Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Gm23166-201ENSMUST00000157164 101 ntBASIC-0.48□□□□□ -2.49
Col28a1Q2UY11 Gm21830-201ENSMUST00000178898 135 ntAPPRIS P1 TSL 5 BASIC-0.48□□□□□ -2.49
Col28a1Q2UY11 Mir6961-201ENSMUST00000183874 67 ntBASIC-0.48□□□□□ -2.49
Col28a1Q2UY11 AC154832.1-201ENSMUST00000228928 141 ntBASIC-0.48□□□□□ -2.49
Col28a1Q2UY11 Gm25429-201ENSMUST00000157607 132 ntBASIC-0.49□□□□□ -2.49
Col28a1Q2UY11 Gm25886-201ENSMUST00000157780 114 ntBASIC-0.49□□□□□ -2.49
Col28a1Q2UY11 Gm26233-201ENSMUST00000175530 70 ntBASIC-0.49□□□□□ -2.49
Col28a1Q2UY11 Gm25493-201ENSMUST00000157375 103 ntBASIC-0.5□□□□□ -2.49
Col28a1Q2UY11 Gm23216-201ENSMUST00000179545 107 ntBASIC-0.5□□□□□ -2.49
Col28a1Q2UY11 Mir302c-201ENSMUST00000083548 68 ntBASIC-0.5□□□□□ -2.49
Col28a1Q2UY11 Gm23315-201ENSMUST00000158003 109 ntBASIC-0.51□□□□□ -2.49
Col28a1Q2UY11 Gm24091-201ENSMUST00000082550 83 ntBASIC-0.51□□□□□ -2.49
Col28a1Q2UY11 Gm23711-201ENSMUST00000083856 83 ntBASIC-0.51□□□□□ -2.49
Col28a1Q2UY11 Gm22232-201ENSMUST00000104654 94 ntBASIC-0.52□□□□□ -2.49
Col28a1Q2UY11 Mirlet7a-2-201ENSMUST00000175029 96 ntBASIC-0.52□□□□□ -2.49
Col28a1Q2UY11 Mir6964-201ENSMUST00000200252 59 ntBASIC-0.52□□□□□ -2.49
Col28a1Q2UY11 Mir466m-201ENSMUST00000175052 84 ntBASIC-0.53□□□□□ -2.49
Col28a1Q2UY11 Gm24108-201ENSMUST00000175495 77 ntBASIC-0.53□□□□□ -2.49
Col28a1Q2UY11 Gm26043-201ENSMUST00000116912 91 ntBASIC-0.54□□□□□ -2.5
Col28a1Q2UY11 Gm23199-201ENSMUST00000158812 107 ntBASIC-0.54□□□□□ -2.5
Col28a1Q2UY11 Gm24197-201ENSMUST00000175085 109 ntBASIC-0.54□□□□□ -2.5
Col28a1Q2UY11 Gm24194-201ENSMUST00000116805 90 ntBASIC-0.55□□□□□ -2.5
Col28a1Q2UY11 Gm24646-201ENSMUST00000157109 99 ntBASIC-0.55□□□□□ -2.5
Col28a1Q2UY11 Gm24775-201ENSMUST00000157377 99 ntBASIC-0.55□□□□□ -2.5
Col28a1Q2UY11 Mir7055-201ENSMUST00000197423 59 ntBASIC-0.55□□□□□ -2.5
Col28a1Q2UY11 Mir192-201ENSMUST00000083589 89 ntBASIC-0.55□□□□□ -2.5
Col28a1Q2UY11 Gm26472-201ENSMUST00000116760 83 ntBASIC-0.56□□□□□ -2.5
Col28a1Q2UY11 Gm24051-201ENSMUST00000158622 75 ntBASIC-0.56□□□□□ -2.5
Col28a1Q2UY11 Gm23613-201ENSMUST00000082596 87 ntBASIC-0.56□□□□□ -2.5
Col28a1Q2UY11 Mir6339-201ENSMUST00000185120 117 ntBASIC-0.57□□□□□ -2.5
Col28a1Q2UY11 Gm24502-201ENSMUST00000158453 105 ntBASIC-0.59□□□□□ -2.5
Col28a1Q2UY11 Gm25143-201ENSMUST00000082696 109 ntBASIC-0.59□□□□□ -2.5
Col28a1Q2UY11 Snord123-201ENSMUST00000158692 71 ntBASIC-0.6□□□□□ -2.51
