Protein–RNA interactions for Protein: Q78JW9

Ubfd1, Ubiquitin domain-containing protein UBFD1, mousemouse

Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubfd1Q78JW9 Atf4-201ENSMUST00000109605 1724 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Ubfd1Q78JW9 Eri1-201ENSMUST00000033927 5079 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Ubfd1Q78JW9 Gm19439-201ENSMUST00000198195 2273 ntBASIC16.42■□□□□ 0.22
Ubfd1Q78JW9 Rnf157-202ENSMUST00000106398 4553 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
Ubfd1Q78JW9 Fbxl3-201ENSMUST00000022720 4309 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Ubfd1Q78JW9 Shroom3-211ENSMUST00000225438 5742 ntBASIC16.42■□□□□ 0.22
Ubfd1Q78JW9 Dach1-202ENSMUST00000071533 5219 ntAPPRIS P4 TSL 1 (best) BASIC16.42■□□□□ 0.22
Ubfd1Q78JW9 Sirt7-202ENSMUST00000106183 427 ntTSL 3 BASIC16.42■□□□□ 0.22
Ubfd1Q78JW9 Fgf8-205ENSMUST00000111927 843 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Ubfd1Q78JW9 Tmsb10-202ENSMUST00000114049 690 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Ubfd1Q78JW9 Gm19553-201ENSMUST00000175723 494 ntTSL 5 BASIC16.42■□□□□ 0.22
Ubfd1Q78JW9 Odf3b-201ENSMUST00000049968 1040 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Ubfd1Q78JW9 Insl6-201ENSMUST00000052380 708 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Ubfd1Q78JW9 Rpl36al-201ENSMUST00000054544 526 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Ubfd1Q78JW9 Fam53a-201ENSMUST00000045329 2346 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Ubfd1Q78JW9 Rnaseh2a-202ENSMUST00000109736 2981 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
Ubfd1Q78JW9 Tfap2a-208ENSMUST00000224999 2058 ntAPPRIS ALT1 BASIC16.42■□□□□ 0.22
Ubfd1Q78JW9 Map3k5-201ENSMUST00000095806 5450 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Ubfd1Q78JW9 Ints8-202ENSMUST00000108318 3169 ntTSL 5 BASIC16.42■□□□□ 0.22
Ubfd1Q78JW9 Evc-202ENSMUST00000114148 2119 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Ubfd1Q78JW9 Tnfsf14-201ENSMUST00000005976 1859 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Ubfd1Q78JW9 Inpp4a-201ENSMUST00000027287 5691 ntAPPRIS P2 TSL 5 BASIC16.41■□□□□ 0.22
Ubfd1Q78JW9 Plekhf2-201ENSMUST00000054776 2977 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Ubfd1Q78JW9 Ythdc1-203ENSMUST00000120498 3269 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
Ubfd1Q78JW9 Gm12359-201ENSMUST00000139017 1399 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Ubfd1Q78JW9 Lancl2-202ENSMUST00000072954 2245 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Ubfd1Q78JW9 Tyk2-205ENSMUST00000214864 1662 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Ubfd1Q78JW9 Dpep3-201ENSMUST00000034371 1698 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Ubfd1Q78JW9 Ran-201ENSMUST00000031383 2377 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Ubfd1Q78JW9 Rnf157-201ENSMUST00000100202 4619 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Ubfd1Q78JW9 Ddx19a-201ENSMUST00000040416 2547 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Ubfd1Q78JW9 1600012H06Rik-201ENSMUST00000052691 2506 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Ubfd1Q78JW9 Lhx6-205ENSMUST00000112967 3378 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Ubfd1Q78JW9 Gm9103-201ENSMUST00000119371 405 ntBASIC16.41■□□□□ 0.22
Ubfd1Q78JW9 Gm15952-201ENSMUST00000122858 490 ntTSL 3 BASIC16.41■□□□□ 0.22
Ubfd1Q78JW9 Mrps12-204ENSMUST00000171183 883 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
Ubfd1Q78JW9 Piga-208ENSMUST00000208697 947 ntTSL 5 BASIC16.41■□□□□ 0.22
Ubfd1Q78JW9 Snhg10-202ENSMUST00000222812 527 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Ubfd1Q78JW9 Gm26709-203ENSMUST00000223260 715 ntTSL 5 BASIC16.41■□□□□ 0.22
Ubfd1Q78JW9 Alkbh2-201ENSMUST00000053657 1073 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Ubfd1Q78JW9 Sftpb-201ENSMUST00000070437 1131 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
Ubfd1Q78JW9 Exosc5-201ENSMUST00000079634 1020 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Ubfd1Q78JW9 2610301B20Rik-201ENSMUST00000080517 2116 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Ubfd1Q78JW9 Lrig1-201ENSMUST00000032105 4831 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Ubfd1Q78JW9 Nsg1-201ENSMUST00000031009 2581 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Ubfd1Q78JW9 Arfip1-202ENSMUST00000107687 1714 ntTSL 5 BASIC16.41■□□□□ 0.22
