Protein–RNA interactions for Protein: A2AX52

Col6a4, Collagen alpha-4(VI) chain, mousemouse

Predictions only

Length 2,309 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a4A2AX52 Ppil3-204ENSMUST00000117069 1363 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Col6a4A2AX52 Gm6190-201ENSMUST00000220683 1374 ntBASIC14.18□□□□□ -0.14
Col6a4A2AX52 Amn1-201ENSMUST00000095319 1369 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Col6a4A2AX52 Ppan-201ENSMUST00000004203 1670 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Col6a4A2AX52 Sbsn-202ENSMUST00000182227 432 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
Col6a4A2AX52 Sbsn-203ENSMUST00000182229 732 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Col6a4A2AX52 Lmo4-207ENSMUST00000196264 1263 ntTSL 5 BASIC14.18□□□□□ -0.14
Col6a4A2AX52 AC108846.1-201ENSMUST00000214531 513 ntBASIC14.18□□□□□ -0.14
Col6a4A2AX52 Ube2f-201ENSMUST00000059743 1154 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Col6a4A2AX52 Trim63-202ENSMUST00000105875 1886 ntAPPRIS P2 TSL 5 BASIC14.17□□□□□ -0.14
Col6a4A2AX52 Mapre3-201ENSMUST00000031058 2021 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Col6a4A2AX52 Gm43213-201ENSMUST00000151866 1790 ntBASIC14.17□□□□□ -0.14
Col6a4A2AX52 Otx2-204ENSMUST00000122009 1737 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Col6a4A2AX52 Yipf2-203ENSMUST00000180365 2014 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Col6a4A2AX52 Aldoa-ps3-201ENSMUST00000217558 306 ntBASIC14.17□□□□□ -0.14
Col6a4A2AX52 Ptprcap-201ENSMUST00000061086 927 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Col6a4A2AX52 Slbp-202ENSMUST00000075670 1027 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Col6a4A2AX52 Diras1-201ENSMUST00000055125 2953 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Col6a4A2AX52 Gas2-203ENSMUST00000107591 2232 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Col6a4A2AX52 Zfp3-201ENSMUST00000060444 2061 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Col6a4A2AX52 Tpm1-215ENSMUST00000113705 1759 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Col6a4A2AX52 Pknox1-203ENSMUST00000175806 2272 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Col6a4A2AX52 Rnpc3-203ENSMUST00000106536 1839 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
Col6a4A2AX52 Card10-202ENSMUST00000164826 4726 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Col6a4A2AX52 Srsf11-202ENSMUST00000072875 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Col6a4A2AX52 Zfp644-205ENSMUST00000112698 5689 ntAPPRIS P2 TSL 5 BASIC14.17□□□□□ -0.14
Col6a4A2AX52 Nipsnap3b-201ENSMUST00000015391 1552 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Col6a4A2AX52 Hspbp1-201ENSMUST00000079970 1593 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Col6a4A2AX52 Tmem44-204ENSMUST00000140402 2405 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Col6a4A2AX52 Mier2-212ENSMUST00000172158 1400 ntTSL 5 BASIC14.17□□□□□ -0.14
Col6a4A2AX52 Gm128-202ENSMUST00000107197 1289 ntTSL 2 BASIC14.16□□□□□ -0.14
Col6a4A2AX52 Tpt1-201ENSMUST00000110894 1169 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col6a4A2AX52 Gm12350-201ENSMUST00000121208 462 ntBASIC14.16□□□□□ -0.14
Col6a4A2AX52 Mkln1os-202ENSMUST00000144232 964 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Col6a4A2AX52 Gm27702-201ENSMUST00000184512 56 ntBASIC14.16□□□□□ -0.14
Col6a4A2AX52 Vsig2-201ENSMUST00000002008 1166 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col6a4A2AX52 Rps6ka3-201ENSMUST00000033671 7244 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col6a4A2AX52 Elavl1-201ENSMUST00000098950 5743 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col6a4A2AX52 Mamstr-201ENSMUST00000148532 1606 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col6a4A2AX52 Ero1lb-203ENSMUST00000221560 1964 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Col6a4A2AX52 Mast4-202ENSMUST00000164111 2350 ntTSL 2 BASIC14.16□□□□□ -0.14
Col6a4A2AX52 4930447C04Rik-201ENSMUST00000044000 2051 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col6a4A2AX52 Smc6-201ENSMUST00000020931 5603 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col6a4A2AX52 Emd-201ENSMUST00000002029 1595 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col6a4A2AX52 A530010L16Rik-201ENSMUST00000212007 2336 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Col6a4A2AX52 Sh2b1-203ENSMUST00000205440 3089 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col6a4A2AX52 Camk2n1-201ENSMUST00000050918 4444 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col6a4A2AX52 Gm45906-201ENSMUST00000208911 1430 ntBASIC14.16□□□□□ -0.14
Col6a4A2AX52 Meox1-201ENSMUST00000057054 2228 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col6a4A2AX52 Ndufb6-202ENSMUST00000108108 480 ntTSL 3 BASIC14.16□□□□□ -0.14
