Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Plppr2-201ENSMUST00000046371 2626 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Traf1P39428 Trap1-201ENSMUST00000006137 2320 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Traf1P39428 Dnajc2-201ENSMUST00000030771 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Traf1P39428 2810408A11Rik-204ENSMUST00000108621 1455 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
Traf1P39428 Ddx41-204ENSMUST00000224765 2199 ntBASIC19.49■□□□□ 0.71
Traf1P39428 Bmt2-201ENSMUST00000045235 4143 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
Traf1P39428 Proser2-201ENSMUST00000054254 2061 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Traf1P39428 Gm11950-201ENSMUST00000121615 838 ntBASIC19.49■□□□□ 0.71
Traf1P39428 Srgn-205ENSMUST00000162161 694 ntAPPRIS P1 TSL 3 BASIC19.49■□□□□ 0.71
Traf1P39428 Gm37722-201ENSMUST00000193757 208 ntBASIC19.49■□□□□ 0.71
Traf1P39428 Zkscan14-201ENSMUST00000031632 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Traf1P39428 4933427J07Rik-201ENSMUST00000156275 1533 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
Traf1P39428 Zbtb32-202ENSMUST00000108151 1775 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
Traf1P39428 Mmd-202ENSMUST00000107887 1654 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
Traf1P39428 Gas2-201ENSMUST00000051912 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Traf1P39428 Cdca3-201ENSMUST00000024270 1976 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Traf1P39428 Fam69a-201ENSMUST00000031198 2721 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Traf1P39428 Bpifb4-203ENSMUST00000109759 2115 ntAPPRIS P2 TSL 5 BASIC19.48■□□□□ 0.71
Traf1P39428 Dlgap1-206ENSMUST00000133717 2355 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
Traf1P39428 4833445I07Rik-201ENSMUST00000193193 1642 ntBASIC19.48■□□□□ 0.71
Traf1P39428 Adrb2-201ENSMUST00000053640 2143 ntAPPRIS P1 BASIC19.48■□□□□ 0.71
Traf1P39428 Acadvl-201ENSMUST00000018718 2020 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
Traf1P39428 Il9r-204ENSMUST00000142396 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
Traf1P39428 Gm27000-201ENSMUST00000182943 842 ntBASIC19.48■□□□□ 0.71
Traf1P39428 Shc3-203ENSMUST00000223543 1241 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Traf1P39428 Pdx1-201ENSMUST00000085591 2158 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Traf1P39428 Mta1-201ENSMUST00000009099 2826 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
Traf1P39428 Puf60-201ENSMUST00000002599 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
Traf1P39428 Fam20c-201ENSMUST00000026972 3582 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Traf1P39428 Spg21-202ENSMUST00000213957 1302 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Traf1P39428 Atp8b2-201ENSMUST00000069805 5559 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
Traf1P39428 Nfib-204ENSMUST00000107246 3075 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Traf1P39428 Cxcl14-202ENSMUST00000224801 1467 ntBASIC19.48■□□□□ 0.71
Traf1P39428 Slk-201ENSMUST00000026043 7278 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
Traf1P39428 Pcf11-201ENSMUST00000119954 5995 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Traf1P39428 Zhx1-202ENSMUST00000110168 5212 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
Traf1P39428 Med9-201ENSMUST00000081980 1920 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Traf1P39428 Rab11b-203ENSMUST00000173860 1544 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Traf1P39428 Gm43338-201ENSMUST00000198617 2223 ntBASIC19.47■□□□□ 0.71
Traf1P39428 Pdap1-201ENSMUST00000031627 2353 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Traf1P39428 9930012K11Rik-205ENSMUST00000153871 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
Traf1P39428 Sap18-202ENSMUST00000111268 662 ntTSL 2 BASIC19.47■□□□□ 0.71
Traf1P39428 Aicda-202ENSMUST00000160685 1292 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Traf1P39428 Acaa1a-203ENSMUST00000175743 1219 ntTSL 5 BASIC19.47■□□□□ 0.71
Traf1P39428 Acaa1a-207ENSMUST00000176397 996 ntTSL 5 BASIC19.47■□□□□ 0.71
Traf1P39428 Gm10358-201ENSMUST00000212864 1250 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
Traf1P39428 Gm26709-203ENSMUST00000223260 715 ntTSL 5 BASIC19.47■□□□□ 0.71
Traf1P39428 AC130713.1-201ENSMUST00000228853 1096 ntBASIC19.47■□□□□ 0.71
