Protein–RNA interactions for Protein: Q5SPW0

Vps54, Vacuolar protein sorting-associated protein 54, mousemouse

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps54Q5SPW0 Usb1-201ENSMUST00000034245 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Vps54Q5SPW0 Smpdl3b-201ENSMUST00000030709 2006 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Vps54Q5SPW0 D730003I15Rik-202ENSMUST00000194375 1667 ntBASIC20.25■□□□□ 0.83
Vps54Q5SPW0 Pcolce-202ENSMUST00000054564 1585 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
Vps54Q5SPW0 Acss2-202ENSMUST00000065973 2876 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Vps54Q5SPW0 Abhd13-201ENSMUST00000048216 5074 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Vps54Q5SPW0 Sh3bp1-201ENSMUST00000001226 2510 ntTSL 5 BASIC20.24■□□□□ 0.83
Vps54Q5SPW0 Zufsp-202ENSMUST00000218055 2180 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Vps54Q5SPW0 Ogg1-201ENSMUST00000032406 1549 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Vps54Q5SPW0 Cap1-202ENSMUST00000106255 2737 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Vps54Q5SPW0 Pick1-206ENSMUST00000166155 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Vps54Q5SPW0 Fndc11-202ENSMUST00000108835 1154 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
Vps54Q5SPW0 Hist1h2bj-201ENSMUST00000110452 463 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
Vps54Q5SPW0 Hist1h2bp-202ENSMUST00000110473 621 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Vps54Q5SPW0 Hist1h2bm-201ENSMUST00000224651 524 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
Vps54Q5SPW0 Snrnp35-201ENSMUST00000031349 1115 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Vps54Q5SPW0 Inmt-201ENSMUST00000003569 1077 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Vps54Q5SPW0 Mcl1-201ENSMUST00000037947 3418 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Vps54Q5SPW0 Napa-201ENSMUST00000006181 2517 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Vps54Q5SPW0 Haus4-201ENSMUST00000022784 1587 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Vps54Q5SPW0 Synm-205ENSMUST00000208815 2697 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
Vps54Q5SPW0 Sult2b1-204ENSMUST00000209739 1858 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
Vps54Q5SPW0 5830415G21Rik-201ENSMUST00000192543 1332 ntBASIC20.24■□□□□ 0.83
Vps54Q5SPW0 Msmo1-201ENSMUST00000034015 2044 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Vps54Q5SPW0 Ccdc6-203ENSMUST00000147545 5511 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
Vps54Q5SPW0 Stard6-201ENSMUST00000114959 1496 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Vps54Q5SPW0 Capzb-202ENSMUST00000042675 1604 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Vps54Q5SPW0 Cops6-201ENSMUST00000019638 1787 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Vps54Q5SPW0 Gm5898-201ENSMUST00000121016 2071 ntBASIC20.23■□□□□ 0.83
Vps54Q5SPW0 Gm6190-201ENSMUST00000220683 1374 ntBASIC20.23■□□□□ 0.83
Vps54Q5SPW0 Col15a1-202ENSMUST00000102917 5172 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Vps54Q5SPW0 Lmo4-203ENSMUST00000121796 1417 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Vps54Q5SPW0 Zfp629-206ENSMUST00000132524 215 ntTSL 5 BASIC20.23■□□□□ 0.83
Vps54Q5SPW0 Gm16638-201ENSMUST00000148687 1865 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Vps54Q5SPW0 Gm8797-201ENSMUST00000192045 490 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
Vps54Q5SPW0 Tle4-201ENSMUST00000052011 4555 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Vps54Q5SPW0 Ubxn11-202ENSMUST00000074690 1573 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Vps54Q5SPW0 Asap2-204ENSMUST00000101562 5552 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Vps54Q5SPW0 AU022751-202ENSMUST00000117544 2201 ntAPPRIS P4 BASIC20.23■□□□□ 0.83
Vps54Q5SPW0 Mst1-204ENSMUST00000162886 2209 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
Vps54Q5SPW0 Arpc1a-201ENSMUST00000031625 1632 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Vps54Q5SPW0 Auh-201ENSMUST00000021913 1320 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Vps54Q5SPW0 Trim44-201ENSMUST00000102573 5612 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Vps54Q5SPW0 Gtf2h4-201ENSMUST00000001565 1679 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Vps54Q5SPW0 Xylt1-201ENSMUST00000032892 9020 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Vps54Q5SPW0 Spats2l-212ENSMUST00000170139 2315 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
Vps54Q5SPW0 Cyr61-201ENSMUST00000029846 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Vps54Q5SPW0 Isl2-201ENSMUST00000034869 1854 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Vps54Q5SPW0 Mink1-201ENSMUST00000072237 4994 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
