Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Dancr-204ENSMUST00000132389 2347 ntBASIC14.05□□□□□ -0.16
Hmgb3O54879 Nefh-201ENSMUST00000093369 3994 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
Hmgb3O54879 Ppm1h-206ENSMUST00000161487 2931 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Hmgb3O54879 Txnl4b-201ENSMUST00000034159 1890 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Hmgb3O54879 Cmip-202ENSMUST00000166750 2408 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
Hmgb3O54879 Lsp1-204ENSMUST00000105967 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Hmgb3O54879 Ctf1-201ENSMUST00000047393 1352 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Hmgb3O54879 Tmem183a-201ENSMUST00000049470 3149 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Hmgb3O54879 Kpna4-203ENSMUST00000194558 3726 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Hmgb3O54879 E230025N22Rik-201ENSMUST00000115682 2016 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Hmgb3O54879 Rtcb-201ENSMUST00000001834 2009 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Hmgb3O54879 Aqp1-201ENSMUST00000004774 2627 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Hmgb3O54879 Itgb7-201ENSMUST00000001327 2674 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Hmgb3O54879 Hoxc4-202ENSMUST00000165375 2121 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Hmgb3O54879 Mael-201ENSMUST00000038782 1546 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Hmgb3O54879 Anapc7-201ENSMUST00000031422 2751 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Hmgb3O54879 Car11-201ENSMUST00000003360 1585 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Hmgb3O54879 Wnk1-203ENSMUST00000088644 11330 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
Hmgb3O54879 Pmpcb-201ENSMUST00000030882 1615 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Hmgb3O54879 Ttc13-202ENSMUST00000117624 3096 ntTSL 5 BASIC14.04□□□□□ -0.16
Hmgb3O54879 Tmem81-201ENSMUST00000058167 1742 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Hmgb3O54879 Phf1-201ENSMUST00000073724 2429 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Hmgb3O54879 Kctd9-205ENSMUST00000152243 2528 ntTSL 2 BASIC14.04□□□□□ -0.16
Hmgb3O54879 Tbx3-201ENSMUST00000018748 4856 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Hmgb3O54879 Shc1-202ENSMUST00000094378 2617 ntAPPRIS ALT1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Hmgb3O54879 Rab5c-202ENSMUST00000107364 1915 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Hmgb3O54879 Pnpt1-201ENSMUST00000020756 2707 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Hmgb3O54879 Ssfa2-202ENSMUST00000111785 5168 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Hmgb3O54879 Asph-210ENSMUST00000108337 2836 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Hmgb3O54879 Polr3d-201ENSMUST00000000793 2016 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Hmgb3O54879 Cd5-201ENSMUST00000025571 2069 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Hmgb3O54879 Thap8-201ENSMUST00000014072 1182 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
Hmgb3O54879 Ccdc85b-201ENSMUST00000179549 609 ntAPPRIS P1 BASIC14.04□□□□□ -0.16
Hmgb3O54879 Pantr1-210ENSMUST00000185599 343 ntTSL 3 BASIC14.04□□□□□ -0.16
Hmgb3O54879 Nubpl-201ENSMUST00000040090 2987 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Hmgb3O54879 Ferd3l-201ENSMUST00000061035 886 ntAPPRIS P1 BASIC14.04□□□□□ -0.16
Hmgb3O54879 Acbd6-202ENSMUST00000080138 993 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Hmgb3O54879 Dgkq-201ENSMUST00000053913 4938 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Hmgb3O54879 Abcd4-201ENSMUST00000021666 2309 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Hmgb3O54879 Gabrg3-202ENSMUST00000068911 9767 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Hmgb3O54879 Shank2-203ENSMUST00000105902 8988 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
Hmgb3O54879 Gclc-201ENSMUST00000034905 3423 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Hmgb3O54879 Spc25-202ENSMUST00000112320 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Hmgb3O54879 Pde8b-202ENSMUST00000067082 2598 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
Hmgb3O54879 Rnf128-201ENSMUST00000113026 2750 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Hmgb3O54879 Ikbke-204ENSMUST00000161764 2867 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Hmgb3O54879 Wdr12-202ENSMUST00000117438 3251 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Hmgb3O54879 Slc29a1-202ENSMUST00000064889 1988 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
Hmgb3O54879 Zic3-202ENSMUST00000088629 1951 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Hmgb3O54879 Gm21974-201ENSMUST00000126662 2037 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
