Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 A430078I02Rik-202ENSMUST00000154066 2233 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Shmt1P50431 Nmnat3-201ENSMUST00000112935 2166 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Shmt1P50431 Apbb1-214ENSMUST00000189378 2878 ntAPPRIS ALT1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Shmt1P50431 Rbbp7-203ENSMUST00000112327 1862 ntTSL 5 BASIC17.84■□□□□ 0.45
Shmt1P50431 Ispd-201ENSMUST00000062041 2690 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Shmt1P50431 Tmx1-201ENSMUST00000021471 2795 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Shmt1P50431 Auh-201ENSMUST00000021913 1320 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Shmt1P50431 Plppr2-201ENSMUST00000046371 2626 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
Shmt1P50431 1700024G13Rik-201ENSMUST00000100723 850 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Shmt1P50431 Ndufab1-ps-201ENSMUST00000166096 468 ntBASIC17.83■□□□□ 0.44
Shmt1P50431 Gm38282-201ENSMUST00000192751 695 ntTSL 5 BASIC17.83■□□□□ 0.44
Shmt1P50431 Gm10358-201ENSMUST00000212864 1250 ntAPPRIS P1 BASIC17.83■□□□□ 0.44
Shmt1P50431 Nme3-201ENSMUST00000024978 715 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Shmt1P50431 Grcc10-201ENSMUST00000004389 863 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Shmt1P50431 2310039H08Rik-201ENSMUST00000071430 773 ntAPPRIS P1 BASIC17.83■□□□□ 0.44
Shmt1P50431 Sri-205ENSMUST00000148633 2251 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Shmt1P50431 Vgf-204ENSMUST00000190827 2834 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Shmt1P50431 Hps4-201ENSMUST00000035279 2836 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Shmt1P50431 Stxbp5-209ENSMUST00000141722 4702 ntAPPRIS P2 TSL 5 BASIC17.83■□□□□ 0.44
Shmt1P50431 Map3k10-201ENSMUST00000036453 3682 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.44
Shmt1P50431 Cbarp-201ENSMUST00000105369 3121 ntAPPRIS P2 TSL 5 BASIC17.83■□□□□ 0.44
Shmt1P50431 Hmg20b-204ENSMUST00000122993 1502 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Shmt1P50431 Ogg1-201ENSMUST00000032406 1549 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Shmt1P50431 Helt-201ENSMUST00000058636 1541 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Shmt1P50431 4833418N02Rik-202ENSMUST00000146560 1495 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Shmt1P50431 Gm11620-201ENSMUST00000118770 1845 ntBASIC17.82■□□□□ 0.44
Shmt1P50431 Smarca4-201ENSMUST00000034707 6354 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
Shmt1P50431 Hist1h2bj-201ENSMUST00000110452 463 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
Shmt1P50431 Hist1h2bp-202ENSMUST00000110473 621 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Shmt1P50431 Gm11355-201ENSMUST00000121120 306 ntBASIC17.82■□□□□ 0.44
Shmt1P50431 Zfp629-206ENSMUST00000132524 215 ntTSL 5 BASIC17.82■□□□□ 0.44
Shmt1P50431 Hist1h2bm-201ENSMUST00000224651 524 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
Shmt1P50431 Ptcra-201ENSMUST00000041012 1283 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Shmt1P50431 4933427E11Rik-201ENSMUST00000056711 1214 ntBASIC17.82■□□□□ 0.44
Shmt1P50431 Nt5c1a-201ENSMUST00000068262 1220 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Shmt1P50431 Fbxo36-201ENSMUST00000097672 901 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Shmt1P50431 Kctd9-205ENSMUST00000152243 2528 ntTSL 2 BASIC17.82■□□□□ 0.44
Shmt1P50431 4833445I07Rik-201ENSMUST00000193193 1642 ntBASIC17.82■□□□□ 0.44
Shmt1P50431 Mapkapk3-201ENSMUST00000035194 2816 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Shmt1P50431 Pid1-201ENSMUST00000168574 2664 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Shmt1P50431 Whrn-205ENSMUST00000095038 2665 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Shmt1P50431 Acvrl1-203ENSMUST00000119063 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Shmt1P50431 Gm45203-201ENSMUST00000206384 1831 ntBASIC17.82■□□□□ 0.44
Shmt1P50431 B4galt3-205ENSMUST00000126699 1758 ntTSL 5 BASIC17.81■□□□□ 0.44
Shmt1P50431 Ccdc106-204ENSMUST00000207974 2492 ntTSL 2 BASIC17.81■□□□□ 0.44
Shmt1P50431 Proca1-203ENSMUST00000108317 1359 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
Shmt1P50431 Fem1c-201ENSMUST00000036226 5726 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Shmt1P50431 Gm28793-201ENSMUST00000190845 413 ntTSL 5 BASIC17.81■□□□□ 0.44
Shmt1P50431 Gm37722-201ENSMUST00000193757 208 ntBASIC17.81■□□□□ 0.44
Shmt1P50431 Angptl8-201ENSMUST00000058777 865 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Shmt1P50431 Fbxo17-203ENSMUST00000108279 1563 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Shmt1P50431 Yars2-204ENSMUST00000159962 2805 ntTSL 2 BASIC17.81■□□□□ 0.44
