Protein–RNA interactions for Protein: A0A0B4J1J9

Trav11, T cell receptor alpha variable 11 (Fragment), mousemouse

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav11A0A0B4J1J9 Fads3-201ENSMUST00000115995 3269 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Trav11A0A0B4J1J9 Btaf1-201ENSMUST00000099494 7204 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Trav11A0A0B4J1J9 Chst10-206ENSMUST00000194361 2996 ntAPPRIS ALT2 TSL 1 (best) BASIC11.64□□□□□ -0.55
Trav11A0A0B4J1J9 Spi1-201ENSMUST00000002180 2034 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Trav11A0A0B4J1J9 Itgb7-201ENSMUST00000001327 2674 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Trav11A0A0B4J1J9 Mettl21a-201ENSMUST00000053469 2666 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Trav11A0A0B4J1J9 Eif4g3-203ENSMUST00000084215 8134 ntAPPRIS ALT2 TSL 5 BASIC11.63□□□□□ -0.55
Trav11A0A0B4J1J9 Dnajc6-205ENSMUST00000106933 5191 ntAPPRIS ALT2 TSL 1 (best) BASIC11.63□□□□□ -0.55
Trav11A0A0B4J1J9 Ror1-201ENSMUST00000039630 5762 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Trav11A0A0B4J1J9 Mbp-201ENSMUST00000047865 2492 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
Trav11A0A0B4J1J9 Rarg-202ENSMUST00000063339 2718 ntAPPRIS ALT2 TSL 1 (best) BASIC11.63□□□□□ -0.55
Trav11A0A0B4J1J9 Opn4-202ENSMUST00000168444 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC11.63□□□□□ -0.55
Trav11A0A0B4J1J9 Slc12a5-207ENSMUST00000202223 5690 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
Trav11A0A0B4J1J9 Hpca-202ENSMUST00000095807 1666 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Trav11A0A0B4J1J9 Actr3-201ENSMUST00000027579 2554 ntAPPRIS P1 TSL 5 BASIC11.63□□□□□ -0.55
Trav11A0A0B4J1J9 Krt9-201ENSMUST00000059707 2580 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Trav11A0A0B4J1J9 Tfap2c-201ENSMUST00000030391 2838 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Trav11A0A0B4J1J9 Nipsnap1-201ENSMUST00000038570 1926 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Trav11A0A0B4J1J9 Tedc2-201ENSMUST00000024930 2166 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Trav11A0A0B4J1J9 Rpl26-202ENSMUST00000101014 657 ntAPPRIS ALT1 TSL 5 BASIC11.63□□□□□ -0.55
Trav11A0A0B4J1J9 Dusp15-202ENSMUST00000109811 753 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
Trav11A0A0B4J1J9 Hmga1-205ENSMUST00000118599 529 ntAPPRIS P3 TSL 3 BASIC11.63□□□□□ -0.55
Trav11A0A0B4J1J9 A730056A06Rik-202ENSMUST00000206959 526 ntTSL 3 BASIC11.63□□□□□ -0.55
Trav11A0A0B4J1J9 D830036C21Rik-201ENSMUST00000207444 453 ntTSL 3 BASIC11.63□□□□□ -0.55
Trav11A0A0B4J1J9 Dtnbp1-208ENSMUST00000222805 1231 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
Trav11A0A0B4J1J9 Mrpl2-201ENSMUST00000002844 1031 ntAPPRIS P2 TSL 1 (best) BASIC11.63□□□□□ -0.55
Trav11A0A0B4J1J9 4930505A04Rik-201ENSMUST00000041763 904 ntAPPRIS P1 TSL 2 BASIC11.63□□□□□ -0.55
Trav11A0A0B4J1J9 Lrriq4-203ENSMUST00000172350 1797 ntAPPRIS P3 TSL 5 BASIC11.63□□□□□ -0.55
Trav11A0A0B4J1J9 Pole4-201ENSMUST00000095786 1769 ntAPPRIS P2 TSL 1 (best) BASIC11.63□□□□□ -0.55
Trav11A0A0B4J1J9 Klc3-202ENSMUST00000108457 1632 ntAPPRIS P1 TSL 5 BASIC11.63□□□□□ -0.55
Trav11A0A0B4J1J9 Syt6-202ENSMUST00000117221 4394 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
