Protein–RNA interactions for Protein: A0A0A6YWV4

Trbc1, T cell receptor beta, constant region 1 (Fragment), mousemouse

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbc1A0A0A6YWV4 6330411D24Rik-201ENSMUST00000211105 1568 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Trbc1A0A0A6YWV4 Lrch3-211ENSMUST00000170899 2752 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
Trbc1A0A0A6YWV4 Zxdc-203ENSMUST00000113539 4864 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
Trbc1A0A0A6YWV4 Ablim1-204ENSMUST00000111524 1251 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Trbc1A0A0A6YWV4 Tnnt2-202ENSMUST00000112085 1076 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
Trbc1A0A0A6YWV4 Tnnt2-203ENSMUST00000112086 1094 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
Trbc1A0A0A6YWV4 Tnnt2-204ENSMUST00000112087 1112 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
Trbc1A0A0A6YWV4 Gm13836-201ENSMUST00000121159 501 ntBASIC15.5■□□□□ 0.07
Trbc1A0A0A6YWV4 Ptf1aos-201ENSMUST00000122978 916 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Trbc1A0A0A6YWV4 Tnnt2-206ENSMUST00000178854 1076 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
Trbc1A0A0A6YWV4 Tnnt2-211ENSMUST00000189355 1112 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
Trbc1A0A0A6YWV4 Tnnt2-212ENSMUST00000189732 1123 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
Trbc1A0A0A6YWV4 Fkbp3-201ENSMUST00000021332 1022 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Trbc1A0A0A6YWV4 Cmc1-202ENSMUST00000215799 531 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Trbc1A0A0A6YWV4 Gm9987-201ENSMUST00000069768 567 ntBASIC15.5■□□□□ 0.07
Trbc1A0A0A6YWV4 Shisa2-201ENSMUST00000053949 3119 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Trbc1A0A0A6YWV4 Clcn2-202ENSMUST00000120099 2812 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
Trbc1A0A0A6YWV4 Nadk2-203ENSMUST00000100790 3665 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
Trbc1A0A0A6YWV4 Pagr1a-202ENSMUST00000200948 1430 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Trbc1A0A0A6YWV4 Gm42742-205ENSMUST00000202798 1412 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Trbc1A0A0A6YWV4 Eral1-201ENSMUST00000021183 2014 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Trbc1A0A0A6YWV4 Rhof-201ENSMUST00000031401 2208 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Trbc1A0A0A6YWV4 Apba1-201ENSMUST00000025830 6632 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Trbc1A0A0A6YWV4 Mpdu1-201ENSMUST00000018905 1321 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Trbc1A0A0A6YWV4 Elac2-202ENSMUST00000101049 2884 ntAPPRIS ALT2 TSL 5 BASIC15.49■□□□□ 0.07
Trbc1A0A0A6YWV4 Akap8l-201ENSMUST00000050214 2075 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Trbc1A0A0A6YWV4 Hmga1-204ENSMUST00000118570 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Trbc1A0A0A6YWV4 Krt13-201ENSMUST00000007275 1654 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Trbc1A0A0A6YWV4 Dcxr-202ENSMUST00000106148 830 ntTSL 2 BASIC15.49■□□□□ 0.07
Trbc1A0A0A6YWV4 Slc25a51-203ENSMUST00000132815 1005 ntAPPRIS P1 TSL 2 BASIC15.49■□□□□ 0.07
Trbc1A0A0A6YWV4 Gm3764-209ENSMUST00000181550 1093 ntTSL 3 BASIC15.49■□□□□ 0.07
Trbc1A0A0A6YWV4 Gm26938-201ENSMUST00000182839 744 ntAPPRIS P1 TSL 3 BASIC15.49■□□□□ 0.07
