Protein–RNA interactions for Protein: O88696

Clpp, ATP-dependent Clp protease proteolytic subunit, mitochondrial, mousemouse

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ClppO88696 Fez2-202ENSMUST00000112487 2020 ntAPPRIS ALT1 TSL 1 (best) BASIC16.43■□□□□ 0.22
ClppO88696 Dcaf12l2-201ENSMUST00000115057 2885 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
ClppO88696 Sphk1-202ENSMUST00000063446 2527 ntAPPRIS ALT2 TSL 2 BASIC16.43■□□□□ 0.22
ClppO88696 Slc39a11-201ENSMUST00000042657 2781 ntAPPRIS ALT2 TSL 2 BASIC16.43■□□□□ 0.22
ClppO88696 Fgf22-202ENSMUST00000219228 2167 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
ClppO88696 Lmbr1-207ENSMUST00000200564 1598 ntTSL 5 BASIC16.43■□□□□ 0.22
ClppO88696 Creld1-201ENSMUST00000032422 2306 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
ClppO88696 2410002F23Rik-217ENSMUST00000188111 2131 ntAPPRIS P2 TSL 2 BASIC16.42■□□□□ 0.22
ClppO88696 Naprt-201ENSMUST00000023237 1890 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
ClppO88696 Rhot1-201ENSMUST00000017831 3029 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
ClppO88696 Anapc7-201ENSMUST00000031422 2751 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
ClppO88696 Krt90-201ENSMUST00000023714 2534 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
ClppO88696 Atp9a-211ENSMUST00000178504 3668 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
ClppO88696 Ctnnal1-202ENSMUST00000107612 850 ntTSL 3 BASIC16.42■□□□□ 0.22
ClppO88696 Cldn18-203ENSMUST00000131922 860 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
ClppO88696 Gm17349-201ENSMUST00000163472 300 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
ClppO88696 Hist1h2br-203ENSMUST00000180288 1256 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
ClppO88696 Prok1-201ENSMUST00000049852 813 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
ClppO88696 Hist1h2bq-202ENSMUST00000091749 1254 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
ClppO88696 Nmnat3-201ENSMUST00000112935 2166 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
ClppO88696 A230050P20Rik-201ENSMUST00000043911 1683 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
ClppO88696 4930447C04Rik-201ENSMUST00000044000 2051 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
ClppO88696 Gpaa1-210ENSMUST00000172281 1809 ntTSL 5 BASIC16.42■□□□□ 0.22
ClppO88696 Slain1-201ENSMUST00000069443 2863 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
ClppO88696 Fignl2-201ENSMUST00000178140 4206 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
ClppO88696 Wisp2-201ENSMUST00000029188 1719 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
ClppO88696 Pnpt1-201ENSMUST00000020756 2707 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
ClppO88696 Spef1-201ENSMUST00000028801 2328 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
ClppO88696 Nfe2l2-201ENSMUST00000102672 2475 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
ClppO88696 A930001A20Rik-201ENSMUST00000182586 1366 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
ClppO88696 Nsfl1c-201ENSMUST00000028949 1364 ntAPPRIS ALT1 TSL 1 (best) BASIC16.41■□□□□ 0.22
ClppO88696 Gm10516-201ENSMUST00000180598 2615 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
ClppO88696 Tarbp1-201ENSMUST00000170518 6383 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
ClppO88696 Bend6-202ENSMUST00000115161 2231 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
ClppO88696 Lrrc27-202ENSMUST00000106104 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
ClppO88696 Trim28-201ENSMUST00000005705 3245 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
ClppO88696 Anks1b-202ENSMUST00000099366 2549 ntTSL 5 BASIC16.41■□□□□ 0.22
ClppO88696 Cxcl14-201ENSMUST00000021970 1827 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
ClppO88696 Gnptab-201ENSMUST00000020251 5390 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
ClppO88696 Tmem60-201ENSMUST00000115259 1147 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
ClppO88696 D3Ertd751e-205ENSMUST00000120167 773 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
ClppO88696 Slc10a4-201ENSMUST00000031127 2106 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
ClppO88696 Gfra4-202ENSMUST00000066958 783 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
ClppO88696 Olfr315-201ENSMUST00000081533 998 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
ClppO88696 Tlcd1-201ENSMUST00000092880 2700 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
ClppO88696 Fam149b-216ENSMUST00000225942 2151 ntAPPRIS ALT2 BASIC16.41■□□□□ 0.22
ClppO88696 Tnfrsf1a-201ENSMUST00000032491 2156 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
ClppO88696 Asic4-201ENSMUST00000037708 2464 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