Trav11A0A0B4J1J9 Relb-201ENSMUST00000049912 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC11.63□□□□□ -0.55
Trav11A0A0B4J1J9 Slc9a6-202ENSMUST00000114784 4449 ntTSL 5 BASIC11.63□□□□□ -0.55
Trav11A0A0B4J1J9 Mri1-203ENSMUST00000126435 2819 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Trav11A0A0B4J1J9 Hey2-201ENSMUST00000019924 2550 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Trav11A0A0B4J1J9 Dok4-201ENSMUST00000046461 2590 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Trav11A0A0B4J1J9 Cul1-201ENSMUST00000031697 3161 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Trav11A0A0B4J1J9 Aim2-204ENSMUST00000166137 2079 ntAPPRIS P1 TSL 5 BASIC11.63□□□□□ -0.55
Trav11A0A0B4J1J9 Gm26526-201ENSMUST00000181075 2927 ntTSL 5 BASIC11.63□□□□□ -0.55
Trav11A0A0B4J1J9 Bag4-201ENSMUST00000038498 4876 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Trav11A0A0B4J1J9 Gm11620-201ENSMUST00000118770 1845 ntBASIC11.63□□□□□ -0.55
Trav11A0A0B4J1J9 C430049E01Rik-201ENSMUST00000207913 1820 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Trav11A0A0B4J1J9 Tead3-201ENSMUST00000114799 2448 ntAPPRIS P2 TSL 1 (best) BASIC11.62□□□□□ -0.55
Trav11A0A0B4J1J9 Rtp2-201ENSMUST00000061030 2421 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Trav11A0A0B4J1J9 Megf11-210ENSMUST00000164113 6018 ntTSL 5 BASIC11.62□□□□□ -0.55
Trav11A0A0B4J1J9 Rpf1-201ENSMUST00000029838 1661 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Trav11A0A0B4J1J9 Agps-201ENSMUST00000047232 7359 ntAPPRIS P2 TSL 1 (best) BASIC11.62□□□□□ -0.55
Trav11A0A0B4J1J9 Txndc11-201ENSMUST00000038424 3095 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Trav11A0A0B4J1J9 C2cd2-201ENSMUST00000170757 6555 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Trav11A0A0B4J1J9 Rab37-202ENSMUST00000067754 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC11.62□□□□□ -0.55
Trav11A0A0B4J1J9 Vangl2-203ENSMUST00000111264 2349 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Trav11A0A0B4J1J9 2610528J11Rik-202ENSMUST00000106367 736 ntAPPRIS P1 TSL 2 BASIC11.62□□□□□ -0.55
Trav11A0A0B4J1J9 Rpl27-202ENSMUST00000107249 732 ntAPPRIS P1 TSL 2 BASIC11.62□□□□□ -0.55
Trav11A0A0B4J1J9 Pigp-202ENSMUST00000113906 745 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Trav11A0A0B4J1J9 Gm42642-201ENSMUST00000200683 355 ntBASIC11.62□□□□□ -0.55
Trav11A0A0B4J1J9 AC061963.1-203ENSMUST00000213473 453 ntTSL 3 BASIC11.62□□□□□ -0.55
Trav11A0A0B4J1J9 Ebf1-203ENSMUST00000109268 2864 ntAPPRIS ALT1 TSL 5 BASIC11.62□□□□□ -0.55
Trav11A0A0B4J1J9 Usp43-202ENSMUST00000108677 4447 ntAPPRIS ALT2 TSL 1 (best) BASIC11.62□□□□□ -0.55
Trav11A0A0B4J1J9 Flg-201ENSMUST00000050758 1488 ntBASIC11.62□□□□□ -0.55
Trav11A0A0B4J1J9 Grb7-201ENSMUST00000019456 2397 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Trav11A0A0B4J1J9 Ranbp9-201ENSMUST00000144326 3371 ntAPPRIS P2 TSL 5 BASIC11.62□□□□□ -0.55
Trav11A0A0B4J1J9 Tor1b-201ENSMUST00000028199 3039 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Trav11A0A0B4J1J9 Rcc2-201ENSMUST00000038893 3767 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Trav11A0A0B4J1J9 Dag1-203ENSMUST00000171412 4415 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Trav11A0A0B4J1J9 Cnppd1-208ENSMUST00000190679 2062 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Trav11A0A0B4J1J9 Ddhd1-203ENSMUST00000111828 9802 ntAPPRIS ALT2 TSL 1 (best) BASIC11.61□□□□□ -0.55
