Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Fbxl3-206ENSMUST00000145693 3352 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Lima1Q9ERG0 Clip2-202ENSMUST00000100647 4994 ntAPPRIS P4 TSL 1 (best) BASIC16.67■□□□□ 0.26
Lima1Q9ERG0 Psip1-201ENSMUST00000030207 3251 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Lima1Q9ERG0 Spata6-201ENSMUST00000038868 2466 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Lima1Q9ERG0 Ruvbl1-201ENSMUST00000032165 1675 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Lima1Q9ERG0 Gm27275-201ENSMUST00000184318 272 ntBASIC16.67■□□□□ 0.26
Lima1Q9ERG0 Alkbh1-212ENSMUST00000185301 408 ntBASIC16.67■□□□□ 0.26
Lima1Q9ERG0 Gm29257-201ENSMUST00000186115 639 ntBASIC16.67■□□□□ 0.26
Lima1Q9ERG0 Ankra2-204ENSMUST00000150352 2217 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Lima1Q9ERG0 Tmtc4-204ENSMUST00000126867 2952 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
Lima1Q9ERG0 Lrrfip2-201ENSMUST00000035078 3260 ntTSL 5 BASIC16.67■□□□□ 0.26
Lima1Q9ERG0 Eif1-201ENSMUST00000049385 1322 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Lima1Q9ERG0 Pkp2-202ENSMUST00000161342 2931 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Lima1Q9ERG0 Trmt2a-203ENSMUST00000115640 2367 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Lima1Q9ERG0 Rab11fip5-202ENSMUST00000204087 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Lima1Q9ERG0 Gabpa-201ENSMUST00000009120 4987 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Lima1Q9ERG0 Spg21-201ENSMUST00000034955 2680 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Lima1Q9ERG0 Npas3-201ENSMUST00000101432 5879 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Lima1Q9ERG0 Larp1b-206ENSMUST00000191872 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Lima1Q9ERG0 Ankrd63-201ENSMUST00000104937 4861 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
Lima1Q9ERG0 Smim3-201ENSMUST00000042710 1984 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Lima1Q9ERG0 Sh3bp2-203ENSMUST00000118545 3034 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Lima1Q9ERG0 Tfeb-204ENSMUST00000113288 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Lima1Q9ERG0 Hmga1-205ENSMUST00000118599 529 ntAPPRIS P3 TSL 3 BASIC16.66■□□□□ 0.26
Lima1Q9ERG0 Ccdc106-204ENSMUST00000207974 2492 ntTSL 2 BASIC16.66■□□□□ 0.26
Lima1Q9ERG0 Slc15a3-201ENSMUST00000025646 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Lima1Q9ERG0 Cldn5-201ENSMUST00000043577 1414 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
Lima1Q9ERG0 Adnp2-201ENSMUST00000066743 5012 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Lima1Q9ERG0 1700028I16Rik-201ENSMUST00000076984 1048 ntTSL 5 BASIC16.66■□□□□ 0.26
Lima1Q9ERG0 Slc35g2-201ENSMUST00000093792 1590 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
Lima1Q9ERG0 Ryr2-203ENSMUST00000220597 4924 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Lima1Q9ERG0 Nubpl-201ENSMUST00000040090 2987 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Lima1Q9ERG0 Mob2-201ENSMUST00000084418 1490 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Lima1Q9ERG0 Seh1l-201ENSMUST00000025421 3516 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Lima1Q9ERG0 Wscd2-201ENSMUST00000094452 4302 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Lima1Q9ERG0 H2-Q10-202ENSMUST00000174525 1991 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
Lima1Q9ERG0 Myo5b-201ENSMUST00000074157 6745 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Lima1Q9ERG0 Diaph2-201ENSMUST00000037854 3742 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Lima1Q9ERG0 Sept10-203ENSMUST00000220156 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Lima1Q9ERG0 Lrrc36-206ENSMUST00000216765 2301 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
Lima1Q9ERG0 Haspin-201ENSMUST00000052140 2810 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
Lima1Q9ERG0 Napa-201ENSMUST00000006181 2517 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Lima1Q9ERG0 Sars2-201ENSMUST00000094632 1868 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Lima1Q9ERG0 Tbc1d12-201ENSMUST00000037302 4209 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Lima1Q9ERG0 Cachd1-202ENSMUST00000097955 4277 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Lima1Q9ERG0 Ddx51-201ENSMUST00000031478 4846 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Lima1Q9ERG0 Gm15375-201ENSMUST00000119510 849 ntBASIC16.65■□□□□ 0.26
Lima1Q9ERG0 Gm13158-201ENSMUST00000122007 736 ntBASIC16.65■□□□□ 0.26
Lima1Q9ERG0 Arl4aos-201ENSMUST00000135883 748 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Lima1Q9ERG0 AA465934-203ENSMUST00000177150 383 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Lima1Q9ERG0 Gm29241-201ENSMUST00000189260 1096 ntBASIC16.65■□□□□ 0.26
