Protein–RNA interactions for Protein: P53783

Sox1, Transcription factor SOX-1, mousemouse

Predictions only

Length 391 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox1P53783 Podxl2-202ENSMUST00000061262 2195 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
Sox1P53783 Fam129b-201ENSMUST00000028135 3714 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Sox1P53783 Fgf3-201ENSMUST00000105898 2299 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Sox1P53783 Trim67-201ENSMUST00000041106 5694 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Sox1P53783 Slain2-202ENSMUST00000144843 4833 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Sox1P53783 Sfn-201ENSMUST00000057311 1613 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
Sox1P53783 Trp73-203ENSMUST00000105643 1916 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
Sox1P53783 Nipsnap3b-201ENSMUST00000015391 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Sox1P53783 Rimklb-201ENSMUST00000068242 4725 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Sox1P53783 Ch25h-201ENSMUST00000050562 1350 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
Sox1P53783 Gm13186-201ENSMUST00000118031 316 ntBASIC17.21■□□□□ 0.35
Sox1P53783 Gm6184-201ENSMUST00000120403 1261 ntBASIC17.21■□□□□ 0.35
Sox1P53783 Ms4a6d-202ENSMUST00000125291 679 ntTSL 3 BASIC17.21■□□□□ 0.35
Sox1P53783 1700003M07Rik-202ENSMUST00000147634 564 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Sox1P53783 AA543401-201ENSMUST00000164248 1269 ntBASIC17.21■□□□□ 0.35
Sox1P53783 1110035H17Rik-202ENSMUST00000205672 1231 ntBASIC17.21■□□□□ 0.35
Sox1P53783 Gm26646-202ENSMUST00000205705 439 ntTSL 5 BASIC17.21■□□□□ 0.35
Sox1P53783 Mrps36-202ENSMUST00000078573 571 ntAPPRIS ALT1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Sox1P53783 1700086L19Rik-201ENSMUST00000095617 706 ntBASIC17.21■□□□□ 0.35
Sox1P53783 Kcnd3-202ENSMUST00000098761 7169 ntAPPRIS ALT1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Sox1P53783 Gm9725-202ENSMUST00000166229 2326 ntTSL 5 BASIC17.21■□□□□ 0.35
Sox1P53783 Znhit6-201ENSMUST00000098534 2339 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
Sox1P53783 Nup85-201ENSMUST00000021085 2230 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Sox1P53783 Celf5-203ENSMUST00000120508 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Sox1P53783 Bud23-201ENSMUST00000071677 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Sox1P53783 Gpd1l-201ENSMUST00000084853 1436 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
Sox1P53783 Fam71b-201ENSMUST00000063166 2185 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
Sox1P53783 Pacsin3-203ENSMUST00000111349 1993 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Sox1P53783 Jag1-201ENSMUST00000028735 5612 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Sox1P53783 Dhx36-201ENSMUST00000029336 5620 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Sox1P53783 Scarb1-201ENSMUST00000086075 2521 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Sox1P53783 Epc2-201ENSMUST00000092123 4697 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Sox1P53783 Krt80-201ENSMUST00000077196 1774 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Sox1P53783 Alg3-201ENSMUST00000045918 1451 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Sox1P53783 Gab1-202ENSMUST00000210676 4985 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Sox1P53783 Gm28111-201ENSMUST00000187786 1393 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Sox1P53783 Kir3dl1-201ENSMUST00000113104 1031 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Sox1P53783 2410004I01Rik-201ENSMUST00000138424 1187 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Sox1P53783 Coa3-201ENSMUST00000017332 886 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Sox1P53783 Mrgpra9-201ENSMUST00000098436 1049 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
Sox1P53783 Kirrel-201ENSMUST00000041732 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Sox1P53783 Ccdc6-203ENSMUST00000147545 5511 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
Sox1P53783 Gm26892-201ENSMUST00000181695 1636 ntTSL 5 BASIC17.2■□□□□ 0.34
Sox1P53783 Ing4-201ENSMUST00000032480 1629 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Sox1P53783 Plekhg3-201ENSMUST00000075249 5138 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Sox1P53783 Ptgfrn-201ENSMUST00000102694 5902 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Sox1P53783 Spata18-202ENSMUST00000071077 1978 ntAPPRIS P2 TSL 5 BASIC17.2■□□□□ 0.34