ClppO88696 Kcnk3-201ENSMUST00000066295 3811 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
ClppO88696 Nagk-203ENSMUST00000113851 1323 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
ClppO88696 Acvr1c-204ENSMUST00000112608 1497 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
ClppO88696 Nipsnap1-201ENSMUST00000038570 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
ClppO88696 Tmem183a-201ENSMUST00000049470 3149 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
ClppO88696 Tmem47-203ENSMUST00000171953 1801 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
ClppO88696 Dach1-201ENSMUST00000069334 5063 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
ClppO88696 Ulk2-201ENSMUST00000004920 5743 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
ClppO88696 E230025N22Rik-201ENSMUST00000115682 2016 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
ClppO88696 Coq5-201ENSMUST00000040421 2037 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
ClppO88696 Cnpy1-201ENSMUST00000117098 2661 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
ClppO88696 Hmces-202ENSMUST00000113606 1572 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
ClppO88696 Cacna1c-216ENSMUST00000188522 7338 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
ClppO88696 AA467197-202ENSMUST00000110512 751 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
ClppO88696 Pabpc1l2b-ps-201ENSMUST00000124538 690 ntBASIC16.4■□□□□ 0.22
ClppO88696 Pdxk-ps-203ENSMUST00000183934 680 ntTSL 3 BASIC16.4■□□□□ 0.22
ClppO88696 Mir1668-201ENSMUST00000184114 107 ntBASIC16.4■□□□□ 0.22
ClppO88696 Gm28793-201ENSMUST00000190845 413 ntTSL 5 BASIC16.4■□□□□ 0.22
ClppO88696 Stx3-208ENSMUST00000211641 1018 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
ClppO88696 Grcc10-201ENSMUST00000004389 863 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
ClppO88696 4930465K10Rik-201ENSMUST00000056675 1238 ntBASIC16.4■□□□□ 0.22
ClppO88696 Lce1i-201ENSMUST00000090866 731 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
ClppO88696 Aire-204ENSMUST00000128241 1938 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
ClppO88696 Aire-205ENSMUST00000130972 1923 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
ClppO88696 Aire-212ENSMUST00000145975 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
ClppO88696 Aire-201ENSMUST00000019257 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
ClppO88696 Rasgrp2-208ENSMUST00000113476 2296 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
ClppO88696 Kcnt1-203ENSMUST00000114172 5219 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
ClppO88696 Rbm26-202ENSMUST00000100327 3634 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
ClppO88696 Phtf1-203ENSMUST00000090685 3006 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
ClppO88696 Mboat1-201ENSMUST00000047311 2905 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
ClppO88696 Pkp4-210ENSMUST00000168631 4484 ntAPPRIS ALT1 TSL 1 (best) BASIC16.39■□□□□ 0.21
ClppO88696 Pigw-202ENSMUST00000108080 1728 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
ClppO88696 Kctd1-202ENSMUST00000168989 3456 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
ClppO88696 Arpc4-201ENSMUST00000156898 2270 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
ClppO88696 4430402I18Rik-205ENSMUST00000162110 1559 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
ClppO88696 Rps6ka3-201ENSMUST00000033671 7244 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
ClppO88696 Pmpcb-201ENSMUST00000030882 1615 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
ClppO88696 Lce1j-201ENSMUST00000107304 420 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
ClppO88696 Gm6345-202ENSMUST00000180900 204 ntBASIC16.39■□□□□ 0.21
ClppO88696 Gm27389-201ENSMUST00000183622 195 ntBASIC16.39■□□□□ 0.21
ClppO88696 Klf13-202ENSMUST00000183817 599 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
ClppO88696 Lmbrd1-202ENSMUST00000186096 688 ntTSL 2 BASIC16.39■□□□□ 0.21
ClppO88696 Bcl7c-205ENSMUST00000205977 891 ntTSL 2 BASIC16.39■□□□□ 0.21
ClppO88696 Gm17949-201ENSMUST00000210548 1179 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
ClppO88696 D230030E09Rik-201ENSMUST00000222459 884 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
ClppO88696 Gm7367-201ENSMUST00000057611 492 ntBASIC16.39■□□□□ 0.21
ClppO88696 0610040J01Rik-201ENSMUST00000081747 2008 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
ClppO88696 Fam169b-201ENSMUST00000098378 2776 ntTSL 5 BASIC16.39■□□□□ 0.21
ClppO88696 Gjb3-201ENSMUST00000046532 1880 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
ClppO88696 Nfix-204ENSMUST00000109764 5476 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
ClppO88696 Crk-201ENSMUST00000017920 3642 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Retrieved 100 of 76,532 protein–RNA pairs in 28.9 ms