Protein–RNA interactions for Protein: Q8CEC0

Nup88, Nuclear pore complex protein Nup88, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nup88Q8CEC0 AC159205.6-201ENSMUST00000224935 887 ntBASIC19.89■□□□□ 0.77
Nup88Q8CEC0 Metrn-201ENSMUST00000002344 987 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
Nup88Q8CEC0 Banf1-201ENSMUST00000025762 735 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Nup88Q8CEC0 Fam167b-201ENSMUST00000052835 913 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Nup88Q8CEC0 Zscan25-201ENSMUST00000094116 1796 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Nup88Q8CEC0 Nudt4-201ENSMUST00000020217 3210 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Nup88Q8CEC0 Lrch3-211ENSMUST00000170899 2752 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
Nup88Q8CEC0 Cnksr1-201ENSMUST00000030645 2468 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Nup88Q8CEC0 Slc22a12-201ENSMUST00000113451 2213 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Nup88Q8CEC0 Ttpal-202ENSMUST00000109408 1999 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Nup88Q8CEC0 Artn-202ENSMUST00000097913 1568 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Nup88Q8CEC0 Ikzf1-203ENSMUST00000065433 4697 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
Nup88Q8CEC0 Npnt-202ENSMUST00000042744 4619 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
Nup88Q8CEC0 Tnfsf13-201ENSMUST00000018896 1407 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
Nup88Q8CEC0 Vamp4-203ENSMUST00000132158 2752 ntTSL 3 BASIC19.88■□□□□ 0.77
Nup88Q8CEC0 Fam135a-201ENSMUST00000027337 5536 ntAPPRIS P2 TSL 5 BASIC19.88■□□□□ 0.77
Nup88Q8CEC0 Gm3764-209ENSMUST00000181550 1093 ntTSL 3 BASIC19.88■□□□□ 0.77
Nup88Q8CEC0 Gm10517-202ENSMUST00000192970 758 ntBASIC19.88■□□□□ 0.77
Nup88Q8CEC0 A430033K04Rik-204ENSMUST00000200521 1110 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Nup88Q8CEC0 Uchl3-201ENSMUST00000002289 903 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Nup88Q8CEC0 A430033K04Rik-201ENSMUST00000032590 1109 ntTSL 5 BASIC19.88■□□□□ 0.77
Nup88Q8CEC0 4930505A04Rik-201ENSMUST00000041763 904 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
Nup88Q8CEC0 Paox-202ENSMUST00000097967 1024 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Nup88Q8CEC0 Tm9sf1-205ENSMUST00000122358 2517 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Nup88Q8CEC0 Atf6b-202ENSMUST00000173984 2315 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
Nup88Q8CEC0 Atxn7-201ENSMUST00000022257 6853 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
Nup88Q8CEC0 Nsun5-201ENSMUST00000000940 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Nup88Q8CEC0 Gm26580-201ENSMUST00000181002 2095 ntTSL 5 BASIC19.88■□□□□ 0.77
Nup88Q8CEC0 Synpo-205ENSMUST00000130044 4970 ntAPPRIS P3 TSL 2 BASIC19.88■□□□□ 0.77
Nup88Q8CEC0 Mtfr1l-202ENSMUST00000116279 1969 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Nup88Q8CEC0 Gm11841-201ENSMUST00000117060 1963 ntBASIC19.88■□□□□ 0.77
Nup88Q8CEC0 2900052L18Rik-201ENSMUST00000139014 1588 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Nup88Q8CEC0 Trim7-201ENSMUST00000046903 2161 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
Nup88Q8CEC0 Ttc6-203ENSMUST00000172939 5782 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
Nup88Q8CEC0 Akap8l-201ENSMUST00000050214 2075 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Nup88Q8CEC0 Acot7-203ENSMUST00000105652 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
Nup88Q8CEC0 Mycn-201ENSMUST00000043396 2674 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Nup88Q8CEC0 A930003O13Rik-203ENSMUST00000199056 1955 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Nup88Q8CEC0 Rab11fip3-202ENSMUST00000120691 5103 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
Nup88Q8CEC0 Josd2-206ENSMUST00000121922 684 ntTSL 5 BASIC19.87■□□□□ 0.77
Nup88Q8CEC0 Utf1-201ENSMUST00000168457 1227 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Nup88Q8CEC0 Polr3e-203ENSMUST00000207481 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
Nup88Q8CEC0 Tnfsf14-201ENSMUST00000005976 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Nup88Q8CEC0 Pcmt1-202ENSMUST00000159917 2491 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
Nup88Q8CEC0 Avl9-201ENSMUST00000031805 6670 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Nup88Q8CEC0 Fcgrt-201ENSMUST00000003512 1770 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
Nup88Q8CEC0 Vangl2-203ENSMUST00000111264 2349 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Nup88Q8CEC0 Taok3-203ENSMUST00000111978 4467 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Nup88Q8CEC0 Rasgrp2-201ENSMUST00000035716 2219 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