Col6a4A2AX52 Tex30-213ENSMUST00000156392 1122 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
Col6a4A2AX52 Gm26549-201ENSMUST00000181112 1209 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Col6a4A2AX52 Gm27217-201ENSMUST00000183438 882 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Col6a4A2AX52 Gm29629-201ENSMUST00000187926 386 ntTSL 3 BASIC14.16□□□□□ -0.14
Col6a4A2AX52 Gm37280-201ENSMUST00000194583 375 ntTSL 3 BASIC14.16□□□□□ -0.14
Col6a4A2AX52 Ctdsp2-202ENSMUST00000105256 4817 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col6a4A2AX52 Dag1-201ENSMUST00000080435 4364 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col6a4A2AX52 Mis18a-201ENSMUST00000099554 1333 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col6a4A2AX52 Bptf-201ENSMUST00000057892 11488 ntAPPRIS P2 TSL 5 BASIC14.16□□□□□ -0.14
Col6a4A2AX52 Mcfd2-201ENSMUST00000024963 1823 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col6a4A2AX52 Sqor-201ENSMUST00000005953 1804 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col6a4A2AX52 Evx2-201ENSMUST00000001867 4191 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col6a4A2AX52 Klhl36-201ENSMUST00000034287 2181 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col6a4A2AX52 Timm23-201ENSMUST00000013845 1173 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col6a4A2AX52 Tpt1-205ENSMUST00000142061 996 ntTSL 5 BASIC14.15□□□□□ -0.14
Col6a4A2AX52 Gm10052-201ENSMUST00000168019 960 ntBASIC14.15□□□□□ -0.14
Col6a4A2AX52 Gm7729-201ENSMUST00000050143 801 ntBASIC14.15□□□□□ -0.14
Col6a4A2AX52 Rnf146-202ENSMUST00000160144 4323 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col6a4A2AX52 Tob1-201ENSMUST00000041589 2288 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col6a4A2AX52 Hsdl1-201ENSMUST00000036049 3141 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col6a4A2AX52 Rtkn-201ENSMUST00000065512 2191 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col6a4A2AX52 St8sia5-202ENSMUST00000079618 1989 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col6a4A2AX52 Ccdc17-201ENSMUST00000051869 2003 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col6a4A2AX52 Gck-202ENSMUST00000109822 1786 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Col6a4A2AX52 Fam57b-201ENSMUST00000079423 2328 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col6a4A2AX52 Map1lc3b-204ENSMUST00000181826 2633 ntBASIC14.15□□□□□ -0.14
Col6a4A2AX52 Zfp787-205ENSMUST00000207957 880 ntTSL 5 BASIC14.15□□□□□ -0.14
Col6a4A2AX52 Spata33-204ENSMUST00000212346 715 ntTSL 2 BASIC14.15□□□□□ -0.14
Col6a4A2AX52 AC138767.1-201ENSMUST00000222661 415 ntBASIC14.15□□□□□ -0.14
Col6a4A2AX52 Magohb-201ENSMUST00000032307 767 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col6a4A2AX52 A330070K13Rik-201ENSMUST00000063656 633 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col6a4A2AX52 4732440D04Rik-203ENSMUST00000191825 5428 ntBASIC14.15□□□□□ -0.14
Col6a4A2AX52 Ppp2r2d-207ENSMUST00000155672 1938 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Col6a4A2AX52 Rilpl1-201ENSMUST00000062153 2249 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col6a4A2AX52 Ap2a2-201ENSMUST00000003038 4646 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col6a4A2AX52 Nrxn2-204ENSMUST00000113461 5505 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
Col6a4A2AX52 Nucb2-201ENSMUST00000032895 1685 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col6a4A2AX52 Snap91-201ENSMUST00000036347 4237 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
Col6a4A2AX52 Enoph1-201ENSMUST00000031268 1420 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col6a4A2AX52 Fxyd6-203ENSMUST00000217381 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col6a4A2AX52 Hjurp-202ENSMUST00000065420 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col6a4A2AX52 Get4-202ENSMUST00000110878 1180 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col6a4A2AX52 Trmt112-ps2-201ENSMUST00000117987 378 ntBASIC14.14□□□□□ -0.15
Col6a4A2AX52 Fosb-206ENSMUST00000208446 1090 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Col6a4A2AX52 Psmg3-201ENSMUST00000031531 883 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col6a4A2AX52 Ndufb10-201ENSMUST00000045602 732 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col6a4A2AX52 Cnbp-201ENSMUST00000032138 2178 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Col6a4A2AX52 Nagk-201ENSMUST00000037376 1405 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col6a4A2AX52 Cdca4-202ENSMUST00000220899 1994 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col6a4A2AX52 Otud5-202ENSMUST00000115665 3821 ntTSL 5 BASIC14.14□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 36.6 ms