Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Fxyd6-203ENSMUST00000217381 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Smc1aQ9CU62 Tpd52l1-201ENSMUST00000000305 1308 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Smc1aQ9CU62 Rhot1-201ENSMUST00000017831 3029 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Smc1aQ9CU62 Nxt1-202ENSMUST00000109961 1116 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
Smc1aQ9CU62 Bola2-203ENSMUST00000130498 1266 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Smc1aQ9CU62 Tpsg1-202ENSMUST00000160377 1040 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Smc1aQ9CU62 Ndufa12-201ENSMUST00000020209 1110 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Smc1aQ9CU62 Gm18959-201ENSMUST00000208954 655 ntBASIC18.84■□□□□ 0.61
Smc1aQ9CU62 Nxt1-201ENSMUST00000047177 956 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Smc1aQ9CU62 Gm7367-201ENSMUST00000057611 492 ntBASIC18.84■□□□□ 0.61
Smc1aQ9CU62 Pcmt1-202ENSMUST00000159917 2491 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
Smc1aQ9CU62 Col11a2-202ENSMUST00000114252 5620 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
Smc1aQ9CU62 Vegfa-201ENSMUST00000024747 2765 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Smc1aQ9CU62 Ubald1-201ENSMUST00000037843 1851 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Smc1aQ9CU62 Abhd11-206ENSMUST00000154469 1473 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Smc1aQ9CU62 C030014I23Rik-201ENSMUST00000080911 1810 ntBASIC18.84■□□□□ 0.61
Smc1aQ9CU62 Nmnat3-201ENSMUST00000112935 2166 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Smc1aQ9CU62 Adgrl1-205ENSMUST00000132500 5719 ntTSL 5 BASIC18.83■□□□□ 0.61
Smc1aQ9CU62 Gdpd5-201ENSMUST00000037528 4611 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Smc1aQ9CU62 Tfap4-201ENSMUST00000005862 2113 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Smc1aQ9CU62 Kcnh2-202ENSMUST00000115098 3193 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
Smc1aQ9CU62 Prr14-201ENSMUST00000033095 2402 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Smc1aQ9CU62 Dlgap4-205ENSMUST00000109567 4840 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.61
Smc1aQ9CU62 Gm16712-201ENSMUST00000181962 1960 ntTSL 2 BASIC18.83■□□□□ 0.61
Smc1aQ9CU62 Gm10654-201ENSMUST00000098653 1633 ntBASIC18.83■□□□□ 0.61
Smc1aQ9CU62 Znhit1-203ENSMUST00000111090 698 ntTSL 2 BASIC18.83■□□□□ 0.6
Smc1aQ9CU62 Ddah2-204ENSMUST00000174493 1254 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Smc1aQ9CU62 A430033K04Rik-204ENSMUST00000200521 1110 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Smc1aQ9CU62 Cnn1-203ENSMUST00000214601 1225 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Smc1aQ9CU62 A430033K04Rik-201ENSMUST00000032590 1109 ntTSL 5 BASIC18.83■□□□□ 0.6
Smc1aQ9CU62 H2-DMa-201ENSMUST00000042121 1555 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Smc1aQ9CU62 Ikzf1-203ENSMUST00000065433 4697 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.6
Smc1aQ9CU62 Gopc-202ENSMUST00000105475 4317 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.6
Smc1aQ9CU62 Ptpa-202ENSMUST00000113601 1838 ntTSL 5 BASIC18.83■□□□□ 0.6
Smc1aQ9CU62 Eml2-201ENSMUST00000048502 2275 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
Smc1aQ9CU62 Pard6g-201ENSMUST00000070219 3143 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Smc1aQ9CU62 Cdh2-201ENSMUST00000025166 4843 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Smc1aQ9CU62 Add1-204ENSMUST00000114338 4007 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Smc1aQ9CU62 Krt81-201ENSMUST00000061185 1857 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Smc1aQ9CU62 Slc6a17-208ENSMUST00000169449 6322 ntAPPRIS ALT1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Smc1aQ9CU62 Slc6a17-201ENSMUST00000029499 6308 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
Smc1aQ9CU62 Rtn3-201ENSMUST00000025667 2841 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Smc1aQ9CU62 Ptf1aos-201ENSMUST00000122978 916 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Smc1aQ9CU62 Cdpf1-204ENSMUST00000144067 761 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
Smc1aQ9CU62 Dusp13-213ENSMUST00000184703 902 ntAPPRIS ALT1 TSL 5 BASIC18.82■□□□□ 0.6
Smc1aQ9CU62 AC153845.2-202ENSMUST00000213372 807 ntTSL 3 BASIC18.82■□□□□ 0.6
Smc1aQ9CU62 Ntpcr-201ENSMUST00000034313 1155 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Smc1aQ9CU62 Gnb5-201ENSMUST00000076889 1188 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Smc1aQ9CU62 0610009B22Rik-201ENSMUST00000007921 813 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Smc1aQ9CU62 Gm10819-201ENSMUST00000099988 561 ntBASIC18.82■□□□□ 0.6