Trav11A0A0B4J1J9 Larp1b-206ENSMUST00000191872 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC11.61□□□□□ -0.55
Trav11A0A0B4J1J9 Wnt1-201ENSMUST00000023734 2378 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Trav11A0A0B4J1J9 Plekha4-202ENSMUST00000209517 2577 ntAPPRIS P2 TSL 5 BASIC11.61□□□□□ -0.55
Trav11A0A0B4J1J9 Nsmf-207ENSMUST00000116574 2863 ntTSL 5 BASIC11.61□□□□□ -0.55
Trav11A0A0B4J1J9 Aunip-201ENSMUST00000105866 1275 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Trav11A0A0B4J1J9 Ppp1r8-202ENSMUST00000105919 1090 ntAPPRIS ALT1 TSL 3 BASIC11.61□□□□□ -0.55
Trav11A0A0B4J1J9 Zfp637-201ENSMUST00000112858 650 ntTSL 2 BASIC11.61□□□□□ -0.55
Trav11A0A0B4J1J9 Zfp637-203ENSMUST00000112860 1231 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Trav11A0A0B4J1J9 Gm13401-201ENSMUST00000117074 291 ntBASIC11.61□□□□□ -0.55
Trav11A0A0B4J1J9 Pdcd5-201ENSMUST00000118501 684 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Trav11A0A0B4J1J9 Map1lc3b-203ENSMUST00000181521 775 ntTSL 3 BASIC11.61□□□□□ -0.55
Trav11A0A0B4J1J9 Gm38165-201ENSMUST00000191654 486 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Trav11A0A0B4J1J9 Wnt10b-205ENSMUST00000226846 1204 ntBASIC11.61□□□□□ -0.55
Trav11A0A0B4J1J9 Uqcc2-201ENSMUST00000025045 500 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Trav11A0A0B4J1J9 Gpr150-201ENSMUST00000056130 2146 ntAPPRIS P1 BASIC11.61□□□□□ -0.55
Trav11A0A0B4J1J9 Hist2h2aa2-201ENSMUST00000074976 528 ntAPPRIS P1 BASIC11.61□□□□□ -0.55
Trav11A0A0B4J1J9 Hist2h2aa1-201ENSMUST00000078756 586 ntAPPRIS P1 BASIC11.61□□□□□ -0.55
Trav11A0A0B4J1J9 Lrrfip2-201ENSMUST00000035078 3260 ntTSL 5 BASIC11.61□□□□□ -0.55
Trav11A0A0B4J1J9 Atxn7l3-201ENSMUST00000073234 3688 ntAPPRIS ALT1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Trav11A0A0B4J1J9 Kbtbd2-201ENSMUST00000114321 3868 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Trav11A0A0B4J1J9 F2rl3-201ENSMUST00000058099 1751 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Trav11A0A0B4J1J9 Camsap3-201ENSMUST00000057028 4450 ntAPPRIS P3 TSL 1 (best) BASIC11.61□□□□□ -0.55
Trav11A0A0B4J1J9 Ttpal-202ENSMUST00000109408 1999 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Trav11A0A0B4J1J9 Ggnbp2-201ENSMUST00000018547 2478 ntTSL 5 BASIC11.61□□□□□ -0.55
Trav11A0A0B4J1J9 Zfp800-202ENSMUST00000115320 4311 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Trav11A0A0B4J1J9 Hps6-201ENSMUST00000099393 2696 ntAPPRIS P1 BASIC11.61□□□□□ -0.55
Trav11A0A0B4J1J9 Golim4-201ENSMUST00000038563 5546 ntAPPRIS P3 TSL 1 (best) BASIC11.61□□□□□ -0.55
Trav11A0A0B4J1J9 Sacs-204ENSMUST00000121091 4581 ntAPPRIS ALT2 TSL 1 (best) BASIC11.6□□□□□ -0.55
Trav11A0A0B4J1J9 AC069562.2-201ENSMUST00000224644 2146 ntBASIC11.6□□□□□ -0.55
Trav11A0A0B4J1J9 Dph1-201ENSMUST00000044949 2139 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Trav11A0A0B4J1J9 Ppfia3-207ENSMUST00000211067 4565 ntAPPRIS P1 TSL 5 BASIC11.6□□□□□ -0.55
Trav11A0A0B4J1J9 Kif1c-201ENSMUST00000072187 5046 ntAPPRIS ALT2 TSL 1 (best) BASIC11.6□□□□□ -0.55
Trav11A0A0B4J1J9 Hmces-202ENSMUST00000113606 1572 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Trav11A0A0B4J1J9 Gprin1-201ENSMUST00000099506 4141 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Retrieved 100 of 76,532 protein–RNA pairs in 20.7 ms