Sox1P53783 Acads-201ENSMUST00000031524 1870 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Sox1P53783 Mex3d-201ENSMUST00000105350 3266 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Sox1P53783 Dusp13-202ENSMUST00000119866 1342 ntTSL 5 BASIC17.2■□□□□ 0.34
Sox1P53783 Luc7l2-201ENSMUST00000057692 2702 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Sox1P53783 Obsl1-202ENSMUST00000113567 5679 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Sox1P53783 Hmg20b-201ENSMUST00000020454 1621 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Sox1P53783 Thap3-202ENSMUST00000105665 832 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Sox1P53783 Chchd7-208ENSMUST00000121651 620 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Sox1P53783 Gm16156-201ENSMUST00000141168 713 ntTSL 3 BASIC17.19■□□□□ 0.34
Sox1P53783 Gm15862-201ENSMUST00000146349 361 ntTSL 2 BASIC17.19■□□□□ 0.34
Sox1P53783 Chchd7-201ENSMUST00000041122 672 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Sox1P53783 Timm10b-201ENSMUST00000058333 694 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Sox1P53783 H2-K1-202ENSMUST00000087189 579 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Sox1P53783 Mgat4b-201ENSMUST00000041725 2429 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Sox1P53783 Itgb4-210ENSMUST00000169928 6160 ntAPPRIS P2 TSL 5 BASIC17.19■□□□□ 0.34
Sox1P53783 Gm45447-201ENSMUST00000209874 1805 ntTSL 5 BASIC17.19■□□□□ 0.34
Sox1P53783 Cd40-202ENSMUST00000073707 1596 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Sox1P53783 4921511I17Rik-201ENSMUST00000220545 1341 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Sox1P53783 Scaf8-201ENSMUST00000076734 4869 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Sox1P53783 Neurl1b-201ENSMUST00000053020 6195 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Sox1P53783 Acp7-201ENSMUST00000040112 1978 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Sox1P53783 Atad2b-201ENSMUST00000045664 8035 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
Sox1P53783 Cwh43-202ENSMUST00000065543 2316 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Sox1P53783 Npepl1-201ENSMUST00000044415 2467 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Sox1P53783 Arhgap27os1-201ENSMUST00000130556 923 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Sox1P53783 0610025J13Rik-201ENSMUST00000131324 652 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Sox1P53783 Gm11025-201ENSMUST00000140773 466 ntBASIC17.18■□□□□ 0.34
Sox1P53783 Esd-207ENSMUST00000176957 1117 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Sox1P53783 Gm37171-201ENSMUST00000192636 1185 ntBASIC17.18■□□□□ 0.34
Sox1P53783 AC171004.1-201ENSMUST00000221723 664 ntTSL 3 BASIC17.18■□□□□ 0.34
Sox1P53783 Gm8396-201ENSMUST00000057361 823 ntBASIC17.18■□□□□ 0.34
Sox1P53783 9030624G23Rik-201ENSMUST00000101538 2245 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Sox1P53783 Krt87-201ENSMUST00000081945 1826 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Sox1P53783 Smim3-201ENSMUST00000042710 1984 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Sox1P53783 Proc-201ENSMUST00000171765 1566 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
Sox1P53783 Cldn11-201ENSMUST00000046174 1870 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Sox1P53783 Ntn1-201ENSMUST00000021284 5738 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
Sox1P53783 Carm1-202ENSMUST00000115394 3320 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
Sox1P53783 Matn4-202ENSMUST00000103104 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Sox1P53783 Acaa2-201ENSMUST00000041053 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Sox1P53783 Mmd-202ENSMUST00000107887 1654 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Sox1P53783 Myo1b-203ENSMUST00000114537 4618 ntTSL 5 BASIC17.17■□□□□ 0.34
Sox1P53783 Selenoh-201ENSMUST00000102646 783 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Sox1P53783 Fam107b-203ENSMUST00000115053 688 ntAPPRIS P1 TSL 3 BASIC17.17■□□□□ 0.34
Sox1P53783 Gm13616-201ENSMUST00000120600 222 ntBASIC17.17■□□□□ 0.34
Sox1P53783 Gm25745-201ENSMUST00000174945 133 ntBASIC17.17■□□□□ 0.34
Sox1P53783 Retsat-204ENSMUST00000176168 1203 ntTSL 5 BASIC17.17■□□□□ 0.34
Sox1P53783 Bnc2-214ENSMUST00000176612 3963 ntTSL 5 BASIC17.17■□□□□ 0.34
Sox1P53783 Selenoh-206ENSMUST00000189988 390 ntTSL 3 BASIC17.17■□□□□ 0.34
Sox1P53783 Gm7506-201ENSMUST00000207758 815 ntBASIC17.17■□□□□ 0.34
Sox1P53783 Lce1b-201ENSMUST00000029531 647 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Sox1P53783 Rgs10-201ENSMUST00000033133 880 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Sox1P53783 Tmem205-201ENSMUST00000046831 785 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Retrieved 100 of 76,532 protein–RNA pairs in 30.2 ms