Trbc1A0A0A6YWV4 Cmip-202ENSMUST00000166750 2408 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
Trbc1A0A0A6YWV4 Slc25a3-201ENSMUST00000076694 1612 ntAPPRIS P2 TSL 1 (best) BASIC15.49■□□□□ 0.07
Trbc1A0A0A6YWV4 Gas2-201ENSMUST00000051912 2181 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Trbc1A0A0A6YWV4 Dut-201ENSMUST00000051605 1950 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Trbc1A0A0A6YWV4 Arrb1-210ENSMUST00000179755 7135 ntTSL 5 BASIC15.49■□□□□ 0.07
Trbc1A0A0A6YWV4 Arrb1-202ENSMUST00000098266 7132 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Trbc1A0A0A6YWV4 Trp73-203ENSMUST00000105643 1916 ntAPPRIS ALT2 TSL 5 BASIC15.49■□□□□ 0.07
Trbc1A0A0A6YWV4 Rogdi-207ENSMUST00000202281 1355 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Trbc1A0A0A6YWV4 Dusp12-201ENSMUST00000027970 1374 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Trbc1A0A0A6YWV4 Klhdc8a-201ENSMUST00000046071 4269 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Trbc1A0A0A6YWV4 2210016L21Rik-201ENSMUST00000031538 2607 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Trbc1A0A0A6YWV4 Col15a1-202ENSMUST00000102917 5172 ntAPPRIS P2 TSL 1 (best) BASIC15.48■□□□□ 0.07
Trbc1A0A0A6YWV4 Rasip1-201ENSMUST00000057927 3202 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Trbc1A0A0A6YWV4 Rtkn-201ENSMUST00000065512 2191 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
Trbc1A0A0A6YWV4 Samd4-211ENSMUST00000228404 3039 ntAPPRIS ALT2 BASIC15.48■□□□□ 0.07
Trbc1A0A0A6YWV4 Lhx5-201ENSMUST00000031591 2689 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Trbc1A0A0A6YWV4 Zfp691-201ENSMUST00000052715 2341 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Trbc1A0A0A6YWV4 Hoxb2-201ENSMUST00000100523 1628 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Trbc1A0A0A6YWV4 Klhl33-201ENSMUST00000164415 1602 ntTSL 5 BASIC15.48■□□□□ 0.07
Trbc1A0A0A6YWV4 Dnajb3-201ENSMUST00000119972 1051 ntAPPRIS P1 BASIC15.48■□□□□ 0.07
Trbc1A0A0A6YWV4 Gm32151-201ENSMUST00000223521 915 ntTSL 5 BASIC15.48■□□□□ 0.07
Trbc1A0A0A6YWV4 Eif4g3-202ENSMUST00000084214 6139 ntAPPRIS P2 TSL 1 (best) BASIC15.48■□□□□ 0.07
Trbc1A0A0A6YWV4 Rnf169-201ENSMUST00000080817 7147 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
Trbc1A0A0A6YWV4 Plac9a-201ENSMUST00000052286 1555 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Trbc1A0A0A6YWV4 Ccdc105-201ENSMUST00000105383 1714 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Trbc1A0A0A6YWV4 Katnbl1-201ENSMUST00000028552 2886 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Trbc1A0A0A6YWV4 Fam219b-202ENSMUST00000114200 3017 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Trbc1A0A0A6YWV4 2810425M01Rik-201ENSMUST00000180790 1850 ntTSL 5 BASIC15.48■□□□□ 0.07
Trbc1A0A0A6YWV4 Rab11fip3-202ENSMUST00000120691 5103 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
Trbc1A0A0A6YWV4 Plekha4-206ENSMUST00000211155 2044 ntAPPRIS ALT2 TSL 5 BASIC15.48■□□□□ 0.07
Trbc1A0A0A6YWV4 Gm16759-201ENSMUST00000126238 1393 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
Trbc1A0A0A6YWV4 Prss54-205ENSMUST00000213096 1501 ntAPPRIS P3 TSL 5 BASIC15.48■□□□□ 0.07
Trbc1A0A0A6YWV4 Gnao1-207ENSMUST00000138659 5526 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
Trbc1A0A0A6YWV4 Kcnh2-202ENSMUST00000115098 3193 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
