Protein–RNA interactions for Protein: O35988

Sdc4, Syndecan-4, mousemouse

Known RBP Predictions only

Length 198 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc4O35988 Thrsp-201ENSMUST00000043077 1277 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Sdc4O35988 Gzme-201ENSMUST00000089549 916 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Sdc4O35988 Fam104a-201ENSMUST00000120194 2619 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Sdc4O35988 Gm19569-202ENSMUST00000184658 1305 ntTSL 2 BASIC17.37■□□□□ 0.37
Sdc4O35988 Hmbox1-203ENSMUST00000175744 1771 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Sdc4O35988 L3hypdh-201ENSMUST00000019862 1831 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Sdc4O35988 Proca1-203ENSMUST00000108317 1359 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
Sdc4O35988 Deaf1-209ENSMUST00000211537 2882 ntTSL 2 BASIC17.37■□□□□ 0.37
Sdc4O35988 Gne-202ENSMUST00000102936 2920 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Sdc4O35988 Pdxdc1-202ENSMUST00000115802 2466 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Sdc4O35988 Polr3h-201ENSMUST00000023113 2514 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Sdc4O35988 Gpd1-203ENSMUST00000162194 1515 ntTSL 5 BASIC17.37■□□□□ 0.37
Sdc4O35988 Rab11b-203ENSMUST00000173860 1544 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Sdc4O35988 Sqstm1-201ENSMUST00000015981 2673 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Sdc4O35988 Zmiz1-201ENSMUST00000007961 5397 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Sdc4O35988 Hirip3-201ENSMUST00000037248 2766 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Sdc4O35988 D1Ertd622e-204ENSMUST00000153115 3495 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Sdc4O35988 Rbl2-201ENSMUST00000034091 4925 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
Sdc4O35988 Mycn-202ENSMUST00000130990 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Sdc4O35988 Mir770-201ENSMUST00000103252 94 ntBASIC17.36■□□□□ 0.37
Sdc4O35988 Taco1os-201ENSMUST00000140736 644 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Sdc4O35988 AC130713.1-201ENSMUST00000228853 1096 ntBASIC17.36■□□□□ 0.37
Sdc4O35988 Insl3-201ENSMUST00000034261 623 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Sdc4O35988 Bcap29-201ENSMUST00000020979 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Sdc4O35988 Mmp17-201ENSMUST00000031390 6422 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Sdc4O35988 Snx21-201ENSMUST00000056181 2590 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Sdc4O35988 Tigd3-201ENSMUST00000055911 2114 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Sdc4O35988 Usp21-202ENSMUST00000111305 2278 ntAPPRIS P2 TSL 5 BASIC17.36■□□□□ 0.37
Sdc4O35988 Donson-201ENSMUST00000023682 2360 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Sdc4O35988 Ric3-202ENSMUST00000120876 1633 ntAPPRIS ALT1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Sdc4O35988 Klhdc8a-201ENSMUST00000046071 4269 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Sdc4O35988 Acaa1a-201ENSMUST00000039784 1762 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Sdc4O35988 Ppp1r9b-201ENSMUST00000038696 4508 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Sdc4O35988 Ptpa-202ENSMUST00000113601 1838 ntTSL 5 BASIC17.35■□□□□ 0.37
Sdc4O35988 Mfsd10-202ENSMUST00000114329 1906 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Sdc4O35988 Cdh2-201ENSMUST00000025166 4843 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Sdc4O35988 Gm13186-201ENSMUST00000118031 316 ntBASIC17.35■□□□□ 0.37
Sdc4O35988 Mocs1-202ENSMUST00000165390 729 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Sdc4O35988 Pyy-201ENSMUST00000017455 555 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
Sdc4O35988 Gprin1-202ENSMUST00000135343 4248 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Sdc4O35988 Alcam-201ENSMUST00000023312 6036 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Sdc4O35988 Irak2-203ENSMUST00000089023 1734 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Sdc4O35988 Acvrl1-203ENSMUST00000119063 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Sdc4O35988 Sars2-201ENSMUST00000094632 1868 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Sdc4O35988 Haus8-201ENSMUST00000035960 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Sdc4O35988 Fam53a-201ENSMUST00000045329 2346 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Sdc4O35988 Idh1-201ENSMUST00000097709 2302 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Sdc4O35988 Fam135a-201ENSMUST00000027337 5536 ntAPPRIS P2 TSL 5 BASIC17.34■□□□□ 0.37
Sdc4O35988 Ern1-204ENSMUST00000106801 1957 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Sdc4O35988 Fam110a-204ENSMUST00000109865 1853 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
