Protein–RNA interactions for Protein: Q8C120

Sh3rf3, SH3 domain-containing RING finger protein 3, mousemouse

Predictions only

Length 878 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf3Q8C120 Gm43353-201ENSMUST00000199224 1295 ntBASIC17.57■□□□□ 0.4
Sh3rf3Q8C120 Fitm1-201ENSMUST00000022826 971 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Sh3rf3Q8C120 Gng11-201ENSMUST00000031670 919 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Sh3rf3Q8C120 Tmem205-201ENSMUST00000046831 785 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Sh3rf3Q8C120 Whrn-201ENSMUST00000063650 4016 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Sh3rf3Q8C120 Dok4-201ENSMUST00000046461 2590 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Sh3rf3Q8C120 Nudt16-201ENSMUST00000035179 1631 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Sh3rf3Q8C120 Cog6-204ENSMUST00000193432 2078 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Sh3rf3Q8C120 Gm26803-201ENSMUST00000181705 2011 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Sh3rf3Q8C120 Slain2-201ENSMUST00000143829 4828 ntTSL 5 BASIC17.56■□□□□ 0.4
Sh3rf3Q8C120 Trim14-201ENSMUST00000046897 1429 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Sh3rf3Q8C120 Relb-201ENSMUST00000049912 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Sh3rf3Q8C120 Sh2b1-202ENSMUST00000205340 3366 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Sh3rf3Q8C120 Dtx2-201ENSMUST00000005072 2562 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
Sh3rf3Q8C120 Rab37-202ENSMUST00000067754 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Sh3rf3Q8C120 March3-202ENSMUST00000102912 1754 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Sh3rf3Q8C120 Cyb561d2-201ENSMUST00000041459 1786 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Sh3rf3Q8C120 Pmepa1-201ENSMUST00000036248 4538 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Sh3rf3Q8C120 Letm1-203ENSMUST00000148451 2478 ntTSL 2 BASIC17.56■□□□□ 0.4
Sh3rf3Q8C120 Rap1gap-202ENSMUST00000097837 3168 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Sh3rf3Q8C120 Gnaz-201ENSMUST00000037813 3519 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Sh3rf3Q8C120 Ebf3-204ENSMUST00000169486 4994 ntAPPRIS ALT1 TSL 5 BASIC17.56■□□□□ 0.4
Sh3rf3Q8C120 Nsl1-203ENSMUST00000139340 837 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Sh3rf3Q8C120 Gm14968-201ENSMUST00000155528 769 ntTSL 3 BASIC17.56■□□□□ 0.4
Sh3rf3Q8C120 Gm3264-202ENSMUST00000166776 882 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
Sh3rf3Q8C120 Gm2431-201ENSMUST00000171531 519 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
Sh3rf3Q8C120 Cacna2d1-207ENSMUST00000196750 1272 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Sh3rf3Q8C120 Lce1m-201ENSMUST00000029520 874 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Sh3rf3Q8C120 Mrps12-201ENSMUST00000056078 722 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Sh3rf3Q8C120 Ripply2-201ENSMUST00000058846 503 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Sh3rf3Q8C120 Mink1-205ENSMUST00000102559 4865 ntAPPRIS P4 TSL 1 (best) BASIC17.56■□□□□ 0.4
Sh3rf3Q8C120 Fam219b-202ENSMUST00000114200 3017 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Sh3rf3Q8C120 Wdr41-203ENSMUST00000160115 2851 ntTSL 5 BASIC17.56■□□□□ 0.4
Sh3rf3Q8C120 Tmem47-203ENSMUST00000171953 1801 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Sh3rf3Q8C120 Agbl4-205ENSMUST00000106591 1406 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Sh3rf3Q8C120 E030042O20Rik-201ENSMUST00000135244 1427 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Sh3rf3Q8C120 Rbmxl1-201ENSMUST00000049245 1695 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Sh3rf3Q8C120 Kcnh2-202ENSMUST00000115098 3193 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Sh3rf3Q8C120 Zhx1-202ENSMUST00000110168 5212 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
Sh3rf3Q8C120 Sema6c-214ENSMUST00000202315 2843 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
Sh3rf3Q8C120 AL590614.2-201ENSMUST00000225374 1937 ntBASIC17.55■□□□□ 0.4
Sh3rf3Q8C120 Trappc3-201ENSMUST00000030660 1336 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Sh3rf3Q8C120 D16Ertd472e-203ENSMUST00000114220 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Sh3rf3Q8C120 Uso1-201ENSMUST00000031355 3898 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Sh3rf3Q8C120 Gm44924-201ENSMUST00000138087 421 ntTSL 3 BASIC17.55■□□□□ 0.4
Sh3rf3Q8C120 Prr29-201ENSMUST00000009354 1112 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Sh3rf3Q8C120 Cdh24-201ENSMUST00000067784 3489 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
Sh3rf3Q8C120 Gm16754-201ENSMUST00000181222 2077 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Sh3rf3Q8C120 Relt-201ENSMUST00000008462 2851 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Sh3rf3Q8C120 Fignl2-201ENSMUST00000178140 4206 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
