0.78
Scn11aQ9R053 Zkscan6-202ENSMUST00000071465 2270 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Scn11aQ9R053 Mff-211ENSMUST00000161648 1715 ntTSL 5 BASIC19.95■□□□□ 0.78
Scn11aQ9R053 Efemp2-204ENSMUST00000165485 1557 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Scn11aQ9R053 Acot1-201ENSMUST00000168120 2272 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Scn11aQ9R053 Rfesd-203ENSMUST00000179078 1436 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Scn11aQ9R053 Dohh-201ENSMUST00000072751 1444 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Scn11aQ9R053 Hoxc4-202ENSMUST00000165375 2121 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Scn11aQ9R053 Foxc1-201ENSMUST00000062292 5844 ntAPPRIS P1 BASIC19.94■□□□□ 0.78
Scn11aQ9R053 Hnrnpa1l2-ps-201ENSMUST00000129154 964 ntBASIC19.94■□□□□ 0.78
Scn11aQ9R053 Krtcap3-208ENSMUST00000201937 889 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
Scn11aQ9R053 Gm37811-201ENSMUST00000192416 2601 ntBASIC19.94■□□□□ 0.78
Scn11aQ9R053 Taf6l-213ENSMUST00000189739 1794 ntTSL 5 BASIC19.94■□□□□ 0.78
Scn11aQ9R053 Suz12-206ENSMUST00000163272 4303 ntAPPRIS ALT2 TSL 5 BASIC19.94■□□□□ 0.78
Scn11aQ9R053 Coro1a-201ENSMUST00000032949 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Scn11aQ9R053 Ino80e-203ENSMUST00000106343 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Scn11aQ9R053 Psen2-205ENSMUST00000111108 1997 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
Scn11aQ9R053 Gm12216-201ENSMUST00000117316 1152 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
Scn11aQ9R053 Nabp2-204ENSMUST00000166608 979 ntTSL 5 BASIC19.93■□□□□ 0.78
Scn11aQ9R053 Dpf3-205ENSMUST00000177801 1092 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Scn11aQ9R053 Gm27702-201ENSMUST00000184512 56 ntBASIC19.93■□□□□ 0.78
Scn11aQ9R053 AV026068-207ENSMUST00000187718 400 ntTSL 5 BASIC19.93■□□□□ 0.78
Scn11aQ9R053 Nudt16l1-201ENSMUST00000050881 1269 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Scn11aQ9R053 Methig1-201ENSMUST00000075675 1029 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Scn11aQ9R053 Gne-202ENSMUST00000102936 2920 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Scn11aQ9R053 Gm15690-201ENSMUST00000128728 432 ntTSL 3 BASIC19.93■□□□□ 0.78
Scn11aQ9R053 Scpep1os-201ENSMUST00000139592 811 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Scn11aQ9R053 Gm13431-203ENSMUST00000147012 388 ntTSL 2 BASIC19.93■□□□□ 0.78
Scn11aQ9R053 2210408F21Rik-212ENSMUST00000152157 490 ntTSL 2 BASIC19.93■□□□□ 0.78
Scn11aQ9R053 Hint3-203ENSMUST00000161074 875 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Scn11aQ9R053 Mfap2-203ENSMUST00000166376 890 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
Scn11aQ9R053 9530052E02Rik-201ENSMUST00000180750 949 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Scn11aQ9R053 Gm27867-201ENSMUST00000184778 125 ntBASIC19.93■□□□□ 0.78
Scn11aQ9R053 Hmgb1-rs17-201ENSMUST00000210634 972 ntBASIC19.93■□□□□ 0.78
Scn11aQ9R053 Nek4-204ENSMUST00000226833 1252 ntAPPRIS ALT2 BASIC19.93■□□□□ 0.78
Scn11aQ9R053 Eif5a-203ENSMUST00000071026 1286 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Scn11aQ9R053 Rpl27-201ENSMUST00000077856 614 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Scn11aQ9R053 Hsf5-201ENSMUST00000093956 4158 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
Scn11aQ9R053 Tgfb1i1-205ENSMUST00000165667 1812 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Scn11aQ9R053 Adprh-201ENSMUST00000002923 1583 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Scn11aQ9R053 Hist1h1c-201ENSMUST00000040914 1560 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
Scn11aQ9R053 Grk6-202ENSMUST00000099482 2169 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
Scn11aQ9R053 9330160F10Rik-201ENSMUST00000101007 2766 ntBASIC19.92■□□□□ 0.78
