Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Mir1949-202ENSMUST00000199259 70 ntBASIC0.86□□□□□ -2.27
Col28a1Q2UY11 n-R5s96-201ENSMUST00000082574 124 ntBASIC0.86□□□□□ -2.27
Col28a1Q2UY11 Gm25756-201ENSMUST00000103990 136 ntBASIC0.85□□□□□ -2.27
Col28a1Q2UY11 Gm25847-201ENSMUST00000116793 96 ntBASIC0.85□□□□□ -2.27
Col28a1Q2UY11 Gm13065-201ENSMUST00000119178 141 ntBASIC0.85□□□□□ -2.27
Col28a1Q2UY11 Gm23826-201ENSMUST00000157394 119 ntBASIC0.85□□□□□ -2.27
Col28a1Q2UY11 Gm23500-201ENSMUST00000157735 98 ntBASIC0.85□□□□□ -2.27
Col28a1Q2UY11 Gm23853-201ENSMUST00000158375 104 ntBASIC0.85□□□□□ -2.27
Col28a1Q2UY11 Scarna3a-201ENSMUST00000158911 140 ntBASIC0.85□□□□□ -2.27
Col28a1Q2UY11 Gm23008-201ENSMUST00000158946 80 ntBASIC0.85□□□□□ -2.27
Col28a1Q2UY11 Gm24918-201ENSMUST00000083022 130 ntBASIC0.85□□□□□ -2.27
Col28a1Q2UY11 Gm25128-201ENSMUST00000083339 76 ntBASIC0.85□□□□□ -2.27
Col28a1Q2UY11 Gm22689-201ENSMUST00000102452 110 ntBASIC0.84□□□□□ -2.27
Col28a1Q2UY11 Gm25787-201ENSMUST00000104709 92 ntBASIC0.84□□□□□ -2.27
Col28a1Q2UY11 Gm23989-201ENSMUST00000117030 66 ntBASIC0.84□□□□□ -2.27
Col28a1Q2UY11 Gm24500-201ENSMUST00000158447 124 ntBASIC0.84□□□□□ -2.27
Col28a1Q2UY11 Gm23726-201ENSMUST00000178937 67 ntBASIC0.84□□□□□ -2.27
Col28a1Q2UY11 Gm27717-201ENSMUST00000183933 151 ntBASIC0.84□□□□□ -2.27
Col28a1Q2UY11 Gm22652-201ENSMUST00000083207 131 ntBASIC0.84□□□□□ -2.27
Col28a1Q2UY11 Gm24134-201ENSMUST00000083361 71 ntBASIC0.84□□□□□ -2.27
Col28a1Q2UY11 Gm26485-201ENSMUST00000158019 64 ntBASIC0.83□□□□□ -2.28
Col28a1Q2UY11 Gm42533-201ENSMUST00000196247 157 ntBASIC0.83□□□□□ -2.28
Col28a1Q2UY11 Mir126a-201ENSMUST00000083606 73 ntBASIC0.83□□□□□ -2.28
Col28a1Q2UY11 Gm5581-201ENSMUST00000072940 2550 ntBASIC0.83□□□□□ -2.28
Col28a1Q2UY11 Gm24431-201ENSMUST00000104073 66 ntBASIC0.82□□□□□ -2.28
Col28a1Q2UY11 Gm24233-201ENSMUST00000104317 122 ntBASIC0.82□□□□□ -2.28
Col28a1Q2UY11 Gm23708-201ENSMUST00000104367 123 ntBASIC0.82□□□□□ -2.28
Col28a1Q2UY11 Gm23785-201ENSMUST00000116741 96 ntBASIC0.82□□□□□ -2.28
Col28a1Q2UY11 Gm23416-201ENSMUST00000175520 95 ntBASIC0.82□□□□□ -2.28
Col28a1Q2UY11 Gm25354-201ENSMUST00000179110 105 ntBASIC0.82□□□□□ -2.28
Col28a1Q2UY11 Mir741-201ENSMUST00000103931 71 ntBASIC0.81□□□□□ -2.28
Col28a1Q2UY11 Gm11966-201ENSMUST00000119907 87 ntBASIC0.81□□□□□ -2.28
Col28a1Q2UY11 Gm24378-201ENSMUST00000122699 106 ntBASIC0.81□□□□□ -2.28
Col28a1Q2UY11 Gm25328-201ENSMUST00000175013 107 ntBASIC0.81□□□□□ -2.28
