Protein–RNA interactions for Protein: Q3V0C5

Usp48, Ubiquitin carboxyl-terminal hydrolase 48, mousemouse

Predictions only

Length 1,052 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp48Q3V0C5 Trmo-201ENSMUST00000030015 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.92
Usp48Q3V0C5 Ctsf-201ENSMUST00000119694 1975 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Usp48Q3V0C5 Slc7a10-201ENSMUST00000001854 1953 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Usp48Q3V0C5 Mef2d-202ENSMUST00000107558 1767 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Usp48Q3V0C5 Smad1-202ENSMUST00000066091 3099 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Usp48Q3V0C5 Eri1-201ENSMUST00000033927 5079 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Usp48Q3V0C5 Inip-202ENSMUST00000107526 1438 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Usp48Q3V0C5 Sri-205ENSMUST00000148633 2251 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Usp48Q3V0C5 Gm16181-201ENSMUST00000118793 567 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Usp48Q3V0C5 Mpst-202ENSMUST00000167140 1279 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
Usp48Q3V0C5 E2f7-205ENSMUST00000173634 827 ntTSL 2 BASIC20.82■□□□□ 0.92
Usp48Q3V0C5 Gm18733-201ENSMUST00000173950 856 ntBASIC20.82■□□□□ 0.92
Usp48Q3V0C5 Snhg4-201ENSMUST00000181664 1190 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Usp48Q3V0C5 Gm37025-201ENSMUST00000195159 829 ntBASIC20.82■□□□□ 0.92
Usp48Q3V0C5 Gm45669-201ENSMUST00000209808 459 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Usp48Q3V0C5 Pdrg1-201ENSMUST00000028972 1273 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Usp48Q3V0C5 Rnpc3-203ENSMUST00000106536 1839 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
Usp48Q3V0C5 Spata2l-201ENSMUST00000098327 2380 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Usp48Q3V0C5 Fam131b-203ENSMUST00000143278 4104 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
Usp48Q3V0C5 Ndor1-202ENSMUST00000114349 2336 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Usp48Q3V0C5 Fhdc1-205ENSMUST00000194027 1648 ntTSL 5 BASIC20.82■□□□□ 0.92
Usp48Q3V0C5 Zfp119b-201ENSMUST00000056147 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Usp48Q3V0C5 Mipol1-201ENSMUST00000123498 2117 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
Usp48Q3V0C5 Matn4-202ENSMUST00000103104 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Usp48Q3V0C5 Cldn4-201ENSMUST00000051401 1816 ntAPPRIS P1 BASIC20.81■□□□□ 0.92
Usp48Q3V0C5 Cntln-201ENSMUST00000047023 5528 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
Usp48Q3V0C5 Gm3488-202ENSMUST00000181562 1945 ntAPPRIS P5 TSL 5 BASIC20.81■□□□□ 0.92
Usp48Q3V0C5 Pdx1-201ENSMUST00000085591 2158 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Usp48Q3V0C5 Zfp133-ps-202ENSMUST00000124788 1079 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Usp48Q3V0C5 Gm12536-201ENSMUST00000129102 358 ntTSL 2 BASIC20.81■□□□□ 0.92
Usp48Q3V0C5 Mkln1os-202ENSMUST00000144232 964 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Usp48Q3V0C5 Tnnt2-205ENSMUST00000178204 1172 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
Usp48Q3V0C5 Tnnt2-207ENSMUST00000179863 1097 ntAPPRIS P4 TSL 5 BASIC20.81■□□□□ 0.92
Usp48Q3V0C5 Gm26871-202ENSMUST00000180774 695 ntTSL 2 BASIC20.81■□□□□ 0.92
Usp48Q3V0C5 Tnnt2-209ENSMUST00000188028 1200 ntAPPRIS P4 TSL 5 BASIC20.81■□□□□ 0.92
Usp48Q3V0C5 Cklf-201ENSMUST00000034342 667 ntAPPRIS P4 TSL 1 (best) BASIC20.81■□□□□ 0.92
Usp48Q3V0C5 Lcorl-202ENSMUST00000045586 5708 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Usp48Q3V0C5 A930001A20Rik-201ENSMUST00000182586 1366 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Usp48Q3V0C5 Stard6-201ENSMUST00000114959 1496 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Usp48Q3V0C5 Tmem175-204ENSMUST00000146207 1686 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Usp48Q3V0C5 Rgmb-201ENSMUST00000170578 2633 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Usp48Q3V0C5 Setdb2-202ENSMUST00000111253 1774 ntTSL 2 BASIC20.8■□□□□ 0.92
Usp48Q3V0C5 Fcgrt-201ENSMUST00000003512 1770 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
Usp48Q3V0C5 Nt5dc3-201ENSMUST00000099396 5952 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Usp48Q3V0C5 Gm16861-201ENSMUST00000181498 1647 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Usp48Q3V0C5 Dusp13-208ENSMUST00000183698 1019 ntTSL 5 BASIC20.8■□□□□ 0.92
Usp48Q3V0C5 Cd70-201ENSMUST00000019633 842 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Usp48Q3V0C5 Cldn19-201ENSMUST00000084309 924 ntAPPRIS P4 TSL 1 (best) BASIC20.8■□□□□ 0.92
Usp48Q3V0C5 Zfp697-202ENSMUST00000178372 4703 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