Ubfd1Q78JW9 3110002H16Rik-201ENSMUST00000025276 2170 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Ubfd1Q78JW9 Gpr6-201ENSMUST00000061796 1786 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Ubfd1Q78JW9 Dnaaf5-203ENSMUST00000196441 2426 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Ubfd1Q78JW9 Apba3-201ENSMUST00000057798 2106 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Ubfd1Q78JW9 Med18-201ENSMUST00000102567 1675 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Ubfd1Q78JW9 Helt-201ENSMUST00000058636 1541 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Ubfd1Q78JW9 Pard3-209ENSMUST00000160272 5815 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Ubfd1Q78JW9 Mmp28-201ENSMUST00000021020 2311 ntAPPRIS P4 TSL 1 (best) BASIC16.4■□□□□ 0.22
Ubfd1Q78JW9 Ppp2r1b-204ENSMUST00000174628 2195 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Ubfd1Q78JW9 Crhbp-201ENSMUST00000045583 1701 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Ubfd1Q78JW9 Nt5dc3-201ENSMUST00000099396 5952 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Ubfd1Q78JW9 Haus4-201ENSMUST00000022784 1587 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Ubfd1Q78JW9 Rasgrp1-201ENSMUST00000102534 5229 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
Ubfd1Q78JW9 St3gal3-203ENSMUST00000106410 2225 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Ubfd1Q78JW9 Rilpl1-201ENSMUST00000062153 2249 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Ubfd1Q78JW9 Bub3-201ENSMUST00000084502 2218 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Ubfd1Q78JW9 Ppp1r2-202ENSMUST00000115233 958 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Ubfd1Q78JW9 Ighv6-1-201ENSMUST00000193612 343 ntBASIC16.4■□□□□ 0.22
Ubfd1Q78JW9 Gm45631-201ENSMUST00000210318 1244 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Ubfd1Q78JW9 Pitpnm2-210ENSMUST00000162812 6952 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
Ubfd1Q78JW9 Ust-201ENSMUST00000061601 4228 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Ubfd1Q78JW9 Il17re-208ENSMUST00000204774 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Ubfd1Q78JW9 Bnip2-203ENSMUST00000117450 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Ubfd1Q78JW9 Tbc1d2b-202ENSMUST00000128874 3473 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Ubfd1Q78JW9 Cldn7-201ENSMUST00000018713 1335 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Ubfd1Q78JW9 Wnt10b-204ENSMUST00000226655 1807 ntBASIC16.4■□□□□ 0.22
Ubfd1Q78JW9 Isyna1-204ENSMUST00000210005 1914 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
Ubfd1Q78JW9 Fdxr-201ENSMUST00000021078 1948 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Ubfd1Q78JW9 Gm26892-201ENSMUST00000181695 1636 ntTSL 5 BASIC16.39■□□□□ 0.21
Ubfd1Q78JW9 Bpifa3-202ENSMUST00000109746 1102 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Ubfd1Q78JW9 Rerg-204ENSMUST00000149100 635 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Ubfd1Q78JW9 Cd70-201ENSMUST00000019633 842 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Ubfd1Q78JW9 Slc35d2-204ENSMUST00000222168 472 ntTSL 3 BASIC16.39■□□□□ 0.21
Ubfd1Q78JW9 Ndufb8-201ENSMUST00000026222 680 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Ubfd1Q78JW9 Mgst3-201ENSMUST00000028005 1097 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Ubfd1Q78JW9 S100a16-202ENSMUST00000098911 1127 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Ubfd1Q78JW9 Lrp5-202ENSMUST00000176867 2759 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Ubfd1Q78JW9 Mink1-205ENSMUST00000102559 4865 ntAPPRIS P4 TSL 1 (best) BASIC16.39■□□□□ 0.21
Ubfd1Q78JW9 Arhgef25-212ENSMUST00000222006 1896 ntTSL 5 BASIC16.39■□□□□ 0.21
Ubfd1Q78JW9 Sbf1-205ENSMUST00000144585 6165 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Ubfd1Q78JW9 4930474H06Rik-201ENSMUST00000132822 1590 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Ubfd1Q78JW9 Cpd-201ENSMUST00000021201 7946 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Ubfd1Q78JW9 Map1lc3b-204ENSMUST00000181826 2633 ntBASIC16.38■□□□□ 0.21
Ubfd1Q78JW9 Mtmr3-202ENSMUST00000109943 5674 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Ubfd1Q78JW9 Pacsin1-202ENSMUST00000097360 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Ubfd1Q78JW9 Calb2-201ENSMUST00000003754 1431 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Ubfd1Q78JW9 Kat14-208ENSMUST00000147747 3299 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Ubfd1Q78JW9 U2af2-209ENSMUST00000209099 2088 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
Ubfd1Q78JW9 Wdr55-201ENSMUST00000049323 1498 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Ubfd1Q78JW9 Psmg4-201ENSMUST00000124996 474 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Ubfd1Q78JW9 4930401G09Rik-201ENSMUST00000139500 637 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Ubfd1Q78JW9 Snx15-207ENSMUST00000154601 767 ntTSL 5 BASIC16.38■□□□□ 0.21
Ubfd1Q78JW9 Fbxo6-208ENSMUST00000168503 1240 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
Ubfd1Q78JW9 Snhg4-201ENSMUST00000181664 1190 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Retrieved 100 of 76,532 protein–RNA pairs in 38.1 ms