Sdc4O35988 Cobll1-205ENSMUST00000112431 5024 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Sdc4O35988 Fnbp1-205ENSMUST00000113552 1910 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Sdc4O35988 Bfsp2-201ENSMUST00000124310 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Sdc4O35988 Mtif3-201ENSMUST00000016654 2131 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Sdc4O35988 Xpo4-209ENSMUST00000174545 8680 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Sdc4O35988 Kif7-202ENSMUST00000178048 4524 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Sdc4O35988 Flg-207ENSMUST00000180293 768 ntAPPRIS ALT2 BASIC17.34■□□□□ 0.37
Sdc4O35988 Gm26627-201ENSMUST00000181540 1487 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Sdc4O35988 5830415G21Rik-201ENSMUST00000192543 1332 ntBASIC17.34■□□□□ 0.37
Sdc4O35988 Gm42900-201ENSMUST00000197184 2167 ntBASIC17.34■□□□□ 0.37
Sdc4O35988 F12-201ENSMUST00000021948 1960 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Sdc4O35988 Doc2g-201ENSMUST00000025806 1446 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Sdc4O35988 Rpp25l-201ENSMUST00000038434 856 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Sdc4O35988 Trap1-201ENSMUST00000006137 2320 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Sdc4O35988 Aldh7a1-201ENSMUST00000066208 1914 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
Sdc4O35988 Ostm1-201ENSMUST00000040718 3006 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Sdc4O35988 Col11a2-203ENSMUST00000114255 5722 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
Sdc4O35988 Tenm3-204ENSMUST00000110346 2267 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
Sdc4O35988 Ankrd22-201ENSMUST00000025686 1766 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Sdc4O35988 Tmem94-202ENSMUST00000103033 5238 ntAPPRIS P2 TSL 2 BASIC17.33■□□□□ 0.37
Sdc4O35988 Ubxn11-202ENSMUST00000074690 1573 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.37
Sdc4O35988 Gdf15-201ENSMUST00000003808 1545 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Sdc4O35988 Tbcb-201ENSMUST00000006254 1416 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Sdc4O35988 Gm6190-201ENSMUST00000220683 1374 ntBASIC17.33■□□□□ 0.36
Sdc4O35988 Gm11336-201ENSMUST00000118168 334 ntBASIC17.33■□□□□ 0.36
Sdc4O35988 Aicda-202ENSMUST00000160685 1292 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Sdc4O35988 Ank2-226ENSMUST00000189368 339 ntBASIC17.33■□□□□ 0.36
Sdc4O35988 4933412L11Rik-201ENSMUST00000203702 1044 ntBASIC17.33■□□□□ 0.36
Sdc4O35988 BC049762-201ENSMUST00000054226 760 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Sdc4O35988 B3gnt9-202ENSMUST00000136822 2516 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
Sdc4O35988 Kat2b-ps-201ENSMUST00000128468 2490 ntBASIC17.33■□□□□ 0.36
Sdc4O35988 Ttc14-203ENSMUST00000117915 4913 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
Sdc4O35988 Ttc39a-201ENSMUST00000064129 2356 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
Sdc4O35988 Npnt-202ENSMUST00000042744 4619 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
Sdc4O35988 Rnf157-202ENSMUST00000106398 4553 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
Sdc4O35988 Gna11-201ENSMUST00000043604 3414 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Sdc4O35988 Ddhd2-206ENSMUST00000211688 2265 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Sdc4O35988 2810459M11Rik-202ENSMUST00000165824 3331 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
Sdc4O35988 Vps4a-201ENSMUST00000034388 2178 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Sdc4O35988 Snx30-201ENSMUST00000030080 7314 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Sdc4O35988 Gm13032-201ENSMUST00000151848 2001 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Sdc4O35988 Nrl-201ENSMUST00000062232 2504 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Sdc4O35988 Tmem198-201ENSMUST00000050899 2456 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Sdc4O35988 Ascl2-201ENSMUST00000009392 1605 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Sdc4O35988 Arhgef10-201ENSMUST00000084207 5528 ntAPPRIS P4 TSL 1 (best) BASIC17.32■□□□□ 0.36
Sdc4O35988 Adra2a-201ENSMUST00000036700 3801 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
Sdc4O35988 Trim54-202ENSMUST00000202769 1408 ntAPPRIS ALT1 TSL 5 BASIC17.32■□□□□ 0.36
Sdc4O35988 Stox1-202ENSMUST00000133371 3510 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Sdc4O35988 Nxn-201ENSMUST00000021204 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Sdc4O35988 Sh3glb1-202ENSMUST00000198254 5945 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Retrieved 100 of 76,532 protein–RNA pairs in 20.3 ms