Usp48Q3V0C5 Pea15a-201ENSMUST00000013842 2501 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Usp48Q3V0C5 Papola-203ENSMUST00000163473 2544 ntTSL 5 BASIC20.8■□□□□ 0.92
Usp48Q3V0C5 Rab40c-207ENSMUST00000167626 2506 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Usp48Q3V0C5 Shroom3-211ENSMUST00000225438 5742 ntBASIC20.8■□□□□ 0.92
Usp48Q3V0C5 Pcnx-204ENSMUST00000221721 8318 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
Usp48Q3V0C5 Gm19439-201ENSMUST00000198195 2273 ntBASIC20.8■□□□□ 0.92
Usp48Q3V0C5 Fam69a-201ENSMUST00000031198 2721 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Usp48Q3V0C5 Gpr84-201ENSMUST00000079824 1550 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Usp48Q3V0C5 Fbrsl1-206ENSMUST00000198834 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
Usp48Q3V0C5 Eps8-201ENSMUST00000058210 4567 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Usp48Q3V0C5 Mff-202ENSMUST00000078332 1894 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Usp48Q3V0C5 Arpc4-201ENSMUST00000156898 2270 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Usp48Q3V0C5 Lpgat1-202ENSMUST00000110856 2792 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Usp48Q3V0C5 Nfatc3-201ENSMUST00000109308 5984 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
Usp48Q3V0C5 Cd82-204ENSMUST00000111257 1003 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
Usp48Q3V0C5 Gm2431-201ENSMUST00000171531 519 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
Usp48Q3V0C5 Gm37935-201ENSMUST00000192012 982 ntBASIC20.79■□□□□ 0.92
Usp48Q3V0C5 F420014N23Rik-202ENSMUST00000219079 659 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Usp48Q3V0C5 4930505A04Rik-201ENSMUST00000041763 904 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
Usp48Q3V0C5 Fbxo36-201ENSMUST00000097672 901 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Usp48Q3V0C5 Bcor-206ENSMUST00000124033 6785 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
Usp48Q3V0C5 Mtmr3-202ENSMUST00000109943 5674 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Usp48Q3V0C5 Gm20460-201ENSMUST00000168709 1572 ntTSL 5 BASIC20.79■□□□□ 0.92
Usp48Q3V0C5 Arl1-202ENSMUST00000116234 2080 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Usp48Q3V0C5 Gprin1-202ENSMUST00000135343 4248 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Usp48Q3V0C5 Lrrfip2-202ENSMUST00000098340 3191 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
Usp48Q3V0C5 Cmtm3-201ENSMUST00000034343 1616 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Usp48Q3V0C5 Mapre3-201ENSMUST00000031058 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Usp48Q3V0C5 Nespas-203ENSMUST00000151472 2248 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Usp48Q3V0C5 Sec1-201ENSMUST00000040636 2470 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Usp48Q3V0C5 Idnk-204ENSMUST00000226010 1898 ntBASIC20.78■□□□□ 0.92
Usp48Q3V0C5 Pmepa1-201ENSMUST00000036248 4538 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Usp48Q3V0C5 Ndufaf8-201ENSMUST00000106223 781 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Usp48Q3V0C5 Gm11452-201ENSMUST00000122376 690 ntBASIC20.78■□□□□ 0.92
Usp48Q3V0C5 Gm44924-201ENSMUST00000138087 421 ntTSL 3 BASIC20.78■□□□□ 0.92
Usp48Q3V0C5 Edf1-201ENSMUST00000015236 722 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Usp48Q3V0C5 Gm27525-201ENSMUST00000184465 107 ntBASIC20.78■□□□□ 0.92
Usp48Q3V0C5 Ighv6-1-201ENSMUST00000193612 343 ntBASIC20.78■□□□□ 0.92
Usp48Q3V0C5 Nudt21-204ENSMUST00000212981 1184 ntTSL 3 BASIC20.78■□□□□ 0.92
Usp48Q3V0C5 Rln3-201ENSMUST00000061923 634 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Usp48Q3V0C5 Ttc13-201ENSMUST00000041614 3038 ntTSL 2 BASIC20.78■□□□□ 0.92
Usp48Q3V0C5 Ppp2r5d-201ENSMUST00000002839 2926 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Usp48Q3V0C5 Best2-203ENSMUST00000209421 2212 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Usp48Q3V0C5 Lhx6-205ENSMUST00000112967 3378 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Usp48Q3V0C5 Tmem80-201ENSMUST00000026578 1800 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Usp48Q3V0C5 Nek9-201ENSMUST00000040992 5386 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Usp48Q3V0C5 A930029G22Rik-201ENSMUST00000181032 1710 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Usp48Q3V0C5 Prmt9-202ENSMUST00000118622 2768 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
Usp48Q3V0C5 4833445I07Rik-201ENSMUST00000193193 1642 ntBASIC20.78■□□□□ 0.92
Usp48Q3V0C5 Glrx2-210ENSMUST00000185362 3337 ntAPPRIS P4 TSL 1 (best) BASIC20.78■□□□□ 0.92
Usp48Q3V0C5 Nptxr-203ENSMUST00000175858 4948 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
Retrieved 100 of 76,532 protein–RNA pairs in 23.4 ms