Protein–RNA interactions for Protein: Q9EPU4

Cpsf1, Cleavage and polyadenylation specificity factor subunit 1, mousemouse

Known RBP Predictions only

Length 1,441 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf1Q9EPU4 Ppm1b-202ENSMUST00000112304 3262 ntAPPRIS P3 TSL 1 (best) BASIC23.25■■□□□ 1.31
Cpsf1Q9EPU4 C2cd4c-202ENSMUST00000178228 2761 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
Cpsf1Q9EPU4 Abtb1-201ENSMUST00000032169 1845 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
Cpsf1Q9EPU4 Pi4k2b-201ENSMUST00000031081 3139 ntAPPRIS P3 TSL 1 (best) BASIC23.25■■□□□ 1.31
Cpsf1Q9EPU4 Rbm12b1-202ENSMUST00000069128 3069 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
Cpsf1Q9EPU4 CAAA01066804.1-201ENSMUST00000217800 611 ntTSL 3 BASIC23.25■■□□□ 1.31
Cpsf1Q9EPU4 Wdr45-201ENSMUST00000043045 1609 ntAPPRIS P2 TSL 1 (best) BASIC23.24■■□□□ 1.31
Cpsf1Q9EPU4 Kcnb1-201ENSMUST00000059826 4015 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
Cpsf1Q9EPU4 Rpf1-203ENSMUST00000199079 1978 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
Cpsf1Q9EPU4 Fhl2-201ENSMUST00000008280 1563 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
Cpsf1Q9EPU4 Shox2-202ENSMUST00000162060 1537 ntTSL 3 BASIC23.24■■□□□ 1.31
Cpsf1Q9EPU4 Pacsin3-202ENSMUST00000059566 1867 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
Cpsf1Q9EPU4 Bnipl-201ENSMUST00000098871 1414 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
Cpsf1Q9EPU4 Agbl5-215ENSMUST00000202060 3121 ntAPPRIS ALT2 TSL 1 (best) BASIC23.24■■□□□ 1.31
Cpsf1Q9EPU4 Klhdc8b-210ENSMUST00000193895 2718 ntAPPRIS P1 TSL 5 BASIC23.24■■□□□ 1.31
Cpsf1Q9EPU4 Kcnn1-207ENSMUST00000212509 1608 ntAPPRIS ALT2 TSL 5 BASIC23.24■■□□□ 1.31
Cpsf1Q9EPU4 Ccdc177-201ENSMUST00000073251 5775 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
Cpsf1Q9EPU4 Mis18bp1-202ENSMUST00000124201 717 ntTSL 3 BASIC23.24■■□□□ 1.31
Cpsf1Q9EPU4 Uba52-203ENSMUST00000125184 711 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
Cpsf1Q9EPU4 Hist1h1a-201ENSMUST00000055770 741 ntAPPRIS P1 BASIC23.24■■□□□ 1.31
Cpsf1Q9EPU4 4930451I11Rik-201ENSMUST00000061695 481 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
Cpsf1Q9EPU4 Rbck1-202ENSMUST00000109847 2384 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Cpsf1Q9EPU4 Bcl7b-203ENSMUST00000111188 1434 ntAPPRIS ALT1 TSL 5 BASIC23.23■■□□□ 1.31
Cpsf1Q9EPU4 Gm9821-201ENSMUST00000178895 1953 ntAPPRIS P1 BASIC23.23■■□□□ 1.31
Cpsf1Q9EPU4 Cfap206-201ENSMUST00000029971 2246 ntAPPRIS P1 TSL 5 BASIC23.23■■□□□ 1.31
Cpsf1Q9EPU4 Sh2b2-203ENSMUST00000196397 2797 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Cpsf1Q9EPU4 Ints6-201ENSMUST00000053959 4993 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Cpsf1Q9EPU4 Gab1-201ENSMUST00000034150 4870 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Cpsf1Q9EPU4 Matn4-201ENSMUST00000103103 2304 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Cpsf1Q9EPU4 Gm13216-201ENSMUST00000117145 591 ntBASIC23.23■■□□□ 1.31
Cpsf1Q9EPU4 Lce1k-201ENSMUST00000179917 663 ntAPPRIS P1 TSL 2 BASIC23.23■■□□□ 1.31
