Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Fam135a-201ENSMUST00000027337 5536 ntAPPRIS P2 TSL 5 BASIC13.1□□□□□ -0.31
Hoxd3P09027 Plppr4-201ENSMUST00000061071 5696 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Hoxd3P09027 Lce1j-201ENSMUST00000107304 420 ntAPPRIS P1 BASIC13.1□□□□□ -0.31
Hoxd3P09027 Echdc2-203ENSMUST00000116307 893 ntTSL 5 BASIC13.1□□□□□ -0.31
Hoxd3P09027 Rab3d-202ENSMUST00000119055 694 ntTSL 3 BASIC13.1□□□□□ -0.31
Hoxd3P09027 Gm26039-201ENSMUST00000158152 144 ntBASIC13.1□□□□□ -0.31
Hoxd3P09027 Gm26827-201ENSMUST00000181911 148 ntTSL 5 BASIC13.1□□□□□ -0.31
Hoxd3P09027 Pdrg1-201ENSMUST00000028972 1273 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Hoxd3P09027 Irak1bp1-201ENSMUST00000034783 1159 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Hoxd3P09027 Cox17-201ENSMUST00000050273 444 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Hoxd3P09027 Pdcd2-201ENSMUST00000054450 1120 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Hoxd3P09027 4930465K10Rik-201ENSMUST00000056675 1238 ntBASIC13.1□□□□□ -0.31
Hoxd3P09027 Cdkn2c-201ENSMUST00000063531 1106 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Hoxd3P09027 Arhgef7-205ENSMUST00000110909 4926 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Hoxd3P09027 Ube2d1-201ENSMUST00000020085 1431 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Hoxd3P09027 Synm-205ENSMUST00000208815 2697 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
Hoxd3P09027 Fam98a-201ENSMUST00000112507 2817 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Hoxd3P09027 Stox1-202ENSMUST00000133371 3510 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Hoxd3P09027 Mapre3-201ENSMUST00000031058 2021 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Hoxd3P09027 Zdhhc6-207ENSMUST00000224897 2168 ntAPPRIS P1 BASIC13.1□□□□□ -0.31
Hoxd3P09027 Osbpl1a-207ENSMUST00000121808 3030 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Hoxd3P09027 Gm26697-201ENSMUST00000180898 1760 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Hoxd3P09027 Card10-202ENSMUST00000164826 4726 ntAPPRIS P2 TSL 1 (best) BASIC13.09□□□□□ -0.31
Hoxd3P09027 Tmem151b-201ENSMUST00000180252 4851 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Hoxd3P09027 Col17a1-202ENSMUST00000086923 5477 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
Hoxd3P09027 Zkscan14-201ENSMUST00000031632 1967 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Hoxd3P09027 Kctd12-202ENSMUST00000184744 6057 ntAPPRIS P1 BASIC13.09□□□□□ -0.31
Hoxd3P09027 Ccnd3-202ENSMUST00000171031 2113 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
Hoxd3P09027 Clasp2-204ENSMUST00000213663 2727 ntTSL 5 BASIC13.09□□□□□ -0.31
Hoxd3P09027 Ecel1-204ENSMUST00000161002 3033 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Hoxd3P09027 Gprin1-202ENSMUST00000135343 4248 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Hoxd3P09027 Dleu2-208ENSMUST00000182768 1442 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Hoxd3P09027 Gm38282-201ENSMUST00000192751 695 ntTSL 5 BASIC13.09□□□□□ -0.31
Hoxd3P09027 Gm21362-201ENSMUST00000194272 928 ntBASIC13.09□□□□□ -0.31
Hoxd3P09027 Stx3-208ENSMUST00000211641 1018 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Hoxd3P09027 Nme3-201ENSMUST00000024978 715 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Hoxd3P09027 Cltb-201ENSMUST00000049575 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
Hoxd3P09027 Nudt1-201ENSMUST00000050205 954 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Hoxd3P09027 Gm7367-201ENSMUST00000057611 492 ntBASIC13.09□□□□□ -0.31
Hoxd3P09027 Mtnr1b-201ENSMUST00000057920 1095 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Hoxd3P09027 Tsr3-201ENSMUST00000063574 1192 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Hoxd3P09027 Nudt1-202ENSMUST00000071881 952 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Hoxd3P09027 Dlx3-201ENSMUST00000092768 2607 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Hoxd3P09027 Map4k5-201ENSMUST00000049239 4452 ntAPPRIS ALT1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Hoxd3P09027 Rprd1b-207ENSMUST00000152452 1910 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Hoxd3P09027 Bhlhe41-201ENSMUST00000032386 6133 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Hoxd3P09027 AC154855.1-201ENSMUST00000227353 1458 ntBASIC13.09□□□□□ -0.31
Hoxd3P09027 9930021J03Rik-204ENSMUST00000177155 6632 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.31
Hoxd3P09027 Mta1-201ENSMUST00000009099 2826 ntAPPRIS ALT2 TSL 5 BASIC13.08□□□□□ -0.31