Col28a1Q2UY11 Mir7086-201ENSMUST00000183683 65 ntBASIC-0.61□□□□□ -2.51
Col28a1Q2UY11 Gm43943-201ENSMUST00000204201 113 ntBASIC-0.61□□□□□ -2.51
Col28a1Q2UY11 Snord58b-201ENSMUST00000082937 66 ntBASIC-0.61□□□□□ -2.51
Col28a1Q2UY11 n-R5s153-201ENSMUST00000083451 116 ntBASIC-0.62□□□□□ -2.51
Col28a1Q2UY11 Gm24047-201ENSMUST00000102405 104 ntBASIC-0.63□□□□□ -2.51
Col28a1Q2UY11 Gm23974-201ENSMUST00000083321 131 ntBASIC-0.63□□□□□ -2.51
Col28a1Q2UY11 Gm24554-201ENSMUST00000158654 73 ntBASIC-0.64□□□□□ -2.51
Col28a1Q2UY11 Gm22446-201ENSMUST00000180108 104 ntBASIC-0.64□□□□□ -2.51
Col28a1Q2UY11 Gm26125-201ENSMUST00000083357 107 ntBASIC-0.64□□□□□ -2.51
Col28a1Q2UY11 Gm22925-201ENSMUST00000174956 102 ntBASIC-0.65□□□□□ -2.51
Col28a1Q2UY11 Mir7015-201ENSMUST00000199525 64 ntBASIC-0.65□□□□□ -2.51
Col28a1Q2UY11 Mir539-201ENSMUST00000102109 74 ntBASIC-0.66□□□□□ -2.52
Col28a1Q2UY11 Mir669m-2-201ENSMUST00000158355 98 ntBASIC-0.67□□□□□ -2.52
Col28a1Q2UY11 Gm20473-201ENSMUST00000173064 112 ntBASIC-0.67□□□□□ -2.52
Col28a1Q2UY11 Gm25601-201ENSMUST00000158356 105 ntBASIC-0.68□□□□□ -2.52
Col28a1Q2UY11 Gm17522-202ENSMUST00000186631 174 ntTSL 1 (best) BASIC-0.69□□□□□ -2.52
Col28a1Q2UY11 Gm17412-202ENSMUST00000189566 174 ntTSL 1 (best) BASIC-0.69□□□□□ -2.52
Col28a1Q2UY11 Gm26124-201ENSMUST00000083359 108 ntBASIC-0.69□□□□□ -2.52
Col28a1Q2UY11 Gm22593-201ENSMUST00000104245 109 ntBASIC-0.7□□□□□ -2.52
Col28a1Q2UY11 Gm22313-201ENSMUST00000158008 129 ntBASIC-0.71□□□□□ -2.52
Col28a1Q2UY11 Gm27935-201ENSMUST00000183894 79 ntBASIC-0.71□□□□□ -2.52
Col28a1Q2UY11 Mir543-201ENSMUST00000102286 76 ntBASIC-0.73□□□□□ -2.53
Col28a1Q2UY11 Gm27366-201ENSMUST00000184967 108 ntBASIC-0.73□□□□□ -2.53
Col28a1Q2UY11 Gm23556-201ENSMUST00000157821 92 ntBASIC-0.75□□□□□ -2.53
Col28a1Q2UY11 Gm25626-201ENSMUST00000177631 107 ntBASIC-0.75□□□□□ -2.53
Col28a1Q2UY11 Mir451b-201ENSMUST00000196157 72 ntBASIC-0.75□□□□□ -2.53
Col28a1Q2UY11 Traj33-201ENSMUST00000103708 57 ntAPPRIS P1 BASIC-0.77□□□□□ -2.53
Col28a1Q2UY11 Gm23543-201ENSMUST00000158207 106 ntBASIC-0.77□□□□□ -2.53
Col28a1Q2UY11 Mir7218-201ENSMUST00000200050 59 ntBASIC-0.77□□□□□ -2.53
Col28a1Q2UY11 Gm22430-201ENSMUST00000158546 107 ntBASIC-0.78□□□□□ -2.53
Col28a1Q2UY11 Gm44303-201ENSMUST00000196348 83 ntBASIC-0.78□□□□□ -2.53
Col28a1Q2UY11 Gm22385-201ENSMUST00000158189 101 ntBASIC-0.79□□□□□ -2.54
Col28a1Q2UY11 Gm23421-201ENSMUST00000158934 104 ntBASIC-0.79□□□□□ -2.54
Col28a1Q2UY11 Gm22783-201ENSMUST00000104089 107 ntBASIC-0.8□□□□□ -2.54