Trbc1A0A0A6YWV4 Ric3-202ENSMUST00000120876 1633 ntAPPRIS ALT1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Trbc1A0A0A6YWV4 Trip10-201ENSMUST00000019631 2224 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
Trbc1A0A0A6YWV4 Slc2a8-204ENSMUST00000153484 1168 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
Trbc1A0A0A6YWV4 Gm2431-201ENSMUST00000171531 519 ntAPPRIS P1 TSL 5 BASIC15.47■□□□□ 0.07
Trbc1A0A0A6YWV4 Ccl27a-219ENSMUST00000173865 657 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
Trbc1A0A0A6YWV4 Gm18959-201ENSMUST00000208954 655 ntBASIC15.47■□□□□ 0.07
Trbc1A0A0A6YWV4 Zufsp-202ENSMUST00000218055 2180 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Trbc1A0A0A6YWV4 Pigf-201ENSMUST00000024957 988 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Trbc1A0A0A6YWV4 Ppp1r9b-201ENSMUST00000038696 4508 ntAPPRIS P2 TSL 1 (best) BASIC15.47■□□□□ 0.07
Trbc1A0A0A6YWV4 Cacna1c-216ENSMUST00000188522 7338 ntAPPRIS ALT2 TSL 5 BASIC15.47■□□□□ 0.07
Trbc1A0A0A6YWV4 Slc35e3-201ENSMUST00000079041 3489 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Trbc1A0A0A6YWV4 Map3k1-201ENSMUST00000109267 6978 ntAPPRIS P1 TSL 2 BASIC15.47■□□□□ 0.07
Trbc1A0A0A6YWV4 Dnajb2-208ENSMUST00000188346 1823 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Trbc1A0A0A6YWV4 Ncam2-202ENSMUST00000067602 3563 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
Trbc1A0A0A6YWV4 Nptn-212ENSMUST00000177292 1390 ntAPPRIS P1 TSL 5 BASIC15.47■□□□□ 0.07
Trbc1A0A0A6YWV4 Sphk1-202ENSMUST00000063446 2527 ntAPPRIS ALT2 TSL 2 BASIC15.47■□□□□ 0.07
Trbc1A0A0A6YWV4 AC125311.2-201ENSMUST00000227477 1940 ntBASIC15.47■□□□□ 0.07
Trbc1A0A0A6YWV4 Nipsnap1-201ENSMUST00000038570 1926 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Trbc1A0A0A6YWV4 Tm2d3-202ENSMUST00000065574 1478 ntAPPRIS P4 TSL 1 (best) BASIC15.46■□□□□ 0.07
Trbc1A0A0A6YWV4 Amigo2-201ENSMUST00000053106 2871 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Trbc1A0A0A6YWV4 Galnt18-201ENSMUST00000049430 2575 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
Trbc1A0A0A6YWV4 Zfp746-201ENSMUST00000073124 3651 ntAPPRIS P3 TSL 1 (best) BASIC15.46■□□□□ 0.07
Trbc1A0A0A6YWV4 Adsl-204ENSMUST00000164806 1595 ntTSL 5 BASIC15.46■□□□□ 0.07
Trbc1A0A0A6YWV4 Pdlim5-211ENSMUST00000198381 1555 ntAPPRIS ALT2 TSL 5 BASIC15.46■□□□□ 0.07
Trbc1A0A0A6YWV4 Cntln-201ENSMUST00000047023 5528 ntAPPRIS ALT2 TSL 5 BASIC15.46■□□□□ 0.07
Trbc1A0A0A6YWV4 Fhl1-203ENSMUST00000114769 2770 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
Trbc1A0A0A6YWV4 Fam229a-201ENSMUST00000106043 558 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Trbc1A0A0A6YWV4 1810062O18Rik-202ENSMUST00000128848 745 ntTSL 3 BASIC15.46■□□□□ 0.07
Trbc1A0A0A6YWV4 Gm14453-201ENSMUST00000139677 553 ntTSL 3 BASIC15.46■□□□□ 0.07
Trbc1A0A0A6YWV4 Gm29994-201ENSMUST00000195495 1193 ntBASIC15.46■□□□□ 0.07
Trbc1A0A0A6YWV4 Antxr2-202ENSMUST00000199088 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
Trbc1A0A0A6YWV4 Aste1-202ENSMUST00000123807 2349 ntAPPRIS ALT2 TSL 2 BASIC15.46■□□□□ 0.07
Trbc1A0A0A6YWV4 Klf3-201ENSMUST00000165536 5221 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Trbc1A0A0A6YWV4 Ep300-201ENSMUST00000068387 9566 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Retrieved 100 of 76,532 protein–RNA pairs in 29.7 ms