Scn11aQ9R053 Sytl3-201ENSMUST00000097430 2100 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Scn11aQ9R053 Dusp14-205ENSMUST00000164891 1454 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Scn11aQ9R053 Lgals3-203ENSMUST00000146468 1072 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Scn11aQ9R053 Dgcr6-208ENSMUST00000153123 920 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Scn11aQ9R053 Ssr2-205ENSMUST00000193934 569 ntTSL 3 BASIC19.92■□□□□ 0.78
Scn11aQ9R053 AC138767.1-201ENSMUST00000222661 415 ntBASIC19.92■□□□□ 0.78
Scn11aQ9R053 Mrpl34-201ENSMUST00000048914 607 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Scn11aQ9R053 Dnm1-216ENSMUST00000201494 2732 ntTSL 5 BASIC19.92■□□□□ 0.78
Scn11aQ9R053 Nr2f1-201ENSMUST00000091458 3207 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Scn11aQ9R053 Cog2-201ENSMUST00000034460 2825 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Scn11aQ9R053 Ift74-202ENSMUST00000107104 1713 ntTSL 2 BASIC19.92■□□□□ 0.78
Scn11aQ9R053 Card10-203ENSMUST00000170584 3220 ntAPPRIS ALT2 TSL 5 BASIC19.91■□□□□ 0.78
Scn11aQ9R053 AC133183.1-201ENSMUST00000221229 429 ntAPPRIS P1 TSL 3 BASIC19.91■□□□□ 0.78
Scn11aQ9R053 Ank1-201ENSMUST00000033947 1030 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Scn11aQ9R053 Nxn-201ENSMUST00000021204 2755 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Scn11aQ9R053 Gm14261-201ENSMUST00000145105 1429 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Scn11aQ9R053 Nagk-201ENSMUST00000037376 1405 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Scn11aQ9R053 Cfap206-201ENSMUST00000029971 2246 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
Scn11aQ9R053 Mettl27-204ENSMUST00000111219 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Scn11aQ9R053 Qprt-201ENSMUST00000032912 2050 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Scn11aQ9R053 Ccl27a-202ENSMUST00000108032 350 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Scn11aQ9R053 Tmed9-201ENSMUST00000109905 1420 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Scn11aQ9R053 Eapp-203ENSMUST00000160085 676 ntTSL 3 BASIC19.9■□□□□ 0.78
Scn11aQ9R053 Lrrc36-206ENSMUST00000216765 2301 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
Scn11aQ9R053 Cbr2-201ENSMUST00000026148 1110 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Scn11aQ9R053 Msmo1-201ENSMUST00000034015 2044 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Scn11aQ9R053 Ovol2-202ENSMUST00000103171 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
Scn11aQ9R053 Rhd-201ENSMUST00000030627 1514 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Scn11aQ9R053 A430057M04Rik-202ENSMUST00000170150 2176 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Scn11aQ9R053 Tmie-201ENSMUST00000050958 2802 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Scn11aQ9R053 Gnb1-202ENSMUST00000105616 3088 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Scn11aQ9R053 Timm23-201ENSMUST00000013845 1173 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Scn11aQ9R053 Dnph1-201ENSMUST00000046497 1106 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Scn11aQ9R053 Mvk-201ENSMUST00000043760 1660 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
Scn11aQ9R053 Cnksr1-201ENSMUST00000030645 2468 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Scn11aQ9R053 Atp5b-201ENSMUST00000026459 1916 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Scn11aQ9R053 Chsy1-201ENSMUST00000036372 4176 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Scn11aQ9R053 Ccdc174-201ENSMUST00000037783 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Scn11aQ9R053 Gm26858-201ENSMUST00000180608 2040 ntTSL 5 BASIC19.9■□□□□ 0.78
Scn11aQ9R053 Smap2-201ENSMUST00000043200 2905 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Retrieved 100 of 76,532 protein–RNA pairs in 22.1 ms