Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Cacnb1-204ENSMUST00000107561 1778 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
ShhQ62226 Haus8-201ENSMUST00000035960 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
ShhQ62226 Kmt5b-202ENSMUST00000052699 3290 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.11
ShhQ62226 Pdap1-201ENSMUST00000031627 2353 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
ShhQ62226 Ntng1-207ENSMUST00000131027 1485 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
ShhQ62226 Ntng1-209ENSMUST00000138344 1452 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
ShhQ62226 Gm26781-201ENSMUST00000181385 1477 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
ShhQ62226 Ssu72-201ENSMUST00000030905 1472 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
ShhQ62226 Pld2-203ENSMUST00000108557 3655 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.1
ShhQ62226 Ltbp4-202ENSMUST00000108369 5377 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.1
ShhQ62226 Tbx20-202ENSMUST00000166018 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.1
ShhQ62226 2900052L18Rik-201ENSMUST00000139014 1588 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
ShhQ62226 Ets1-201ENSMUST00000034534 5080 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
ShhQ62226 Eva1c-201ENSMUST00000037539 1698 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
ShhQ62226 Hps4-201ENSMUST00000035279 2836 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
ShhQ62226 Psmd8-203ENSMUST00000186182 1512 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
ShhQ62226 Col11a2-203ENSMUST00000114255 5722 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
ShhQ62226 Il1rn-201ENSMUST00000114482 1986 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
ShhQ62226 4930401G09Rik-201ENSMUST00000139500 637 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
ShhQ62226 Pym1-202ENSMUST00000163377 1158 ntAPPRIS P4 TSL 1 (best) BASIC15.7■□□□□ 0.1
ShhQ62226 Gm38027-201ENSMUST00000192315 235 ntBASIC15.7■□□□□ 0.1
ShhQ62226 Rpl19-ps10-201ENSMUST00000205555 330 ntBASIC15.7■□□□□ 0.1
ShhQ62226 Gm5587-201ENSMUST00000206270 674 ntBASIC15.7■□□□□ 0.1
ShhQ62226 AC156832.2-201ENSMUST00000216217 1295 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
ShhQ62226 Pldi-201ENSMUST00000036304 853 ntTSL 2 BASIC15.7■□□□□ 0.1
ShhQ62226 Etfb-201ENSMUST00000004729 893 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
ShhQ62226 Apaf1-208ENSMUST00000162618 5151 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
ShhQ62226 Dnaja3-202ENSMUST00000115854 2505 ntAPPRIS ALT1 TSL 1 (best) BASIC15.7■□□□□ 0.1
ShhQ62226 Fam149b-216ENSMUST00000225942 2151 ntAPPRIS ALT2 BASIC15.7■□□□□ 0.1
ShhQ62226 Mex3a-201ENSMUST00000172699 5778 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
ShhQ62226 Ing4-205ENSMUST00000140131 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC15.69■□□□□ 0.1
ShhQ62226 Ric3-202ENSMUST00000120876 1633 ntAPPRIS ALT1 TSL 1 (best) BASIC15.69■□□□□ 0.1
ShhQ62226 Uso1-201ENSMUST00000031355 3898 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
ShhQ62226 Ece2-202ENSMUST00000122306 2495 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
ShhQ62226 Bex3-202ENSMUST00000113112 826 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
ShhQ62226 Gm13420-201ENSMUST00000129574 1091 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
ShhQ62226 Gm38282-201ENSMUST00000192751 695 ntTSL 5 BASIC15.69■□□□□ 0.1
ShhQ62226 Gm6443-201ENSMUST00000203599 874 ntBASIC15.69■□□□□ 0.1
ShhQ62226 P2ry1-203ENSMUST00000193943 2203 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
ShhQ62226 4933428P19Rik-201ENSMUST00000199616 1376 ntBASIC15.69■□□□□ 0.1
ShhQ62226 Jmy-201ENSMUST00000065537 8776 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
ShhQ62226 Lrp5-201ENSMUST00000025856 5161 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
ShhQ62226 St7l-202ENSMUST00000106769 2428 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
ShhQ62226 Klhl5-204ENSMUST00000204097 3149 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
ShhQ62226 Itgb1bp1-201ENSMUST00000076260 1874 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
ShhQ62226 Aurkb-201ENSMUST00000021277 1950 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
ShhQ62226 Nrxn2-202ENSMUST00000113458 3503 ntTSL 5 BASIC15.69■□□□□ 0.1
ShhQ62226 Btbd10-203ENSMUST00000119278 2394 ntTSL 5 BASIC15.69■□□□□ 0.1
ShhQ62226 Asb1-202ENSMUST00000086843 2490 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
ShhQ62226 Sept8-203ENSMUST00000120878 1806 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