Cpsf1Q9EPU4 1810026B05Rik-205ENSMUST00000184855 409 ntTSL 3 BASIC23.23■■□□□ 1.31
Cpsf1Q9EPU4 Stard3nl-208ENSMUST00000200323 1128 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
Cpsf1Q9EPU4 Gm44430-201ENSMUST00000203376 995 ntBASIC23.23■■□□□ 1.31
Cpsf1Q9EPU4 Gm40457-201ENSMUST00000205319 1174 ntTSL 5 BASIC23.23■■□□□ 1.31
Cpsf1Q9EPU4 Spr-ps1-201ENSMUST00000089584 605 ntBASIC23.23■■□□□ 1.31
Cpsf1Q9EPU4 Ostm1-201ENSMUST00000040718 3006 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Cpsf1Q9EPU4 Mmd-201ENSMUST00000004050 2677 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Cpsf1Q9EPU4 4933434E20Rik-209ENSMUST00000162114 1411 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
Cpsf1Q9EPU4 Gm27029-201ENSMUST00000107257 1898 ntAPPRIS ALT2 TSL 5 BASIC23.22■■□□□ 1.31
Cpsf1Q9EPU4 Pla2g2c-201ENSMUST00000030530 1618 ntAPPRIS P1 TSL 3 BASIC23.22■■□□□ 1.31
Cpsf1Q9EPU4 Mfsd10-203ENSMUST00000114331 1754 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Cpsf1Q9EPU4 Cenpb-201ENSMUST00000089510 4886 ntAPPRIS P1 BASIC23.22■■□□□ 1.31
Cpsf1Q9EPU4 Trim33-202ENSMUST00000106860 5025 ntAPPRIS ALT2 TSL 1 (best) BASIC23.22■■□□□ 1.31
Cpsf1Q9EPU4 Gm16835-201ENSMUST00000140488 2809 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
Cpsf1Q9EPU4 6430573F11Rik-202ENSMUST00000135373 2573 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
Cpsf1Q9EPU4 Rnf141-201ENSMUST00000106682 1101 ntAPPRIS P1 TSL 3 BASIC23.22■■□□□ 1.31
Cpsf1Q9EPU4 Gm16272-201ENSMUST00000128218 388 ntTSL 2 BASIC23.22■■□□□ 1.31
Cpsf1Q9EPU4 Gm20675-201ENSMUST00000175861 338 ntTSL 3 BASIC23.22■■□□□ 1.31
Cpsf1Q9EPU4 Pdcd2l-201ENSMUST00000002710 1295 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Cpsf1Q9EPU4 Astn2-202ENSMUST00000084496 4675 ntAPPRIS ALT2 TSL 5 BASIC23.22■■□□□ 1.31
Cpsf1Q9EPU4 Sec1-201ENSMUST00000040636 2470 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Cpsf1Q9EPU4 Anxa2-201ENSMUST00000034756 1447 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Cpsf1Q9EPU4 Zcchc24-201ENSMUST00000069180 4556 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Cpsf1Q9EPU4 Ndufs2-202ENSMUST00000111318 1545 ntTSL 5 BASIC23.21■■□□□ 1.31
Cpsf1Q9EPU4 Plppr2-203ENSMUST00000190387 2608 ntAPPRIS P2 TSL 1 (best) BASIC23.21■■□□□ 1.31
Cpsf1Q9EPU4 Sdf4-203ENSMUST00000105578 1654 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Cpsf1Q9EPU4 Sec14l1-203ENSMUST00000103026 2589 ntAPPRIS ALT2 TSL 5 BASIC23.21■■□□□ 1.31
Cpsf1Q9EPU4 Txnl1-201ENSMUST00000025476 2558 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Cpsf1Q9EPU4 Slc39a1-201ENSMUST00000015467 2364 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Cpsf1Q9EPU4 1810010H24Rik-201ENSMUST00000106767 1100 ntAPPRIS P2 TSL 2 BASIC23.21■■□□□ 1.31
Cpsf1Q9EPU4 Zkscan8-202ENSMUST00000110481 728 ntTSL 2 BASIC23.21■■□□□ 1.31
Cpsf1Q9EPU4 Cd82-204ENSMUST00000111257 1003 ntAPPRIS P1 TSL 5 BASIC23.21■■□□□ 1.31
Cpsf1Q9EPU4 Rnf186-201ENSMUST00000116094 1249 ntAPPRIS P1 BASIC23.21■■□□□ 1.31
Cpsf1Q9EPU4 Lce1a1-201ENSMUST00000074142 705 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Cpsf1Q9EPU4 Gm8839-201ENSMUST00000121279 1645 ntBASIC23.21■■□□□ 1.31
