Protein–RNA interactions for Protein: P35123

Usp4, Ubiquitin carboxyl-terminal hydrolase 4, mousemouse

Predictions only

Length 962 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp4P35123 Smim10l1-204ENSMUST00000191462 574 ntTSL 3 BASIC17.67■□□□□ 0.42
Usp4P35123 Lrriq3-201ENSMUST00000029833 2652 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Usp4P35123 Cacna1c-216ENSMUST00000188522 7338 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
Usp4P35123 Pacsin3-201ENSMUST00000028694 1862 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Usp4P35123 Klhdc8b-201ENSMUST00000035232 1897 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Usp4P35123 Zpr1-206ENSMUST00000156440 2984 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Usp4P35123 Fosl1-201ENSMUST00000025850 1707 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Usp4P35123 Zfp219-212ENSMUST00000228580 2812 ntAPPRIS ALT2 BASIC17.67■□□□□ 0.42
Usp4P35123 Lrg1-201ENSMUST00000041357 1351 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Usp4P35123 Iqsec2-202ENSMUST00000112604 5967 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Usp4P35123 Tfeb-204ENSMUST00000113288 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Usp4P35123 Krt83-201ENSMUST00000023718 1756 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Usp4P35123 Dars-201ENSMUST00000027602 2175 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Usp4P35123 Trmt2a-203ENSMUST00000115640 2367 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Usp4P35123 Phtf1-202ENSMUST00000063717 3327 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Usp4P35123 9530018F02Rik-201ENSMUST00000219513 2599 ntBASIC17.66■□□□□ 0.42
Usp4P35123 Cldn4-201ENSMUST00000051401 1816 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
Usp4P35123 Abcb10-201ENSMUST00000075578 4306 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Usp4P35123 Casd1-201ENSMUST00000015333 3961 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Usp4P35123 2810410L24Rik-202ENSMUST00000155681 2615 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Usp4P35123 Crct1-202ENSMUST00000107301 460 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
Usp4P35123 Gm13158-201ENSMUST00000122007 736 ntBASIC17.66■□□□□ 0.42
Usp4P35123 Gm7977-201ENSMUST00000193787 748 ntBASIC17.66■□□□□ 0.42
Usp4P35123 Gm45709-201ENSMUST00000213052 1075 ntTSL 5 BASIC17.66■□□□□ 0.42
Usp4P35123 Nrn1l-201ENSMUST00000060167 617 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
Usp4P35123 Gm8909-202ENSMUST00000097335 1182 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
Usp4P35123 Man2a2-201ENSMUST00000098346 6554 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Usp4P35123 Flg-201ENSMUST00000050758 1488 ntBASIC17.66■□□□□ 0.42
Usp4P35123 Coro1a-201ENSMUST00000032949 1660 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Usp4P35123 Rasgrp1-201ENSMUST00000102534 5229 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
Usp4P35123 Akt2-214ENSMUST00000167435 2865 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Usp4P35123 Ttc13-202ENSMUST00000117624 3096 ntTSL 5 BASIC17.66■□□□□ 0.42
Usp4P35123 Heyl-201ENSMUST00000040821 4537 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Usp4P35123 Trim37-201ENSMUST00000041282 5632 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Usp4P35123 Scin-201ENSMUST00000002640 2995 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Usp4P35123 Gch1-201ENSMUST00000089959 2775 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Usp4P35123 Mapk7-201ENSMUST00000079080 3019 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Usp4P35123 Mst1-204ENSMUST00000162886 2209 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
Usp4P35123 Dnah9-202ENSMUST00000108691 2671 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Usp4P35123 Hace1-201ENSMUST00000037044 3785 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Usp4P35123 Cerkl-205ENSMUST00000143974 1623 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Usp4P35123 Capn10-201ENSMUST00000027488 2902 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Usp4P35123 Sprn-201ENSMUST00000059241 3374 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Usp4P35123 Wdr90-205ENSMUST00000176923 5666 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
Usp4P35123 Synpo-201ENSMUST00000097566 5060 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
Usp4P35123 Ak3-201ENSMUST00000025696 2809 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Usp4P35123 Haspin-201ENSMUST00000052140 2810 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
