Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 Rhbdf1-201ENSMUST00000020524 2946 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
Col11a1Q61245 Fam57b-201ENSMUST00000079423 2328 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Col11a1Q61245 Uba52-203ENSMUST00000125184 711 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Col11a1Q61245 Gm11795-201ENSMUST00000127180 396 ntTSL 5 BASIC18.89■□□□□ 0.61
Col11a1Q61245 AC127349.1-201ENSMUST00000224590 266 ntBASIC18.89■□□□□ 0.61
Col11a1Q61245 Igflr1-201ENSMUST00000043850 1186 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.61
Col11a1Q61245 Nap1l1-206ENSMUST00000219143 1365 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Col11a1Q61245 Psmc4-201ENSMUST00000032824 1440 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Col11a1Q61245 AI846148-201ENSMUST00000025924 3183 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Col11a1Q61245 Eml4-201ENSMUST00000049503 5109 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
Col11a1Q61245 Snhg15-203ENSMUST00000134527 675 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Col11a1Q61245 Gm11780-201ENSMUST00000136880 516 ntBASIC18.88■□□□□ 0.61
Col11a1Q61245 Amdhd1-201ENSMUST00000016034 2421 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Col11a1Q61245 Apbb1-205ENSMUST00000187057 1630 ntTSL 5 BASIC18.88■□□□□ 0.61
Col11a1Q61245 Gm29430-202ENSMUST00000191453 2015 ntTSL 5 BASIC18.88■□□□□ 0.61
Col11a1Q61245 Il17re-205ENSMUST00000203661 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Col11a1Q61245 Gm44081-201ENSMUST00000204406 643 ntTSL 3 BASIC18.88■□□□□ 0.61
Col11a1Q61245 AC090659.1-201ENSMUST00000224334 768 ntBASIC18.88■□□□□ 0.61
Col11a1Q61245 Tmem52-201ENSMUST00000023920 932 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Col11a1Q61245 Echdc2-201ENSMUST00000052999 1307 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Col11a1Q61245 Sh3bp1-202ENSMUST00000061239 1917 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Col11a1Q61245 Prdm5-203ENSMUST00000081219 984 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Col11a1Q61245 Slc25a16-201ENSMUST00000044977 3145 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Col11a1Q61245 Pfn2-201ENSMUST00000066882 2342 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Col11a1Q61245 Mettl27-205ENSMUST00000111221 1796 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Col11a1Q61245 Hist1h4a-201ENSMUST00000102964 539 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
Col11a1Q61245 A830031A19Rik-201ENSMUST00000068360 757 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Col11a1Q61245 1500035N22Rik-201ENSMUST00000075081 865 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Col11a1Q61245 Stk32c-202ENSMUST00000165870 1883 ntTSL 5 BASIC18.87■□□□□ 0.61
Col11a1Q61245 1500011B03Rik-202ENSMUST00000112160 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Col11a1Q61245 Rhbdl1-202ENSMUST00000183929 1349 ntTSL 5 BASIC18.87■□□□□ 0.61
Col11a1Q61245 Zfp688-201ENSMUST00000106300 1015 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
Col11a1Q61245 Men1-205ENSMUST00000113501 2508 ntTSL 5 BASIC18.87■□□□□ 0.61
Col11a1Q61245 Prss8-201ENSMUST00000032988 1852 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Col11a1Q61245 St8sia5-201ENSMUST00000075290 1841 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Col11a1Q61245 Acaa1a-201ENSMUST00000039784 1762 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Col11a1Q61245 Adam15-203ENSMUST00000107446 1686 ntTSL 5 BASIC18.87■□□□□ 0.61
Col11a1Q61245 Nmnat3-201ENSMUST00000112935 2166 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Col11a1Q61245 Cd37-204ENSMUST00000209779 2541 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Col11a1Q61245 Rac1-202ENSMUST00000100489 2325 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Col11a1Q61245 Dnaja4-202ENSMUST00000120452 1827 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Col11a1Q61245 Mrpl39-201ENSMUST00000116584 2294 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Col11a1Q61245 Zbtb24-202ENSMUST00000213797 2734 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Col11a1Q61245 Hsdl1-201ENSMUST00000036049 3141 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Col11a1Q61245 Gm2694-204ENSMUST00000181898 1303 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Col11a1Q61245 Gssos1-201ENSMUST00000142509 716 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Col11a1Q61245 Triqk-201ENSMUST00000143186 888 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Col11a1Q61245 AC151286.1-201ENSMUST00000198489 145 ntBASIC18.86■□□□□ 0.61
Col11a1Q61245 Gm44662-201ENSMUST00000206970 412 ntTSL 5 BASIC18.86■□□□□ 0.61
Col11a1Q61245 Hist2h3b-201ENSMUST00000098843 488 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