ShhQ62226 Ptp4a2-201ENSMUST00000030578 3646 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
ShhQ62226 Rab11fip3-202ENSMUST00000120691 5103 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
ShhQ62226 Zbtb32-202ENSMUST00000108151 1775 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
ShhQ62226 Tgds-201ENSMUST00000022727 1682 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
ShhQ62226 Rogdi-207ENSMUST00000202281 1355 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
ShhQ62226 Gapdh-202ENSMUST00000117757 1273 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
ShhQ62226 Gm16061-201ENSMUST00000122167 857 ntBASIC15.68■□□□□ 0.1
ShhQ62226 Gm18958-201ENSMUST00000174258 762 ntBASIC15.68■□□□□ 0.1
ShhQ62226 Gm27389-201ENSMUST00000183622 195 ntBASIC15.68■□□□□ 0.1
ShhQ62226 Klf13-202ENSMUST00000183817 599 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
ShhQ62226 Mzt1-203ENSMUST00000227948 952 ntBASIC15.68■□□□□ 0.1
ShhQ62226 Flywch2-201ENSMUST00000024704 694 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
ShhQ62226 Idnk-201ENSMUST00000051490 764 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
ShhQ62226 Ripply2-201ENSMUST00000058846 503 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
ShhQ62226 Mrpl43-201ENSMUST00000097715 1213 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
ShhQ62226 Zswim8-201ENSMUST00000022358 6073 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
ShhQ62226 8030462N17Rik-201ENSMUST00000074653 3418 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
ShhQ62226 Gnb1-202ENSMUST00000105616 3088 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
ShhQ62226 Nfib-204ENSMUST00000107246 3075 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
ShhQ62226 Tubgcp4-203ENSMUST00000110658 4250 ntAPPRIS ALT1 TSL 1 (best) BASIC15.68■□□□□ 0.1
ShhQ62226 Tmem241-205ENSMUST00000209859 1426 ntAPPRIS P4 TSL 1 (best) BASIC15.68■□□□□ 0.1
ShhQ62226 Ddx28-201ENSMUST00000058579 2262 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
ShhQ62226 Mpped2-202ENSMUST00000111063 2848 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
ShhQ62226 Elk4-202ENSMUST00000086556 4433 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
ShhQ62226 Hmbox1-203ENSMUST00000175744 1771 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
ShhQ62226 Tmem94-202ENSMUST00000103033 5238 ntAPPRIS P2 TSL 2 BASIC15.67■□□□□ 0.1
ShhQ62226 Arhgap35-201ENSMUST00000075845 9147 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
ShhQ62226 Nipsnap3b-201ENSMUST00000015391 1552 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
ShhQ62226 Txnl1-201ENSMUST00000025476 2558 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
ShhQ62226 Blmh-201ENSMUST00000021197 2497 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
ShhQ62226 Med9-201ENSMUST00000081980 1920 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
ShhQ62226 Dbn1-202ENSMUST00000109921 2378 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
ShhQ62226 Donson-201ENSMUST00000023682 2360 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
ShhQ62226 Gm14114-201ENSMUST00000139345 287 ntTSL 3 BASIC15.67■□□□□ 0.1
ShhQ62226 Shisa5-218ENSMUST00000200515 1005 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
ShhQ62226 Cdk2ap2-201ENSMUST00000025779 1080 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
ShhQ62226 Olfr315-201ENSMUST00000081533 998 ntAPPRIS P1 BASIC15.67■□□□□ 0.1
ShhQ62226 Znhit1-202ENSMUST00000085941 740 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
ShhQ62226 Usp47-201ENSMUST00000106653 5540 ntAPPRIS P3 TSL 5 BASIC15.67■□□□□ 0.1
ShhQ62226 Gm6598-201ENSMUST00000202719 2615 ntBASIC15.67■□□□□ 0.1
ShhQ62226 Arhgef25-212ENSMUST00000222006 1896 ntTSL 5 BASIC15.67■□□□□ 0.1
ShhQ62226 Gm43338-201ENSMUST00000198617 2223 ntBASIC15.67■□□□□ 0.1
ShhQ62226 Aldh2-202ENSMUST00000129753 1799 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
ShhQ62226 Lrch4-201ENSMUST00000031734 3078 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
ShhQ62226 Mfsd10-202ENSMUST00000114329 1906 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
ShhQ62226 Gm38534-201ENSMUST00000206566 1909 ntTSL 5 BASIC15.66■□□□□ 0.1
ShhQ62226 Trabd-201ENSMUST00000081702 2439 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
ShhQ62226 Fdps-203ENSMUST00000196709 1382 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
ShhQ62226 Nhs-201ENSMUST00000081569 4881 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
ShhQ62226 Sap18-202ENSMUST00000111268 662 ntTSL 2 BASIC15.66■□□□□ 0.1
Retrieved 100 of 76,532 protein–RNA pairs in 17 ms