Sh3rf3Q8C120 Spdef-205ENSMUST00000167489 1708 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
Sh3rf3Q8C120 Ing4-205ENSMUST00000140131 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Sh3rf3Q8C120 Tox2-205ENSMUST00000165937 1675 ntAPPRIS P2 TSL 5 BASIC17.55■□□□□ 0.4
Sh3rf3Q8C120 Stam2-202ENSMUST00000127316 1928 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Sh3rf3Q8C120 Asic2-201ENSMUST00000021045 3436 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Sh3rf3Q8C120 Kcnq2-201ENSMUST00000016491 3067 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Sh3rf3Q8C120 Atp6v1b2-201ENSMUST00000006435 2825 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Sh3rf3Q8C120 Lrrc36-206ENSMUST00000216765 2301 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
Sh3rf3Q8C120 Trim14-202ENSMUST00000102924 1582 ntTSL 2 BASIC17.54■□□□□ 0.4
Sh3rf3Q8C120 C130026I21Rik-201ENSMUST00000064341 1561 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
Sh3rf3Q8C120 Usp36-202ENSMUST00000106296 5655 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
Sh3rf3Q8C120 Kctd1-202ENSMUST00000168989 3456 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Sh3rf3Q8C120 Snx16-201ENSMUST00000029047 2288 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
Sh3rf3Q8C120 Skp1a-203ENSMUST00000109072 1754 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
Sh3rf3Q8C120 Arhgef9-216ENSMUST00000197206 2227 ntTSL 5 BASIC17.54■□□□□ 0.4
Sh3rf3Q8C120 Hyls1-201ENSMUST00000115110 1973 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Sh3rf3Q8C120 2210408F21Rik-211ENSMUST00000151800 750 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Sh3rf3Q8C120 Gm26938-201ENSMUST00000182839 744 ntAPPRIS P1 TSL 3 BASIC17.54■□□□□ 0.4
Sh3rf3Q8C120 Rsu1-209ENSMUST00000191959 720 ntTSL 3 BASIC17.54■□□□□ 0.4
Sh3rf3Q8C120 Rprml-201ENSMUST00000057870 1010 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
Sh3rf3Q8C120 Fxn-201ENSMUST00000081333 1114 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Sh3rf3Q8C120 Mtif3-201ENSMUST00000016654 2131 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Sh3rf3Q8C120 Osbpl1a-208ENSMUST00000121888 2674 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Sh3rf3Q8C120 Mfsd4b1-201ENSMUST00000163705 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Sh3rf3Q8C120 Umad1-202ENSMUST00000159335 2615 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Sh3rf3Q8C120 Ino80e-203ENSMUST00000106343 1973 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Sh3rf3Q8C120 Nmnat3-201ENSMUST00000112935 2166 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Sh3rf3Q8C120 Ptpre-201ENSMUST00000073961 5410 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
Sh3rf3Q8C120 Praf2-201ENSMUST00000033489 1339 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Sh3rf3Q8C120 Kcnk4-201ENSMUST00000025908 1715 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Sh3rf3Q8C120 Ppp2r2d-207ENSMUST00000155672 1938 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Sh3rf3Q8C120 Aldh7a1-201ENSMUST00000066208 1914 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
Sh3rf3Q8C120 Sytl3-201ENSMUST00000097430 2100 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Sh3rf3Q8C120 Dancr-204ENSMUST00000132389 2347 ntBASIC17.53■□□□□ 0.4
Sh3rf3Q8C120 Fbxl12os-202ENSMUST00000136376 2349 ntTSL 2 BASIC17.53■□□□□ 0.4
Sh3rf3Q8C120 Napa-201ENSMUST00000006181 2517 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Sh3rf3Q8C120 Arntl-201ENSMUST00000047321 2908 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Sh3rf3Q8C120 Ubr5-201ENSMUST00000110336 9242 ntTSL 5 BASIC17.53■□□□□ 0.4
Sh3rf3Q8C120 Ddah2-204ENSMUST00000174493 1254 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Sh3rf3Q8C120 Gm19610-201ENSMUST00000202894 408 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Sh3rf3Q8C120 Gm30025-201ENSMUST00000218555 728 ntBASIC17.53■□□□□ 0.4
Sh3rf3Q8C120 Arl2-201ENSMUST00000025893 1144 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Sh3rf3Q8C120 Susd1-202ENSMUST00000107544 3220 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
Sh3rf3Q8C120 Mst1-204ENSMUST00000162886 2209 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
Sh3rf3Q8C120 Tmprss5-201ENSMUST00000070390 2047 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Sh3rf3Q8C120 Clasrp-201ENSMUST00000086041 2180 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Sh3rf3Q8C120 A930003O13Rik-203ENSMUST00000199056 1955 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Sh3rf3Q8C120 Rbpms2-201ENSMUST00000055844 1987 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Sh3rf3Q8C120 Csk-201ENSMUST00000034863 2749 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Sh3rf3Q8C120 Zscan29-203ENSMUST00000146243 2894 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Retrieved 100 of 76,532 protein–RNA pairs in 58.1 ms