Traf1P39428 Med29-201ENSMUST00000003536 1281 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Traf1P39428 Rln3-201ENSMUST00000061923 634 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Traf1P39428 Dusp9-201ENSMUST00000019701 2722 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Traf1P39428 Ccdc17-201ENSMUST00000051869 2003 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Traf1P39428 Fxr1-201ENSMUST00000001620 2459 ntTSL 5 BASIC19.47■□□□□ 0.71
Traf1P39428 Gm19569-202ENSMUST00000184658 1305 ntTSL 2 BASIC19.47■□□□□ 0.71
Traf1P39428 4933402J07Rik-201ENSMUST00000093342 1304 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Traf1P39428 AC125311.2-201ENSMUST00000227477 1940 ntBASIC19.47■□□□□ 0.71
Traf1P39428 Zfp92-202ENSMUST00000086470 2050 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Traf1P39428 Zbtb24-201ENSMUST00000080771 2844 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Traf1P39428 Lin9-203ENSMUST00000192561 3160 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Traf1P39428 St7l-202ENSMUST00000106769 2428 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Traf1P39428 Gm16863-201ENSMUST00000181476 2431 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Traf1P39428 Bmp8a-201ENSMUST00000040496 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Traf1P39428 Frmd5-203ENSMUST00000121219 2262 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Traf1P39428 Mon2-202ENSMUST00000073792 9301 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
Traf1P39428 Cep68-204ENSMUST00000162811 2788 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Traf1P39428 Gm26676-201ENSMUST00000181877 2226 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Traf1P39428 Gm11860-201ENSMUST00000122346 1010 ntBASIC19.46■□□□□ 0.71
Traf1P39428 Ramp2-204ENSMUST00000129680 1178 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Traf1P39428 Gm6623-201ENSMUST00000173570 544 ntBASIC19.46■□□□□ 0.71
Traf1P39428 Ank2-226ENSMUST00000189368 339 ntBASIC19.46■□□□□ 0.71
Traf1P39428 Skp1a-203ENSMUST00000109072 1754 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
Traf1P39428 Tm2d3-202ENSMUST00000065574 1478 ntAPPRIS P4 TSL 1 (best) BASIC19.46■□□□□ 0.71
Traf1P39428 Itsn1-205ENSMUST00000113996 5147 ntTSL 5 BASIC19.46■□□□□ 0.71
Traf1P39428 Gm7292-201ENSMUST00000194706 2527 ntBASIC19.46■□□□□ 0.71
Traf1P39428 Tmed4-201ENSMUST00000004508 2003 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Traf1P39428 Cenpw-201ENSMUST00000099985 1532 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Traf1P39428 Rprd1b-207ENSMUST00000152452 1910 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Traf1P39428 Trip10-205ENSMUST00000224885 2136 ntAPPRIS ALT2 BASIC19.45■□□□□ 0.7
Traf1P39428 Hmbox1-203ENSMUST00000175744 1771 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Traf1P39428 Snrpd2-201ENSMUST00000049294 1420 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Traf1P39428 Axin1-203ENSMUST00000163421 2890 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
Traf1P39428 Fam46a-202ENSMUST00000187711 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
Traf1P39428 Gm9103-201ENSMUST00000119371 405 ntBASIC19.45■□□□□ 0.7
Traf1P39428 Gm15952-201ENSMUST00000122858 490 ntTSL 3 BASIC19.45■□□□□ 0.7
Traf1P39428 Pyy-201ENSMUST00000017455 555 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
Traf1P39428 Gm45328-201ENSMUST00000210942 917 ntBASIC19.45■□□□□ 0.7
Traf1P39428 Ptcra-201ENSMUST00000041012 1283 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Traf1P39428 Mcl1-201ENSMUST00000037947 3418 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
Traf1P39428 Fbxo17-203ENSMUST00000108279 1563 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Traf1P39428 Map3k10-201ENSMUST00000036453 3682 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Traf1P39428 Nadk2-202ENSMUST00000100789 3578 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
Traf1P39428 Csnk1a1-206ENSMUST00000165721 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Traf1P39428 Bpifa3-202ENSMUST00000109746 1102 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Traf1P39428 Taco1os-201ENSMUST00000140736 644 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Traf1P39428 Mgst3-201ENSMUST00000028005 1097 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Traf1P39428 Insl3-201ENSMUST00000034261 623 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Traf1P39428 Gpd1-203ENSMUST00000162194 1515 ntTSL 5 BASIC19.44■□□□□ 0.7
Traf1P39428 Rdx-202ENSMUST00000061352 1502 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Traf1P39428 Bud23-202ENSMUST00000085984 1516 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Traf1P39428 Tmf1-201ENSMUST00000095664 5732 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Retrieved 100 of 76,532 protein–RNA pairs in 21.2 ms