Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Tlk1-201ENSMUST00000038584 4280 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Chmp6P0C0A3 Syt8-202ENSMUST00000105976 1289 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Chmp6P0C0A3 Gm20878-202ENSMUST00000108028 339 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
Chmp6P0C0A3 Syt8-205ENSMUST00000122393 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Chmp6P0C0A3 Tpsg1-202ENSMUST00000160377 1040 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Chmp6P0C0A3 Gm26643-201ENSMUST00000180854 1274 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Chmp6P0C0A3 Stk11-210ENSMUST00000213772 1239 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Chmp6P0C0A3 Arl2-201ENSMUST00000025893 1144 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Chmp6P0C0A3 Tfdp2-206ENSMUST00000185644 2646 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
Chmp6P0C0A3 Tle2-213ENSMUST00000146358 2749 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
Chmp6P0C0A3 Ttl-201ENSMUST00000035812 4567 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Chmp6P0C0A3 Pitx2-207ENSMUST00000174661 1942 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
Chmp6P0C0A3 Apba3-201ENSMUST00000057798 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Chmp6P0C0A3 Rrbp1-201ENSMUST00000016072 5177 ntAPPRIS P4 TSL 5 BASIC18.36■□□□□ 0.53
Chmp6P0C0A3 Parg-208ENSMUST00000170840 2894 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
Chmp6P0C0A3 Otud5-202ENSMUST00000115665 3821 ntTSL 5 BASIC18.36■□□□□ 0.53
Chmp6P0C0A3 Hist1h4a-201ENSMUST00000102964 539 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
Chmp6P0C0A3 Tmc6-202ENSMUST00000103025 1279 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Chmp6P0C0A3 Mpst-203ENSMUST00000169133 1309 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
Chmp6P0C0A3 4933428P19Rik-201ENSMUST00000199616 1376 ntBASIC18.36■□□□□ 0.53
Chmp6P0C0A3 Nudt8-202ENSMUST00000025802 787 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Chmp6P0C0A3 Ift74-201ENSMUST00000030311 2139 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
Chmp6P0C0A3 Cask-201ENSMUST00000033321 4057 ntTSL 5 BASIC18.36■□□□□ 0.53
Chmp6P0C0A3 H2afz-201ENSMUST00000041045 1069 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Chmp6P0C0A3 Epn1-201ENSMUST00000045277 2334 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Chmp6P0C0A3 Gjb3-201ENSMUST00000046532 1880 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Chmp6P0C0A3 Rptor-201ENSMUST00000026671 6594 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Chmp6P0C0A3 Plcl1-201ENSMUST00000042986 6580 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Chmp6P0C0A3 Strn-203ENSMUST00000145910 8629 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Chmp6P0C0A3 Yars2-204ENSMUST00000159962 2805 ntTSL 2 BASIC18.36■□□□□ 0.53
Chmp6P0C0A3 Nrl-202ENSMUST00000111404 2422 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Chmp6P0C0A3 Shroom4-202ENSMUST00000103005 4839 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Chmp6P0C0A3 Myo9b-206ENSMUST00000212935 6316 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
Chmp6P0C0A3 Camk2d-226ENSMUST00000199300 5524 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Chmp6P0C0A3 Pld2-203ENSMUST00000108557 3655 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Chmp6P0C0A3 Gbx1-201ENSMUST00000088311 3475 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Chmp6P0C0A3 Ptpro-203ENSMUST00000167679 5096 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Chmp6P0C0A3 Faap20-201ENSMUST00000097747 1479 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Chmp6P0C0A3 Dcaf12l2-201ENSMUST00000115057 2885 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
Chmp6P0C0A3 Fndc11-201ENSMUST00000050026 1387 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Chmp6P0C0A3 Fam166b-201ENSMUST00000052829 1349 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Chmp6P0C0A3 Gm43353-201ENSMUST00000199224 1295 ntBASIC18.35■□□□□ 0.53
Chmp6P0C0A3 Fkbp3-201ENSMUST00000021332 1022 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Chmp6P0C0A3 Senp3-202ENSMUST00000066760 2219 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Chmp6P0C0A3 Eml1-203ENSMUST00000109860 4160 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Chmp6P0C0A3 Mon1a-201ENSMUST00000035202 2042 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Chmp6P0C0A3 Cnpy1-202ENSMUST00000118882 1984 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Chmp6P0C0A3 Rprd1b-207ENSMUST00000152452 1910 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Chmp6P0C0A3 Itgb1bp1-201ENSMUST00000076260 1874 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Chmp6P0C0A3 Snrnp48-201ENSMUST00000091641 1785 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Chmp6P0C0A3 Kif5b-201ENSMUST00000025083 6032 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Chmp6P0C0A3 Hoxb2-201ENSMUST00000100523 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Chmp6P0C0A3 Slc25a3-201ENSMUST00000076694 1612 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Chmp6P0C0A3 Bmp8a-201ENSMUST00000040496 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Chmp6P0C0A3 1700096K18Rik-201ENSMUST00000188465 1454 ntBASIC18.34■□□□□ 0.53