Hoxd3P09027 Alcam-201ENSMUST00000023312 6036 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Hoxd3P09027 Rrbp1-202ENSMUST00000037875 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
Hoxd3P09027 Ltbp4-202ENSMUST00000108369 5377 ntAPPRIS ALT2 TSL 5 BASIC13.08□□□□□ -0.32
Hoxd3P09027 Magi1-202ENSMUST00000089317 7209 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.32
Hoxd3P09027 Fbxo42-201ENSMUST00000030757 5934 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Hoxd3P09027 A730089K16Rik-201ENSMUST00000194526 2427 ntBASIC13.08□□□□□ -0.32
Hoxd3P09027 Caln1-203ENSMUST00000111288 9327 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Hoxd3P09027 Gcat-202ENSMUST00000171999 1763 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Hoxd3P09027 Agps-201ENSMUST00000047232 7359 ntAPPRIS P2 TSL 1 (best) BASIC13.08□□□□□ -0.32
Hoxd3P09027 Hist1h2bj-201ENSMUST00000110452 463 ntAPPRIS P1 BASIC13.08□□□□□ -0.32
Hoxd3P09027 Hist1h2bp-202ENSMUST00000110473 621 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Hoxd3P09027 Tm4sf19-201ENSMUST00000115149 1257 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Hoxd3P09027 Gm11355-201ENSMUST00000121120 306 ntBASIC13.08□□□□□ -0.32
Hoxd3P09027 Gm9013-201ENSMUST00000132939 882 ntBASIC13.08□□□□□ -0.32
Hoxd3P09027 Rapgef3os1-201ENSMUST00000149373 483 ntTSL 3 BASIC13.08□□□□□ -0.32
Hoxd3P09027 Ppdpf-201ENSMUST00000016488 1160 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Hoxd3P09027 Gm3272-201ENSMUST00000181181 1229 ntBASIC13.08□□□□□ -0.32
Hoxd3P09027 Gm28793-201ENSMUST00000190845 413 ntTSL 5 BASIC13.08□□□□□ -0.32
Hoxd3P09027 Gm33142-201ENSMUST00000193913 867 ntBASIC13.08□□□□□ -0.32
Hoxd3P09027 Hist1h2bm-201ENSMUST00000224651 524 ntAPPRIS P1 BASIC13.08□□□□□ -0.32
Hoxd3P09027 Birc5-201ENSMUST00000081387 947 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Hoxd3P09027 Gm10566-201ENSMUST00000086739 996 ntBASIC13.08□□□□□ -0.32
Hoxd3P09027 Gm37194-201ENSMUST00000193092 3031 ntBASIC13.08□□□□□ -0.32
Hoxd3P09027 Sox4-201ENSMUST00000067230 4795 ntAPPRIS P1 BASIC13.08□□□□□ -0.32
Hoxd3P09027 Dnajb14-201ENSMUST00000090178 9477 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Hoxd3P09027 Mcl1-201ENSMUST00000037947 3418 ntAPPRIS P2 TSL 1 (best) BASIC13.08□□□□□ -0.32
Hoxd3P09027 Arhgef19-201ENSMUST00000006618 3414 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Hoxd3P09027 Mmd-202ENSMUST00000107887 1654 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Hoxd3P09027 Itgb1bp1-201ENSMUST00000076260 1874 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Hoxd3P09027 Acot7-206ENSMUST00000167926 1505 ntAPPRIS P4 TSL 1 (best) BASIC13.08□□□□□ -0.32
Hoxd3P09027 Atad3a-201ENSMUST00000030903 2413 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Hoxd3P09027 Vps53-202ENSMUST00000094015 2645 ntTSL 5 BASIC13.08□□□□□ -0.32
Hoxd3P09027 Ptgis-202ENSMUST00000088041 1711 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Hoxd3P09027 4930503L19Rik-201ENSMUST00000067556 2291 ntAPPRIS P2 TSL 1 (best) BASIC13.08□□□□□ -0.32
Hoxd3P09027 March3-202ENSMUST00000102912 1754 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Hoxd3P09027 Bcor-202ENSMUST00000065143 6839 ntAPPRIS P4 TSL 1 (best) BASIC13.07□□□□□ -0.32
Hoxd3P09027 Fam69a-201ENSMUST00000031198 2721 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Hoxd3P09027 Il17re-203ENSMUST00000101065 1973 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Hoxd3P09027 Uhrf2-201ENSMUST00000025739 3536 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Hoxd3P09027 Klhdc8b-214ENSMUST00000195435 1612 ntTSL 5 BASIC13.07□□□□□ -0.32
Hoxd3P09027 Ffar3-201ENSMUST00000094583 1625 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Hoxd3P09027 Rnf112-202ENSMUST00000060255 3161 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Hoxd3P09027 Ccdc17-201ENSMUST00000051869 2003 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Hoxd3P09027 Foxp4-204ENSMUST00000113265 3999 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Hoxd3P09027 Ccni-201ENSMUST00000058550 2804 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Hoxd3P09027 Inppl1-201ENSMUST00000035836 4995 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Hoxd3P09027 Kmt5b-203ENSMUST00000113968 3216 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Hoxd3P09027 Znhit1-203ENSMUST00000111090 698 ntTSL 2 BASIC13.07□□□□□ -0.32
Hoxd3P09027 Gm13563-202ENSMUST00000150375 851 ntTSL 3 BASIC13.07□□□□□ -0.32
Hoxd3P09027 Gm21057-201ENSMUST00000206022 670 ntTSL 3 BASIC13.07□□□□□ -0.32
Hoxd3P09027 Gm5587-201ENSMUST00000206270 674 ntBASIC13.07□□□□□ -0.32
Retrieved 100 of 76,532 protein–RNA pairs in 32.8 ms