Hmgb3O54879 Tmprss5-201ENSMUST00000070390 2047 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Hmgb3O54879 Zfp606-201ENSMUST00000098822 4748 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
Hmgb3O54879 Rnf103-202ENSMUST00000114178 3431 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Hmgb3O54879 Agfg1-205ENSMUST00000187899 2078 ntTSL 5 BASIC14.03□□□□□ -0.16
Hmgb3O54879 Dnajc6-205ENSMUST00000106933 5191 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Hmgb3O54879 E330009J07Rik-202ENSMUST00000101492 6742 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Hmgb3O54879 Exoc8-201ENSMUST00000098312 4598 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
Hmgb3O54879 Wscd1-203ENSMUST00000108511 2866 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
Hmgb3O54879 Mrpl57-201ENSMUST00000022538 2877 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Hmgb3O54879 St8sia2-201ENSMUST00000026896 5368 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Hmgb3O54879 Hist1h4a-201ENSMUST00000102964 539 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
Hmgb3O54879 Gm12821-201ENSMUST00000120022 600 ntBASIC14.03□□□□□ -0.16
Hmgb3O54879 Gm45417-201ENSMUST00000209533 758 ntBASIC14.03□□□□□ -0.16
Hmgb3O54879 Zfp324-204ENSMUST00000210619 447 ntTSL 3 BASIC14.03□□□□□ -0.16
Hmgb3O54879 Tpra1-223ENSMUST00000204765 1738 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Hmgb3O54879 9930012K11Rik-205ENSMUST00000153871 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Hmgb3O54879 Polr3e-203ENSMUST00000207481 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Hmgb3O54879 Plekha4-202ENSMUST00000209517 2577 ntAPPRIS P2 TSL 5 BASIC14.03□□□□□ -0.16
Hmgb3O54879 G3bp2-204ENSMUST00000169094 2716 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
Hmgb3O54879 Sh3bp2-203ENSMUST00000118545 3034 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Hmgb3O54879 Fgfr2-215ENSMUST00000122054 3323 ntAPPRIS P4 TSL 1 (best) BASIC14.03□□□□□ -0.16
Hmgb3O54879 Ctnna2-205ENSMUST00000161846 4018 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Hmgb3O54879 Mapk8ip3-205ENSMUST00000119115 4173 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Hmgb3O54879 Chst11-201ENSMUST00000040110 5527 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Hmgb3O54879 Gm26578-201ENSMUST00000181702 4611 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
Hmgb3O54879 Usp35-202ENSMUST00000168435 3982 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.16
Hmgb3O54879 Sgpp1-201ENSMUST00000021450 3323 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Hmgb3O54879 Glis1-201ENSMUST00000046005 2906 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.16
Hmgb3O54879 Celf6-204ENSMUST00000121266 2610 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
Hmgb3O54879 Itgav-201ENSMUST00000028499 7054 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.16
Hmgb3O54879 Gm27029-201ENSMUST00000107257 1898 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.16
Hmgb3O54879 Cdc123-201ENSMUST00000043864 1827 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Hmgb3O54879 Guca1b-202ENSMUST00000145462 1556 ntTSL 2 BASIC14.02□□□□□ -0.16
Hmgb3O54879 Arl4d-201ENSMUST00000039388 1382 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Hmgb3O54879 Hagh-201ENSMUST00000024974 1101 ntAPPRIS ALT1 TSL 5 BASIC14.02□□□□□ -0.17
Hmgb3O54879 Pop5-201ENSMUST00000081497 1025 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
Hmgb3O54879 Rundc3b-201ENSMUST00000047485 3677 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
Hmgb3O54879 Zfp384-207ENSMUST00000112427 3072 ntAPPRIS P2 TSL 5 BASIC14.02□□□□□ -0.17
Hmgb3O54879 Nepro-201ENSMUST00000048788 2866 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Hmgb3O54879 Vegfa-201ENSMUST00000024747 2765 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Hmgb3O54879 Kcnq4-201ENSMUST00000030376 3919 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
Hmgb3O54879 Aste1-202ENSMUST00000123807 2349 ntAPPRIS ALT2 TSL 2 BASIC14.02□□□□□ -0.17
Hmgb3O54879 Btbd3-202ENSMUST00000091556 4657 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Hmgb3O54879 Lhfp-203ENSMUST00000147139 1932 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
Hmgb3O54879 Taf10-203ENSMUST00000141116 4281 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Hmgb3O54879 1700041G16Rik-202ENSMUST00000186344 1824 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Hmgb3O54879 Etv3-202ENSMUST00000119109 5309 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Hmgb3O54879 Pick1-206ENSMUST00000166155 1699 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Hmgb3O54879 Kbtbd2-202ENSMUST00000114323 3816 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Hmgb3O54879 Zfp326-201ENSMUST00000031227 2667 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Retrieved 100 of 76,532 protein–RNA pairs in 45.7 ms