Col28a1Q2UY11 Gm23316-201ENSMUST00000157997 114 ntBASIC-0.8□□□□□ -2.54
Col28a1Q2UY11 Traj29-201ENSMUST00000103712 60 ntAPPRIS P1 BASIC-0.82□□□□□ -2.54
Col28a1Q2UY11 Gm24387-201ENSMUST00000104625 90 ntBASIC-0.82□□□□□ -2.54
Col28a1Q2UY11 Gm22464-201ENSMUST00000175273 64 ntBASIC-0.82□□□□□ -2.54
Col28a1Q2UY11 Gm23751-201ENSMUST00000157583 136 ntBASIC-0.83□□□□□ -2.54
Col28a1Q2UY11 Gm23335-201ENSMUST00000117021 90 ntBASIC-0.84□□□□□ -2.54
Col28a1Q2UY11 Mir7681-201ENSMUST00000184834 72 ntBASIC-0.85□□□□□ -2.55
Col28a1Q2UY11 Mir122-201ENSMUST00000083468 66 ntBASIC-0.85□□□□□ -2.55
Col28a1Q2UY11 Gm44377-201ENSMUST00000199039 87 ntBASIC-0.86□□□□□ -2.55
Col28a1Q2UY11 Gm22573-201ENSMUST00000082982 102 ntBASIC-0.86□□□□□ -2.55
Col28a1Q2UY11 Mir664-201ENSMUST00000196796 69 ntBASIC-0.88□□□□□ -2.55
Col28a1Q2UY11 Gm25049-201ENSMUST00000158597 73 ntBASIC-0.9□□□□□ -2.55
Col28a1Q2UY11 Gm22566-201ENSMUST00000175541 85 ntBASIC-0.91□□□□□ -2.56
Col28a1Q2UY11 Gm44351-201ENSMUST00000200090 95 ntBASIC-0.92□□□□□ -2.56
Col28a1Q2UY11 Gm23637-201ENSMUST00000175075 94 ntBASIC-0.93□□□□□ -2.56
Col28a1Q2UY11 Gm25905-201ENSMUST00000158490 101 ntBASIC-0.98□□□□□ -2.57
Col28a1Q2UY11 Gm23566-201ENSMUST00000174907 108 ntBASIC-0.98□□□□□ -2.57
Col28a1Q2UY11 Gm22183-201ENSMUST00000175420 73 ntBASIC-0.99□□□□□ -2.57
Col28a1Q2UY11 Mir379-201ENSMUST00000083564 66 ntBASIC-0.99□□□□□ -2.57
Col28a1Q2UY11 Mir335-201ENSMUST00000083567 98 ntBASIC-1□□□□□ -2.57
Col28a1Q2UY11 Gm24538-201ENSMUST00000082612 107 ntBASIC-1.03□□□□□ -2.57
Col28a1Q2UY11 Mir351-201ENSMUST00000083569 99 ntBASIC-1.06□□□□□ -2.58
Col28a1Q2UY11 Mir485-201ENSMUST00000093620 73 ntBASIC-1.06□□□□□ -2.58
Col28a1Q2UY11 Mir466o-201ENSMUST00000104832 84 ntBASIC-1.07□□□□□ -2.58
Col28a1Q2UY11 Mir467e-201ENSMUST00000103760 87 ntBASIC-1.09□□□□□ -2.58
Col28a1Q2UY11 Gm22296-201ENSMUST00000083310 103 ntBASIC-1.09□□□□□ -2.58
Col28a1Q2UY11 Gm24806-201ENSMUST00000117036 90 ntBASIC-1.1□□□□□ -2.59
Col28a1Q2UY11 Mir1912-201ENSMUST00000175298 87 ntBASIC-1.1□□□□□ -2.59
Col28a1Q2UY11 Mir470-201ENSMUST00000093565 75 ntBASIC-1.1□□□□□ -2.59
Col28a1Q2UY11 Gm23428-201ENSMUST00000122488 102 ntBASIC-1.11□□□□□ -2.59
Col28a1Q2UY11 Gm25297-201ENSMUST00000175490 67 ntBASIC-1.12□□□□□ -2.59
Col28a1Q2UY11 Gm26122-201ENSMUST00000083362 82 ntBASIC-1.14□□□□□ -2.59
Col28a1Q2UY11 Mir466b-2-201ENSMUST00000103778 82 ntBASIC-1.15□□□□□ -2.59
Retrieved 100 of 76,532 protein–RNA pairs in 80.7 ms