Chmp6P0C0A3 Cyp4f13-204ENSMUST00000139353 1389 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Chmp6P0C0A3 Ints8-201ENSMUST00000044616 3433 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Chmp6P0C0A3 Fez2-202ENSMUST00000112487 2020 ntAPPRIS ALT1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Chmp6P0C0A3 Iqsec1-202ENSMUST00000101153 8036 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
Chmp6P0C0A3 4833413E03Rik-201ENSMUST00000013706 1091 ntTSL 5 BASIC18.34■□□□□ 0.53
Chmp6P0C0A3 Gm26879-201ENSMUST00000181127 1176 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Chmp6P0C0A3 Gm7791-201ENSMUST00000219066 539 ntBASIC18.34■□□□□ 0.53
Chmp6P0C0A3 Dctn3-201ENSMUST00000030158 973 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Chmp6P0C0A3 Lsm10-201ENSMUST00000055575 943 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Chmp6P0C0A3 Rprml-201ENSMUST00000057870 1010 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
Chmp6P0C0A3 Stk32c-202ENSMUST00000165870 1883 ntTSL 5 BASIC18.34■□□□□ 0.53
Chmp6P0C0A3 Gnb1-202ENSMUST00000105616 3088 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Chmp6P0C0A3 Tia1-203ENSMUST00000095754 1789 ntAPPRIS ALT1 TSL 5 BASIC18.34■□□□□ 0.53
Chmp6P0C0A3 Ccdc105-201ENSMUST00000105383 1714 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Chmp6P0C0A3 A930029G22Rik-201ENSMUST00000181032 1710 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Chmp6P0C0A3 Dennd4b-202ENSMUST00000129564 5647 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
Chmp6P0C0A3 Arntl-204ENSMUST00000210238 2976 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.53
Chmp6P0C0A3 Ttc39a-201ENSMUST00000064129 2356 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.53
Chmp6P0C0A3 Sart3-201ENSMUST00000019118 4447 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Chmp6P0C0A3 Gprc5c-203ENSMUST00000122967 1709 ntTSL 5 BASIC18.33■□□□□ 0.52
Chmp6P0C0A3 Gapdh-202ENSMUST00000117757 1273 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Chmp6P0C0A3 H2-D1-202ENSMUST00000172785 2102 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Chmp6P0C0A3 Gm26938-201ENSMUST00000182839 744 ntAPPRIS P1 TSL 3 BASIC18.33■□□□□ 0.52
Chmp6P0C0A3 Dvl2-201ENSMUST00000019362 2968 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Chmp6P0C0A3 Gm9731-201ENSMUST00000209480 747 ntBASIC18.33■□□□□ 0.52
Chmp6P0C0A3 AC159205.6-201ENSMUST00000224935 887 ntBASIC18.33■□□□□ 0.52
Chmp6P0C0A3 Sec11c-201ENSMUST00000025394 807 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Chmp6P0C0A3 Zfpl1-201ENSMUST00000025707 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Chmp6P0C0A3 Ltbp1-201ENSMUST00000001927 6671 ntTSL 5 BASIC18.33■□□□□ 0.52
Chmp6P0C0A3 Gm16863-201ENSMUST00000181476 2431 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Chmp6P0C0A3 Mal-202ENSMUST00000028854 2778 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Chmp6P0C0A3 Nfe2l1-202ENSMUST00000107657 3869 ntAPPRIS P3 TSL 5 BASIC18.33■□□□□ 0.52
Chmp6P0C0A3 Acbd3-201ENSMUST00000027780 3471 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Chmp6P0C0A3 2810425M01Rik-201ENSMUST00000180790 1850 ntTSL 5 BASIC18.33■□□□□ 0.52
Chmp6P0C0A3 Gabbr1-202ENSMUST00000172789 1460 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Chmp6P0C0A3 Cxcl14-201ENSMUST00000021970 1827 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Chmp6P0C0A3 Snx11-202ENSMUST00000107661 2197 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Chmp6P0C0A3 Zar1-201ENSMUST00000073528 1429 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Chmp6P0C0A3 Lrriq4-203ENSMUST00000172350 1797 ntAPPRIS P3 TSL 5 BASIC18.32■□□□□ 0.52
Chmp6P0C0A3 Gpr20-201ENSMUST00000064166 2144 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Chmp6P0C0A3 Nfkbib-201ENSMUST00000032815 2061 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Chmp6P0C0A3 Tmtc4-209ENSMUST00000148661 2719 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Chmp6P0C0A3 Glmn-201ENSMUST00000078021 2015 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Chmp6P0C0A3 Pacsin1-203ENSMUST00000114872 1647 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Chmp6P0C0A3 Gm13559-201ENSMUST00000120476 863 ntBASIC18.32■□□□□ 0.52
Retrieved 100 of 76,532 protein–RNA pairs in 22.6 ms