Col28a1Q2UY11 Gm25950-201ENSMUST00000175331 100 ntBASIC0.81□□□□□ -2.28
Col28a1Q2UY11 Gm44211-201ENSMUST00000204867 145 ntBASIC0.81□□□□□ -2.28
Col28a1Q2UY11 AC156794.1-201ENSMUST00000214415 214 ntTSL 5 BASIC0.81□□□□□ -2.28
Col28a1Q2UY11 Zfp654-201ENSMUST00000052588 4741 ntAPPRIS P3 TSL 1 (best) BASIC0.81□□□□□ -2.28
Col28a1Q2UY11 Traj34-201ENSMUST00000103707 58 ntAPPRIS P1 BASIC0.8□□□□□ -2.28
Col28a1Q2UY11 Gm23012-201ENSMUST00000104149 83 ntBASIC0.8□□□□□ -2.28
Col28a1Q2UY11 Gm11111-201ENSMUST00000112956 99 ntAPPRIS P1 TSL 5 BASIC0.8□□□□□ -2.28
Col28a1Q2UY11 Gm13577-201ENSMUST00000121365 205 ntBASIC0.8□□□□□ -2.28
Col28a1Q2UY11 Gm22520-201ENSMUST00000158269 129 ntBASIC0.8□□□□□ -2.28
Col28a1Q2UY11 Mir15a-201ENSMUST00000175266 84 ntBASIC0.8□□□□□ -2.28
Col28a1Q2UY11 Gm25300-201ENSMUST00000175284 84 ntBASIC0.8□□□□□ -2.28
Col28a1Q2UY11 Gm24580-201ENSMUST00000103965 131 ntBASIC0.79□□□□□ -2.28
Col28a1Q2UY11 Mir3064-201ENSMUST00000175532 67 ntBASIC0.79□□□□□ -2.28
Col28a1Q2UY11 Gm27549-201ENSMUST00000183508 62 ntBASIC0.79□□□□□ -2.28
Col28a1Q2UY11 Gm27587-201ENSMUST00000185116 163 ntBASIC0.79□□□□□ -2.28
Col28a1Q2UY11 Gm29432-201ENSMUST00000185397 139 ntBASIC0.79□□□□□ -2.28
Col28a1Q2UY11 Mir219b-201ENSMUST00000198317 65 ntBASIC0.79□□□□□ -2.28
Col28a1Q2UY11 Gm25138-201ENSMUST00000083248 136 ntBASIC0.79□□□□□ -2.28
Col28a1Q2UY11 Vmn1r75-202ENSMUST00000226622 6638 ntAPPRIS P2 BASIC0.79□□□□□ -2.28
Col28a1Q2UY11 Gm24579-201ENSMUST00000103964 144 ntBASIC0.78□□□□□ -2.28
Col28a1Q2UY11 Gm23783-201ENSMUST00000157941 102 ntBASIC0.78□□□□□ -2.28
Col28a1Q2UY11 Gm23477-201ENSMUST00000158882 128 ntBASIC0.78□□□□□ -2.28
Col28a1Q2UY11 Mir3108-201ENSMUST00000175500 79 ntBASIC0.78□□□□□ -2.28
Col28a1Q2UY11 Gm27974-201ENSMUST00000183415 105 ntBASIC0.78□□□□□ -2.28
Col28a1Q2UY11 Mir7010-201ENSMUST00000183464 63 ntBASIC0.78□□□□□ -2.28
Col28a1Q2UY11 Gm44301-201ENSMUST00000200362 143 ntBASIC0.78□□□□□ -2.28
Col28a1Q2UY11 n-R5s6-201ENSMUST00000122663 88 ntBASIC0.77□□□□□ -2.29
Col28a1Q2UY11 Mir3070a-201ENSMUST00000175468 89 ntBASIC0.77□□□□□ -2.29
Col28a1Q2UY11 Snord95-201ENSMUST00000082846 68 ntBASIC0.77□□□□□ -2.29
Col28a1Q2UY11 Traj53-201ENSMUST00000103690 66 ntAPPRIS P1 BASIC0.76□□□□□ -2.29
Col28a1Q2UY11 Mir669h-201ENSMUST00000116944 125 ntBASIC0.76□□□□□ -2.29
Col28a1Q2UY11 Gm21836-201ENSMUST00000178787 63 ntAPPRIS P1 BASIC0.76□□□□□ -2.29
Col28a1Q2UY11 Mir7079-201ENSMUST00000184697 69 ntBASIC0.76□□□□□ -2.29