Shmt1P50431 Smad1-202ENSMUST00000066091 3099 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Shmt1P50431 Pld2-203ENSMUST00000108557 3655 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Shmt1P50431 Tnrc6c-202ENSMUST00000106344 8847 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
Shmt1P50431 Stard6-201ENSMUST00000114959 1496 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Shmt1P50431 Gmcl1-201ENSMUST00000001185 2949 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Shmt1P50431 Arfip1-202ENSMUST00000107687 1714 ntTSL 5 BASIC17.81■□□□□ 0.44
Shmt1P50431 Gm16835-201ENSMUST00000140488 2809 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Shmt1P50431 Pou2f2-205ENSMUST00000108417 1937 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Shmt1P50431 Fbxo33-201ENSMUST00000043204 3688 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Shmt1P50431 Asph-204ENSMUST00000084915 2884 ntTSL 5 BASIC17.8■□□□□ 0.44
Shmt1P50431 Gm33142-201ENSMUST00000193913 867 ntBASIC17.8■□□□□ 0.44
Shmt1P50431 Snrnp35-201ENSMUST00000031349 1115 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Shmt1P50431 Gfra4-202ENSMUST00000066958 783 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Shmt1P50431 Vkorc1l1-203ENSMUST00000201855 4809 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Shmt1P50431 Uso1-204ENSMUST00000202155 3707 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Shmt1P50431 Nr1d2-201ENSMUST00000090543 4663 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Shmt1P50431 Mpped2-202ENSMUST00000111063 2848 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Shmt1P50431 Iqsec2-207ENSMUST00000168786 5993 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Shmt1P50431 Gm15635-204ENSMUST00000208024 2539 ntBASIC17.79■□□□□ 0.44
Shmt1P50431 Lrp3-201ENSMUST00000118444 3877 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
Shmt1P50431 Rnf44-204ENSMUST00000125871 4292 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Shmt1P50431 Haus4-201ENSMUST00000022784 1587 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Shmt1P50431 Pcolce-202ENSMUST00000054564 1585 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
Shmt1P50431 Usb1-201ENSMUST00000034245 1758 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Shmt1P50431 BC034090-204ENSMUST00000186156 4873 ntAPPRIS P5 TSL 5 BASIC17.79■□□□□ 0.44
Shmt1P50431 Gm19569-202ENSMUST00000184658 1305 ntTSL 2 BASIC17.79■□□□□ 0.44
Shmt1P50431 Casp3-201ENSMUST00000093517 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Shmt1P50431 Arrb1-210ENSMUST00000179755 7135 ntTSL 5 BASIC17.79■□□□□ 0.44
Shmt1P50431 Rbpms-201ENSMUST00000033994 2375 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Shmt1P50431 Arrb1-202ENSMUST00000098266 7132 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Shmt1P50431 Mrpl49-201ENSMUST00000007482 1722 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Shmt1P50431 Abr-202ENSMUST00000072740 5394 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
Shmt1P50431 Fst-201ENSMUST00000022287 2556 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Shmt1P50431 AC122335.2-201ENSMUST00000213901 6181 ntBASIC17.79■□□□□ 0.44
Shmt1P50431 Fndc11-202ENSMUST00000108835 1154 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
Shmt1P50431 Gm8797-201ENSMUST00000192045 490 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
Shmt1P50431 Gm5587-201ENSMUST00000206270 674 ntBASIC17.79■□□□□ 0.44
Shmt1P50431 Ero1l-201ENSMUST00000022378 4418 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Shmt1P50431 D730003I15Rik-202ENSMUST00000194375 1667 ntBASIC17.79■□□□□ 0.44
Shmt1P50431 Nfix-204ENSMUST00000109764 5476 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Shmt1P50431 AU022751-202ENSMUST00000117544 2201 ntAPPRIS P4 BASIC17.79■□□□□ 0.44
Shmt1P50431 Cops6-201ENSMUST00000019638 1787 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Shmt1P50431 Cap1-202ENSMUST00000106255 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Shmt1P50431 Dusp9-201ENSMUST00000019701 2722 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Shmt1P50431 Napa-201ENSMUST00000006181 2517 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Shmt1P50431 Bud23-202ENSMUST00000085984 1516 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Shmt1P50431 Icmt-201ENSMUST00000048892 4919 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Shmt1P50431 Kank3-201ENSMUST00000048560 2641 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Retrieved 100 of 76,532 protein–RNA pairs in 33.6 ms