Lima1Q9ERG0 CT025689.6-201ENSMUST00000224991 1104 ntBASIC16.65■□□□□ 0.26
Lima1Q9ERG0 Clybl-201ENSMUST00000026625 1231 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Lima1Q9ERG0 Ick-201ENSMUST00000009972 873 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Lima1Q9ERG0 Atp6v1b2-201ENSMUST00000006435 2825 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Lima1Q9ERG0 Cygb-201ENSMUST00000021166 2331 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Lima1Q9ERG0 Akt2-214ENSMUST00000167435 2865 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Lima1Q9ERG0 Tsc22d2-203ENSMUST00000199164 4659 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Lima1Q9ERG0 Tnfaip2-202ENSMUST00000109792 3284 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Lima1Q9ERG0 Fubp3-202ENSMUST00000113482 3268 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Lima1Q9ERG0 Phf7-201ENSMUST00000022459 2084 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Lima1Q9ERG0 Qprt-201ENSMUST00000032912 2050 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Lima1Q9ERG0 Tmem150b-202ENSMUST00000086364 2822 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Lima1Q9ERG0 Lrg1-201ENSMUST00000041357 1351 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
Lima1Q9ERG0 Ino80e-203ENSMUST00000106343 1973 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Lima1Q9ERG0 Capn10-201ENSMUST00000027488 2902 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Lima1Q9ERG0 Gm10654-201ENSMUST00000098653 1633 ntBASIC16.64■□□□□ 0.25
Lima1Q9ERG0 Letm2-208ENSMUST00000210616 2974 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Lima1Q9ERG0 Cbl-204ENSMUST00000205968 2809 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Lima1Q9ERG0 Gm37856-201ENSMUST00000191634 999 ntBASIC16.64■□□□□ 0.25
Lima1Q9ERG0 Ndufa6-201ENSMUST00000023085 560 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Lima1Q9ERG0 Cox8a-201ENSMUST00000039758 545 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Lima1Q9ERG0 Rpl38-202ENSMUST00000082092 345 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
Lima1Q9ERG0 Gm26860-201ENSMUST00000181674 1489 ntTSL 5 BASIC16.64■□□□□ 0.25
Lima1Q9ERG0 Acads-201ENSMUST00000031524 1870 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Lima1Q9ERG0 Taz-201ENSMUST00000069722 1851 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
Lima1Q9ERG0 Atp6v1c1-201ENSMUST00000022904 2071 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Lima1Q9ERG0 Mbip-201ENSMUST00000021416 1512 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Lima1Q9ERG0 Pdgfa-201ENSMUST00000046901 1543 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Lima1Q9ERG0 Tmem117-201ENSMUST00000080141 2781 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Lima1Q9ERG0 Mid1ip1-202ENSMUST00000115524 2022 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Lima1Q9ERG0 Adamtsl1-201ENSMUST00000048885 1842 ntTSL 5 BASIC16.63■□□□□ 0.25
Lima1Q9ERG0 Mcoln2-202ENSMUST00000098524 2492 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Lima1Q9ERG0 Ankdd1a-201ENSMUST00000061766 1443 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
Lima1Q9ERG0 Osbpl1a-205ENSMUST00000119512 1947 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Lima1Q9ERG0 Ogfr-201ENSMUST00000029087 2449 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Lima1Q9ERG0 Tmem42-202ENSMUST00000213514 631 ntTSL 3 BASIC16.63■□□□□ 0.25
Lima1Q9ERG0 Rasa2-201ENSMUST00000034984 5813 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Lima1Q9ERG0 Chst2-201ENSMUST00000036267 7328 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Lima1Q9ERG0 Mboat4-201ENSMUST00000095345 1836 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Lima1Q9ERG0 Naa35-201ENSMUST00000022038 3793 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Lima1Q9ERG0 Dclk2-208ENSMUST00000194452 2066 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Lima1Q9ERG0 Mis18bp1-208ENSMUST00000222244 2053 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Lima1Q9ERG0 Zfp384-207ENSMUST00000112427 3072 ntAPPRIS P2 TSL 5 BASIC16.63■□□□□ 0.25
Lima1Q9ERG0 Klc3-202ENSMUST00000108457 1632 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
Lima1Q9ERG0 Ell2-201ENSMUST00000001583 4382 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Lima1Q9ERG0 2810425M01Rik-201ENSMUST00000180790 1850 ntTSL 5 BASIC16.63■□□□□ 0.25
Lima1Q9ERG0 Rbmxl1-202ENSMUST00000211719 1622 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Lima1Q9ERG0 Soga3-201ENSMUST00000092629 4105 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
Lima1Q9ERG0 Bloc1s3-201ENSMUST00000077408 3188 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Retrieved 100 of 76,532 protein–RNA pairs in 71.2 ms