Usp4P35123 Ogfr-201ENSMUST00000029087 2449 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Usp4P35123 Comp-201ENSMUST00000003659 2416 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Usp4P35123 Gm3331-201ENSMUST00000183423 1017 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Usp4P35123 Cmc1-202ENSMUST00000215799 531 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Usp4P35123 Neurl1b-201ENSMUST00000053020 6195 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Usp4P35123 Gna12-201ENSMUST00000000153 3416 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Usp4P35123 G3bp2-204ENSMUST00000169094 2716 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
Usp4P35123 Cxcl12-202ENSMUST00000112866 1878 ntAPPRIS ALT1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Usp4P35123 Rab7-203ENSMUST00000113597 1859 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Usp4P35123 Gm45736-201ENSMUST00000210592 1352 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
Usp4P35123 Naxd-201ENSMUST00000033901 1359 ntTSL 2 BASIC17.65■□□□□ 0.42
Usp4P35123 Cmtm4-201ENSMUST00000179802 7734 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Usp4P35123 Glcci1-201ENSMUST00000064285 6200 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
Usp4P35123 Zkscan14-201ENSMUST00000031632 1967 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Usp4P35123 Bcor-206ENSMUST00000124033 6785 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Usp4P35123 Tbc1d9b-202ENSMUST00000101270 5213 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
Usp4P35123 Dnal4-201ENSMUST00000023055 1469 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Usp4P35123 Ssu72-201ENSMUST00000030905 1472 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Usp4P35123 Hmces-201ENSMUST00000032141 1464 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Usp4P35123 Elk4-202ENSMUST00000086556 4433 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Usp4P35123 Atp1a1-201ENSMUST00000036493 3679 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Usp4P35123 Uhmk1-202ENSMUST00000123399 7775 ntTSL 5 BASIC17.64■□□□□ 0.41
Usp4P35123 Zdhhc1-203ENSMUST00000212303 2056 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Usp4P35123 Gm715-201ENSMUST00000117865 831 ntBASIC17.64■□□□□ 0.41
Usp4P35123 Gm11643-201ENSMUST00000119578 864 ntBASIC17.64■□□□□ 0.41
Usp4P35123 Pgap3-205ENSMUST00000128897 1264 ntTSL 5 BASIC17.64■□□□□ 0.41
Usp4P35123 6530437J22Rik-201ENSMUST00000207515 773 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Usp4P35123 Plpp1-202ENSMUST00000070951 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Usp4P35123 Ivns1abp-203ENSMUST00000111887 2783 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Usp4P35123 Tlk2-204ENSMUST00000106941 3699 ntAPPRIS ALT1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Usp4P35123 Tmem214-201ENSMUST00000114716 2220 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
Usp4P35123 Apoa5-202ENSMUST00000121598 2515 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Usp4P35123 Nploc4-201ENSMUST00000044271 4121 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Usp4P35123 Tub-201ENSMUST00000033341 5997 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Usp4P35123 Sharpin-201ENSMUST00000023211 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Usp4P35123 Mff-212ENSMUST00000162003 2087 ntTSL 5 BASIC17.63■□□□□ 0.41
Usp4P35123 Nfs1-201ENSMUST00000029147 2051 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Usp4P35123 Rhobtb2-201ENSMUST00000022665 5322 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Usp4P35123 Atoh1-201ENSMUST00000101351 2121 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
Usp4P35123 Ano8-204ENSMUST00000213382 3785 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
Usp4P35123 Zfp648-201ENSMUST00000086195 1892 ntAPPRIS P1 TSL 3 BASIC17.63■□□□□ 0.41
Usp4P35123 Atp6v0a1-203ENSMUST00000103110 2716 ntTSL 5 BASIC17.63■□□□□ 0.41
Usp4P35123 Zfp467-208ENSMUST00000114564 626 ntTSL 2 BASIC17.63■□□□□ 0.41
Usp4P35123 Moap1-202ENSMUST00000178384 1284 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
Usp4P35123 Gm19426-201ENSMUST00000181711 726 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
Usp4P35123 Polr1c-201ENSMUST00000087026 1314 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Usp4P35123 Prps1l3-201ENSMUST00000139049 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Usp4P35123 Yipf4-201ENSMUST00000024873 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Usp4P35123 Mettl27-204ENSMUST00000111219 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Usp4P35123 Aldh2-202ENSMUST00000129753 1799 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Usp4P35123 Scrt1-202ENSMUST00000164703 3478 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
Usp4P35123 Gal3st1-201ENSMUST00000063004 1879 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Usp4P35123 Mid1-206ENSMUST00000112107 3194 ntTSL 5 BASIC17.63■□□□□ 0.41
Retrieved 100 of 76,532 protein–RNA pairs in 17.9 ms