Col11a1Q61245 Zmiz2-201ENSMUST00000012612 4199 ntAPPRIS P2 TSL 5 BASIC18.86■□□□□ 0.61
Col11a1Q61245 Nrn1-201ENSMUST00000037623 1619 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Col11a1Q61245 Pomgnt2-201ENSMUST00000084743 2365 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Col11a1Q61245 C130026I21Rik-201ENSMUST00000064341 1561 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
Col11a1Q61245 Fam193b-201ENSMUST00000021957 4341 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Col11a1Q61245 Gm45203-201ENSMUST00000206384 1831 ntBASIC18.86■□□□□ 0.61
Col11a1Q61245 A230072C01Rik-202ENSMUST00000136447 1412 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Col11a1Q61245 Gm14221-202ENSMUST00000209603 1437 ntTSL 5 BASIC18.86■□□□□ 0.61
Col11a1Q61245 Gm15598-201ENSMUST00000156965 763 ntTSL 5 BASIC18.86■□□□□ 0.61
Col11a1Q61245 1810008I18Rik-202ENSMUST00000187848 819 ntTSL 3 BASIC18.86■□□□□ 0.61
Col11a1Q61245 Mrps36-202ENSMUST00000078573 571 ntAPPRIS ALT1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Col11a1Q61245 Gm10505-201ENSMUST00000151398 1587 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Col11a1Q61245 Gde1-201ENSMUST00000038791 1582 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Col11a1Q61245 Prlhr-201ENSMUST00000051277 1572 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
Col11a1Q61245 Slc29a1-222ENSMUST00000171847 2033 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
Col11a1Q61245 Keap1-206ENSMUST00000216436 2498 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
Col11a1Q61245 Ift74-201ENSMUST00000030311 2139 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
Col11a1Q61245 Zpbp2-203ENSMUST00000107509 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Col11a1Q61245 Apof-201ENSMUST00000050901 1258 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Col11a1Q61245 A130006I12Rik-201ENSMUST00000091396 408 ntBASIC18.85■□□□□ 0.61
Col11a1Q61245 Lcmt2-201ENSMUST00000099486 2047 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Col11a1Q61245 Dut-201ENSMUST00000051605 1950 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Col11a1Q61245 Mif4gd-203ENSMUST00000106507 1656 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Col11a1Q61245 Sars2-201ENSMUST00000094632 1868 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Col11a1Q61245 Arhgef26-201ENSMUST00000079300 5638 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Col11a1Q61245 Hikeshi-206ENSMUST00000153470 2224 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Col11a1Q61245 Cope-201ENSMUST00000066469 1300 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Col11a1Q61245 Atad3a-201ENSMUST00000030903 2413 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Col11a1Q61245 Gm15706-201ENSMUST00000139612 899 ntTSL 2 BASIC18.84■□□□□ 0.61
Col11a1Q61245 H2-Bl-211ENSMUST00000195838 1105 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Col11a1Q61245 AL731706.1-201ENSMUST00000227806 944 ntAPPRIS ALT2 BASIC18.84■□□□□ 0.61
Col11a1Q61245 Olfr541-201ENSMUST00000080681 1103 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
Col11a1Q61245 Chchd2-201ENSMUST00000094280 915 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Col11a1Q61245 Rhoq-201ENSMUST00000024956 4151 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Col11a1Q61245 Slc1a6-201ENSMUST00000005490 2029 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Col11a1Q61245 Icam5-201ENSMUST00000019616 2947 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Col11a1Q61245 Pde1b-201ENSMUST00000023132 3218 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Col11a1Q61245 Nudt19-201ENSMUST00000040962 2298 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Col11a1Q61245 Abat-202ENSMUST00000115838 1348 ntTSL 2 BASIC18.84■□□□□ 0.61
Col11a1Q61245 Arhgef9-216ENSMUST00000197206 2227 ntTSL 5 BASIC18.84■□□□□ 0.61
Col11a1Q61245 Gdap1l1-203ENSMUST00000109421 1206 ntAPPRIS ALT1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Col11a1Q61245 Gm28050-201ENSMUST00000124394 449 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Col11a1Q61245 Chchd1-203ENSMUST00000224633 557 ntBASIC18.84■□□□□ 0.61
Col11a1Q61245 Mrpl46-201ENSMUST00000032841 1134 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Col11a1Q61245 1600017P15Rik-201ENSMUST00000083427 412 ntBASIC18.84■□□□□ 0.61
Col11a1Q61245 Rtkn-203ENSMUST00000121093 2597 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.61
Col11a1Q61245 Ruvbl2-201ENSMUST00000107771 1834 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Col11a1Q61245 1700029H14Rik-203ENSMUST00000134023 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
Col11a1Q61245 Fuz-213ENSMUST00000209039 1453 ntTSL 5 BASIC18.83■□□□□ 0.6
Col11a1Q61245 Thap7-201ENSMUST00000100125 1248 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Retrieved 100 of 76,532 protein–RNA pairs in 17.3 ms