Nup88Q8CEC0 Klc3-202ENSMUST00000108457 1632 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
Nup88Q8CEC0 Relt-201ENSMUST00000008462 2851 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Nup88Q8CEC0 Plppr4-201ENSMUST00000061071 5696 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Nup88Q8CEC0 Gm27029-201ENSMUST00000107257 1898 ntAPPRIS ALT2 TSL 5 BASIC19.86■□□□□ 0.77
Nup88Q8CEC0 Fam57b-201ENSMUST00000079423 2328 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Nup88Q8CEC0 Plppr5-202ENSMUST00000106473 4294 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Nup88Q8CEC0 Gm13216-201ENSMUST00000117145 591 ntBASIC19.86■□□□□ 0.77
Nup88Q8CEC0 1810062O18Rik-202ENSMUST00000128848 745 ntTSL 3 BASIC19.86■□□□□ 0.77
Nup88Q8CEC0 1810012K08Rik-201ENSMUST00000155199 574 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Nup88Q8CEC0 1700007L15Rik-201ENSMUST00000180923 737 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Nup88Q8CEC0 Gm27463-201ENSMUST00000183569 57 ntBASIC19.86■□□□□ 0.77
Nup88Q8CEC0 Gm38027-201ENSMUST00000192315 235 ntBASIC19.86■□□□□ 0.77
Nup88Q8CEC0 1700025A08Rik-201ENSMUST00000200753 609 ntBASIC19.86■□□□□ 0.77
Nup88Q8CEC0 Gm18959-201ENSMUST00000208954 655 ntBASIC19.86■□□□□ 0.77
Nup88Q8CEC0 Serbp1-203ENSMUST00000203077 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Nup88Q8CEC0 Fez2-202ENSMUST00000112487 2020 ntAPPRIS ALT1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Nup88Q8CEC0 Rnf128-201ENSMUST00000113026 2750 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Nup88Q8CEC0 Snx16-201ENSMUST00000029047 2288 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
Nup88Q8CEC0 Dnaaf3-201ENSMUST00000094897 2224 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Nup88Q8CEC0 Acaa1a-201ENSMUST00000039784 1762 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Nup88Q8CEC0 Guf1-202ENSMUST00000087228 3433 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Nup88Q8CEC0 Tle2-213ENSMUST00000146358 2749 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
Nup88Q8CEC0 Slc27a4-201ENSMUST00000080065 4054 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Nup88Q8CEC0 Etv6-201ENSMUST00000081028 5545 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
Nup88Q8CEC0 Uso1-201ENSMUST00000031355 3898 ntAPPRIS P2 TSL 1 (best) BASIC19.85■□□□□ 0.77
Nup88Q8CEC0 Evx1-201ENSMUST00000031787 2877 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Nup88Q8CEC0 Ramp2-202ENSMUST00000122006 899 ntTSL 2 BASIC19.85■□□□□ 0.77
Nup88Q8CEC0 4833413E03Rik-201ENSMUST00000013706 1091 ntTSL 5 BASIC19.85■□□□□ 0.77
Nup88Q8CEC0 Gm17182-201ENSMUST00000163795 860 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Nup88Q8CEC0 Dusp13-213ENSMUST00000184703 902 ntAPPRIS ALT1 TSL 5 BASIC19.85■□□□□ 0.77
Nup88Q8CEC0 Wdr74-202ENSMUST00000210512 1078 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Nup88Q8CEC0 Zbtb45-201ENSMUST00000051390 2171 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Nup88Q8CEC0 Rbpms-203ENSMUST00000053251 2466 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Nup88Q8CEC0 Glmn-201ENSMUST00000078021 2015 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Nup88Q8CEC0 Ddn-201ENSMUST00000075444 3740 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Nup88Q8CEC0 Lad1-201ENSMUST00000038760 2993 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Nup88Q8CEC0 Dlgap4-205ENSMUST00000109567 4840 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
Nup88Q8CEC0 Tmem125-201ENSMUST00000060214 1864 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
Nup88Q8CEC0 Bex3-202ENSMUST00000113112 826 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
Nup88Q8CEC0 Gm12085-201ENSMUST00000119263 940 ntBASIC19.84■□□□□ 0.77
Nup88Q8CEC0 Bola2-203ENSMUST00000130498 1266 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Nup88Q8CEC0 Prss16-204ENSMUST00000150547 1159 ntTSL 3 BASIC19.84■□□□□ 0.77
Nup88Q8CEC0 Snrnp48-202ENSMUST00000178564 847 ntTSL 5 BASIC19.84■□□□□ 0.77
Nup88Q8CEC0 Gm42477-201ENSMUST00000202427 469 ntTSL 3 BASIC19.84■□□□□ 0.77
Nup88Q8CEC0 Casp3-203ENSMUST00000210534 583 ntTSL 5 BASIC19.84■□□□□ 0.77
Nup88Q8CEC0 Mrpl28-201ENSMUST00000025014 1048 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Nup88Q8CEC0 Lrriq4-203ENSMUST00000172350 1797 ntAPPRIS P3 TSL 5 BASIC19.84■□□□□ 0.77
Nup88Q8CEC0 Mid1ip1-201ENSMUST00000008179 2019 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Nup88Q8CEC0 Nadk2-203ENSMUST00000100790 3665 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
Nup88Q8CEC0 Shisa2-201ENSMUST00000053949 3119 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Nup88Q8CEC0 Coro2a-202ENSMUST00000107756 4154 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
Retrieved 100 of 76,532 protein–RNA pairs in 70.1 ms