Smc1aQ9CU62 Ncmap-205ENSMUST00000105860 2000 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Smc1aQ9CU62 Mturn-203ENSMUST00000190641 5303 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Smc1aQ9CU62 Mfsd10-202ENSMUST00000114329 1906 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Smc1aQ9CU62 Igdcc3-201ENSMUST00000034961 3146 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Smc1aQ9CU62 Amigo2-201ENSMUST00000053106 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Smc1aQ9CU62 Ccnyl1-202ENSMUST00000114077 3281 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Smc1aQ9CU62 Nhs-201ENSMUST00000081569 4881 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
Smc1aQ9CU62 Kcna6-204ENSMUST00000185333 5836 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Smc1aQ9CU62 Gm26917-202ENSMUST00000192833 3329 ntBASIC18.81■□□□□ 0.6
Smc1aQ9CU62 Zic3-202ENSMUST00000088629 1951 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Smc1aQ9CU62 Fam219b-202ENSMUST00000114200 3017 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Smc1aQ9CU62 Rassf1-201ENSMUST00000010211 1727 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Smc1aQ9CU62 Gm38345-201ENSMUST00000192635 1748 ntBASIC18.81■□□□□ 0.6
Smc1aQ9CU62 Josd2-206ENSMUST00000121922 684 ntTSL 5 BASIC18.81■□□□□ 0.6
Smc1aQ9CU62 Gm14968-201ENSMUST00000155528 769 ntTSL 3 BASIC18.81■□□□□ 0.6
Smc1aQ9CU62 Gm20033-201ENSMUST00000180470 572 ntTSL 3 BASIC18.81■□□□□ 0.6
Smc1aQ9CU62 Gm3764-209ENSMUST00000181550 1093 ntTSL 3 BASIC18.81■□□□□ 0.6
Smc1aQ9CU62 Lsm6-201ENSMUST00000051867 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Smc1aQ9CU62 Hist3h2ba-201ENSMUST00000078267 614 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
Smc1aQ9CU62 Dnm1-216ENSMUST00000201494 2732 ntTSL 5 BASIC18.81■□□□□ 0.6
Smc1aQ9CU62 Ripor2-205ENSMUST00000110384 5608 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Smc1aQ9CU62 Tbp-202ENSMUST00000117593 2067 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Smc1aQ9CU62 Zfp318-201ENSMUST00000113481 7850 ntAPPRIS P4 TSL 5 BASIC18.81■□□□□ 0.6
Smc1aQ9CU62 Hnrnpu-201ENSMUST00000037748 7640 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Smc1aQ9CU62 Lzic-201ENSMUST00000030842 1817 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Smc1aQ9CU62 Pcbp1-201ENSMUST00000053015 1830 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
Smc1aQ9CU62 Zfp219-212ENSMUST00000228580 2812 ntAPPRIS ALT2 BASIC18.81■□□□□ 0.6
Smc1aQ9CU62 Fhl1-203ENSMUST00000114769 2770 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Smc1aQ9CU62 Aspscr1-205ENSMUST00000106160 1550 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Smc1aQ9CU62 Prpf40b-212ENSMUST00000145482 3308 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Smc1aQ9CU62 Bmp2k-201ENSMUST00000035635 7387 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Smc1aQ9CU62 Fbxl12os-202ENSMUST00000136376 2349 ntTSL 2 BASIC18.8■□□□□ 0.6
Smc1aQ9CU62 Kcmf1-201ENSMUST00000068697 3251 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Smc1aQ9CU62 Snx16-201ENSMUST00000029047 2288 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
Smc1aQ9CU62 Dlgap4-212ENSMUST00000169464 4851 ntTSL 5 BASIC18.8■□□□□ 0.6
Smc1aQ9CU62 Snx27-202ENSMUST00000107283 3531 ntAPPRIS P4 TSL 1 (best) BASIC18.8■□□□□ 0.6
Smc1aQ9CU62 Arntl-201ENSMUST00000047321 2908 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Smc1aQ9CU62 Syt8-202ENSMUST00000105976 1289 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Smc1aQ9CU62 Syt8-205ENSMUST00000122393 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Smc1aQ9CU62 5430402O13Rik-201ENSMUST00000126537 869 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Smc1aQ9CU62 1810012K08Rik-201ENSMUST00000155199 574 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Smc1aQ9CU62 Gm27463-201ENSMUST00000183569 57 ntBASIC18.8■□□□□ 0.6
Smc1aQ9CU62 Gm42738-201ENSMUST00000201813 439 ntTSL 3 BASIC18.8■□□□□ 0.6
Smc1aQ9CU62 Pfdn6-201ENSMUST00000025163 807 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Smc1aQ9CU62 Rprml-201ENSMUST00000057870 1010 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
Smc1aQ9CU62 Trim54-201ENSMUST00000013771 1434 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Smc1aQ9CU62 Slc27a4-201ENSMUST00000080065 4054 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Smc1aQ9CU62 Pi4k2b-201ENSMUST00000031081 3139 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
Smc1aQ9CU62 Antxr2-202ENSMUST00000199088 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Smc1aQ9CU62 Rab6a-201ENSMUST00000032946 3214 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
Retrieved 100 of 76,532 protein–RNA pairs in 20.4 ms