Cpsf1Q9EPU4 Kptn-201ENSMUST00000006178 1630 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Cpsf1Q9EPU4 Eif6-202ENSMUST00000109638 1382 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
Cpsf1Q9EPU4 Ube2f-204ENSMUST00000178627 1363 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Cpsf1Q9EPU4 Mlxip-202ENSMUST00000111596 2653 ntTSL 1 (best) BASIC23.2■■□□□ 1.31
Cpsf1Q9EPU4 Gm14641-201ENSMUST00000136486 452 ntTSL 3 BASIC23.2■■□□□ 1.3
Cpsf1Q9EPU4 Gm15295-201ENSMUST00000139874 488 ntTSL 5 BASIC23.2■■□□□ 1.3
Cpsf1Q9EPU4 Gm10052-201ENSMUST00000168019 960 ntBASIC23.2■■□□□ 1.3
Cpsf1Q9EPU4 Gm7729-201ENSMUST00000050143 801 ntBASIC23.2■■□□□ 1.3
Cpsf1Q9EPU4 Pex11a-201ENSMUST00000032761 2241 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Cpsf1Q9EPU4 Yars2-204ENSMUST00000159962 2805 ntTSL 2 BASIC23.2■■□□□ 1.3
Cpsf1Q9EPU4 Gss-203ENSMUST00000130881 1724 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
Cpsf1Q9EPU4 Ccdc149-201ENSMUST00000059428 3295 ntAPPRIS P1 TSL 5 BASIC23.2■■□□□ 1.3
Cpsf1Q9EPU4 Klhl25-201ENSMUST00000092073 3385 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Cpsf1Q9EPU4 Cdc42ep3-201ENSMUST00000068958 1967 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Cpsf1Q9EPU4 Jam2-201ENSMUST00000098407 1998 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
Cpsf1Q9EPU4 Dph1-201ENSMUST00000044949 2139 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Cpsf1Q9EPU4 Hipk1-201ENSMUST00000029438 4185 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
Cpsf1Q9EPU4 Hoxaas2-202ENSMUST00000155922 1567 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
Cpsf1Q9EPU4 Pbx4-201ENSMUST00000081503 1560 ntAPPRIS P1 TSL 5 BASIC23.19■■□□□ 1.3
Cpsf1Q9EPU4 Xrcc6-202ENSMUST00000100399 3296 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
Cpsf1Q9EPU4 Fgf20-202ENSMUST00000118639 587 ntTSL 3 BASIC23.19■■□□□ 1.3
Cpsf1Q9EPU4 Alkal1-201ENSMUST00000133144 971 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
Cpsf1Q9EPU4 Gm12973-201ENSMUST00000143967 607 ntTSL 5 BASIC23.19■■□□□ 1.3
Cpsf1Q9EPU4 Arhgef19-201ENSMUST00000006618 3414 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
Cpsf1Q9EPU4 Mon1a-201ENSMUST00000035202 2042 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
Cpsf1Q9EPU4 Zfpm1-201ENSMUST00000054052 3390 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
Cpsf1Q9EPU4 Rasgef1b-205ENSMUST00000161148 2430 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
Cpsf1Q9EPU4 Sqstm1-201ENSMUST00000015981 2673 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
Cpsf1Q9EPU4 Amacr-201ENSMUST00000070877 2577 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Cpsf1Q9EPU4 Gm128-202ENSMUST00000107197 1289 ntTSL 2 BASIC23.18■■□□□ 1.3
Cpsf1Q9EPU4 Gm24589-201ENSMUST00000116692 94 ntBASIC23.18■■□□□ 1.3
Cpsf1Q9EPU4 Rnf5-201ENSMUST00000015622 1238 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Cpsf1Q9EPU4 Gm36967-201ENSMUST00000193814 266 ntBASIC23.18■■□□□ 1.3
Cpsf1Q9EPU4 D830030K20Rik-204ENSMUST00000225885 1142 ntBASIC23.18■■□□□ 1.3
Retrieved 100 of 76,532 protein–RNA pairs in 54.4 ms