Col28a1Q2UY11 Gm45655-201ENSMUST00000211625 160 ntBASIC0.76□□□□□ -2.29
Col28a1Q2UY11 Snord35a-201ENSMUST00000083884 90 ntBASIC0.76□□□□□ -2.29
Col28a1Q2UY11 Gm24288-201ENSMUST00000157630 144 ntBASIC0.75□□□□□ -2.29
Col28a1Q2UY11 Gm25161-201ENSMUST00000158913 132 ntBASIC0.75□□□□□ -2.29
Col28a1Q2UY11 Gm26438-201ENSMUST00000082593 107 ntBASIC0.75□□□□□ -2.29
Col28a1Q2UY11 Gm23321-201ENSMUST00000104465 126 ntBASIC0.74□□□□□ -2.29
Col28a1Q2UY11 Gm23735-201ENSMUST00000082551 134 ntBASIC0.74□□□□□ -2.29
Col28a1Q2UY11 Gm24920-201ENSMUST00000083018 85 ntBASIC0.74□□□□□ -2.29
Col28a1Q2UY11 Mir101a-201ENSMUST00000083517 83 ntBASIC0.74□□□□□ -2.29
Col28a1Q2UY11 Gm382-201ENSMUST00000096332 4070 ntAPPRIS P1 TSL 1 (best) BASIC0.74□□□□□ -2.29
Col28a1Q2UY11 Gm23126-201ENSMUST00000104260 134 ntBASIC0.73□□□□□ -2.29
Col28a1Q2UY11 Gm22048-201ENSMUST00000104721 89 ntBASIC0.73□□□□□ -2.29
Col28a1Q2UY11 Gm22431-201ENSMUST00000158545 107 ntBASIC0.72□□□□□ -2.29
Col28a1Q2UY11 Gm25894-201ENSMUST00000083458 75 ntBASIC0.72□□□□□ -2.29
Col28a1Q2UY11 Mir33-201ENSMUST00000083531 69 ntBASIC0.72□□□□□ -2.29
Col28a1Q2UY11 n-R5s12-201ENSMUST00000083785 119 ntBASIC0.72□□□□□ -2.29
Col28a1Q2UY11 Mir876-201ENSMUST00000104659 81 ntBASIC0.71□□□□□ -2.3
Col28a1Q2UY11 Gm23856-201ENSMUST00000158380 99 ntBASIC0.71□□□□□ -2.3
Col28a1Q2UY11 Gm25656-201ENSMUST00000158466 66 ntBASIC0.71□□□□□ -2.3
Col28a1Q2UY11 Gm24331-201ENSMUST00000175099 67 ntBASIC0.71□□□□□ -2.3
Col28a1Q2UY11 Gm24321-201ENSMUST00000175348 80 ntBASIC0.71□□□□□ -2.3
Col28a1Q2UY11 Gm23801-201ENSMUST00000175561 67 ntBASIC0.71□□□□□ -2.3
Col28a1Q2UY11 Gm24485-201ENSMUST00000178283 67 ntBASIC0.71□□□□□ -2.3
Col28a1Q2UY11 Gm27554-201ENSMUST00000185074 98 ntBASIC0.71□□□□□ -2.3
Col28a1Q2UY11 Gm38113-201ENSMUST00000193704 201 ntBASIC0.71□□□□□ -2.3
Col28a1Q2UY11 Gm42677-201ENSMUST00000196363 127 ntBASIC0.71□□□□□ -2.3
Col28a1Q2UY11 Svbp-204ENSMUST00000210595 150 ntTSL 5 BASIC0.71□□□□□ -2.3
Col28a1Q2UY11 DQ267101-201ENSMUST00000082562 73 ntBASIC0.71□□□□□ -2.3
Col28a1Q2UY11 Gm14533-201ENSMUST00000117088 93 ntBASIC0.7□□□□□ -2.3
Col28a1Q2UY11 Gm25055-201ENSMUST00000157369 76 ntBASIC0.7□□□□□ -2.3
Col28a1Q2UY11 Gm24323-201ENSMUST00000175342 77 ntBASIC0.7□□□□□ -2.3
Col28a1Q2UY11 Trgj1-201ENSMUST00000200495 60 ntAPPRIS P1 BASIC0.7□□□□□ -2.3
Col28a1Q2UY11 Snord45b-201ENSMUST00000082797 71 ntBASIC0.7□□□□□ -2.3
Retrieved 100 of 76,532 protein–RNA pairs in 135.3 ms