Vps54Q5SPW0 Rock2-201ENSMUST00000020904 7644 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
Vps54Q5SPW0 Rragd-201ENSMUST00000029946 5055 ntTSL 5 BASIC20.22■□□□□ 0.83
Vps54Q5SPW0 Tnfrsf13c-201ENSMUST00000089161 1906 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Vps54Q5SPW0 Gm11860-201ENSMUST00000122346 1010 ntBASIC20.22■□□□□ 0.83
Vps54Q5SPW0 Gm13025-201ENSMUST00000141469 1163 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Vps54Q5SPW0 Cdpf1-204ENSMUST00000144067 761 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
Vps54Q5SPW0 Gm5587-201ENSMUST00000206270 674 ntBASIC20.22■□□□□ 0.83
Vps54Q5SPW0 Eif3h-201ENSMUST00000022925 1295 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Vps54Q5SPW0 Zfp524-201ENSMUST00000086349 1142 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Vps54Q5SPW0 Snip1-201ENSMUST00000052183 2345 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Vps54Q5SPW0 Klhdc8a-201ENSMUST00000046071 4269 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Vps54Q5SPW0 Irf5-205ENSMUST00000167252 1693 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Vps54Q5SPW0 Gm19569-202ENSMUST00000184658 1305 ntTSL 2 BASIC20.22■□□□□ 0.83
Vps54Q5SPW0 Wac-207ENSMUST00000167020 5208 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
Vps54Q5SPW0 Slc16a7-205ENSMUST00000210780 2562 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
Vps54Q5SPW0 Bud23-202ENSMUST00000085984 1516 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Vps54Q5SPW0 Fosl1-201ENSMUST00000025850 1707 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Vps54Q5SPW0 Rusc1-203ENSMUST00000166687 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Vps54Q5SPW0 Ino80e-203ENSMUST00000106343 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Vps54Q5SPW0 Ahcyl2-202ENSMUST00000102995 5155 ntAPPRIS ALT1 TSL 5 BASIC20.21■□□□□ 0.83
Vps54Q5SPW0 Slc6a8-206ENSMUST00000164449 2151 ntTSL 5 BASIC20.21■□□□□ 0.83
Vps54Q5SPW0 Tdrd12-201ENSMUST00000032701 1620 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Vps54Q5SPW0 Tppp3-201ENSMUST00000014990 1127 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Vps54Q5SPW0 Pagr1a-203ENSMUST00000206416 558 ntTSL 3 BASIC20.21■□□□□ 0.83
Vps54Q5SPW0 Prss27-201ENSMUST00000059482 1253 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Vps54Q5SPW0 Rln3-201ENSMUST00000061923 634 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Vps54Q5SPW0 C530025M09Rik-201ENSMUST00000099264 690 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
Vps54Q5SPW0 Pitpnm1-201ENSMUST00000049658 4206 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Vps54Q5SPW0 Cul4a-201ENSMUST00000016680 3728 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Vps54Q5SPW0 Stk39-201ENSMUST00000102715 3536 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Vps54Q5SPW0 Glrx2-210ENSMUST00000185362 3337 ntAPPRIS P4 TSL 1 (best) BASIC20.21■□□□□ 0.83
Vps54Q5SPW0 Pgm3-202ENSMUST00000072585 1920 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Vps54Q5SPW0 Crhbp-201ENSMUST00000045583 1701 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Vps54Q5SPW0 Relb-201ENSMUST00000049912 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Vps54Q5SPW0 Eif2b4-201ENSMUST00000077693 2025 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.83
Vps54Q5SPW0 Nsmf-201ENSMUST00000006646 2922 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
Vps54Q5SPW0 Sprtn-201ENSMUST00000034467 4464 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Vps54Q5SPW0 Snrpd2-201ENSMUST00000049294 1420 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Vps54Q5SPW0 Tbcb-201ENSMUST00000006254 1416 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Vps54Q5SPW0 Tyk2-205ENSMUST00000214864 1662 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Vps54Q5SPW0 Gm26627-201ENSMUST00000181540 1487 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Vps54Q5SPW0 Fjx1-201ENSMUST00000099678 3134 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
Vps54Q5SPW0 Gm11336-201ENSMUST00000118168 334 ntBASIC20.2■□□□□ 0.82
Vps54Q5SPW0 Gm9013-201ENSMUST00000132939 882 ntBASIC20.2■□□□□ 0.82
Vps54Q5SPW0 Surf1-201ENSMUST00000015934 1173 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Vps54Q5SPW0 4930505N22Rik-201ENSMUST00000181820 945 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Vps54Q5SPW0 Smarca4-202ENSMUST00000098948 6376 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Vps54Q5SPW0 Rnf128-201ENSMUST00000113026 2750 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Vps54Q5SPW0 Gprin1-202ENSMUST00000135343 4248 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Vps54Q5SPW0 Zbtb5-204ENSMUST00000180217 4708 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
Vps54Q5SPW0 Myrip-201ENSMUST00000048121 4906 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Retrieved 100 of 76,532 protein–RNA pairs in 19.9 ms