Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Spsb2-203ENSMUST00000112473 1322 ntBASIC17.33■□□□□ 0.36
Vps28Q9D1C8 Lamtor5-202ENSMUST00000199317 743 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Vps28Q9D1C8 Gm18101-201ENSMUST00000215769 548 ntBASIC17.33■□□□□ 0.36
Vps28Q9D1C8 Dhx32-203ENSMUST00000106139 2233 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Vps28Q9D1C8 Rasl10b-204ENSMUST00000175848 3249 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Vps28Q9D1C8 Ift74-201ENSMUST00000030311 2139 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
Vps28Q9D1C8 Rps6ka1-202ENSMUST00000105894 3135 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Vps28Q9D1C8 Cadps2-212ENSMUST00000163871 4969 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
Vps28Q9D1C8 Cacna1a-201ENSMUST00000121390 7926 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
Vps28Q9D1C8 Ryr2-203ENSMUST00000220597 4924 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Vps28Q9D1C8 Casp9-201ENSMUST00000030747 3897 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Vps28Q9D1C8 Snx30-201ENSMUST00000030080 7314 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Vps28Q9D1C8 Trim45-202ENSMUST00000094048 1815 ntTSL 5 BASIC17.33■□□□□ 0.36
Vps28Q9D1C8 Cmtm4-201ENSMUST00000179802 7734 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Vps28Q9D1C8 Sim1-202ENSMUST00000219436 1687 ntTSL 5 BASIC17.32■□□□□ 0.36
Vps28Q9D1C8 Gm5414-201ENSMUST00000062879 1659 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
Vps28Q9D1C8 Gm26774-201ENSMUST00000181534 2401 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Vps28Q9D1C8 Lin9-203ENSMUST00000192561 3160 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Vps28Q9D1C8 Eif2b5-201ENSMUST00000003320 3186 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Vps28Q9D1C8 Smad1-202ENSMUST00000066091 3099 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Vps28Q9D1C8 Itpripl2-201ENSMUST00000178344 6865 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
Vps28Q9D1C8 Tmem94-202ENSMUST00000103033 5238 ntAPPRIS P2 TSL 2 BASIC17.32■□□□□ 0.36
Vps28Q9D1C8 Gm10013-201ENSMUST00000106074 672 ntBASIC17.32■□□□□ 0.36
Vps28Q9D1C8 Gm22697-201ENSMUST00000175194 63 ntBASIC17.32■□□□□ 0.36
Vps28Q9D1C8 4930544D05Rik-204ENSMUST00000180052 755 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
Vps28Q9D1C8 Grtp1-204ENSMUST00000209691 1030 ntTSL 5 BASIC17.32■□□□□ 0.36
Vps28Q9D1C8 Gm18032-201ENSMUST00000222541 538 ntBASIC17.32■□□□□ 0.36
Vps28Q9D1C8 Rpl39l-201ENSMUST00000044103 805 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Vps28Q9D1C8 Col11a2-203ENSMUST00000114255 5722 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
Vps28Q9D1C8 Ddx19a-201ENSMUST00000040416 2547 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Vps28Q9D1C8 Prodh-201ENSMUST00000003620 2385 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Vps28Q9D1C8 Irf3-213ENSMUST00000209066 1712 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Vps28Q9D1C8 Mmd-202ENSMUST00000107887 1654 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Vps28Q9D1C8 Taf6l-205ENSMUST00000176496 2224 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Vps28Q9D1C8 Mtg2-202ENSMUST00000108901 1444 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
Vps28Q9D1C8 Gm7854-202ENSMUST00000187409 1433 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Vps28Q9D1C8 Donson-201ENSMUST00000023682 2360 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Vps28Q9D1C8 Zbtb24-201ENSMUST00000080771 2844 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Vps28Q9D1C8 Dbndd2-201ENSMUST00000017878 1338 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
Vps28Q9D1C8 Pigw-202ENSMUST00000108080 1728 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Vps28Q9D1C8 Smim1-205ENSMUST00000131325 842 ntTSL 5 BASIC17.31■□□□□ 0.36
Vps28Q9D1C8 Cldn18-203ENSMUST00000131922 860 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Vps28Q9D1C8 Cdc34-202ENSMUST00000166603 1078 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Vps28Q9D1C8 Hist1h2br-203ENSMUST00000180288 1256 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Vps28Q9D1C8 Mrpl28-201ENSMUST00000025014 1048 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Vps28Q9D1C8 Hist1h2bq-202ENSMUST00000091749 1254 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Vps28Q9D1C8 Gm7292-201ENSMUST00000194706 2527 ntBASIC17.31■□□□□ 0.36
Vps28Q9D1C8 Plxnd1-201ENSMUST00000015511 6907 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Vps28Q9D1C8 9330160F10Rik-201ENSMUST00000101007 2766 ntBASIC17.31■□□□□ 0.36
Vps28Q9D1C8 Ttc39a-201ENSMUST00000064129 2356 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
Vps28Q9D1C8 Adsl-204ENSMUST00000164806 1595 ntTSL 5 BASIC17.31■□□□□ 0.36
Vps28Q9D1C8 Dtnbp1-203ENSMUST00000220555 1589 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
Vps28Q9D1C8 Shank3-203ENSMUST00000109309 7365 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Vps28Q9D1C8 Usp21-202ENSMUST00000111305 2278 ntAPPRIS P2 TSL 5 BASIC17.31■□□□□ 0.36
Vps28Q9D1C8 Tm7sf2-201ENSMUST00000025713 1471 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Vps28Q9D1C8 Spout1-201ENSMUST00000100220 1805 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Vps28Q9D1C8 Sept10-203ENSMUST00000220156 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Vps28Q9D1C8 Sh3bp1-201ENSMUST00000001226 2510 ntTSL 5 BASIC17.3■□□□□ 0.36
Vps28Q9D1C8 Cpd-201ENSMUST00000021201 7946 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Vps28Q9D1C8 Ociad2-202ENSMUST00000200776 2359 ntTSL 3 BASIC17.3■□□□□ 0.36
Vps28Q9D1C8 Mark3-202ENSMUST00000084953 3365 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Vps28Q9D1C8 Smim3-201ENSMUST00000042710 1984 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Vps28Q9D1C8 Sgta-201ENSMUST00000005067 1969 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Vps28Q9D1C8 Sarm1-202ENSMUST00000108287 4868 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Vps28Q9D1C8 Ric3-202ENSMUST00000120876 1633 ntAPPRIS ALT1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Vps28Q9D1C8 Lrp5-201ENSMUST00000025856 5161 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Vps28Q9D1C8 Amigo2-201ENSMUST00000053106 2871 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Vps28Q9D1C8 Arnt-204ENSMUST00000107160 783 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Vps28Q9D1C8 Arrdc4-202ENSMUST00000118110 1129 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Vps28Q9D1C8 Bola2-203ENSMUST00000130498 1266 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Vps28Q9D1C8 Ccdc125-202ENSMUST00000170347 1216 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Vps28Q9D1C8 Cldn22-201ENSMUST00000038693 995 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
Vps28Q9D1C8 Hmgb3-202ENSMUST00000072699 1571 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Vps28Q9D1C8 Fxr1-201ENSMUST00000001620 2459 ntTSL 5 BASIC17.3■□□□□ 0.36
Vps28Q9D1C8 Apba3-201ENSMUST00000057798 2106 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Vps28Q9D1C8 Avl9-201ENSMUST00000031805 6670 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Vps28Q9D1C8 Smpdl3b-201ENSMUST00000030709 2006 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Vps28Q9D1C8 Ccdc17-201ENSMUST00000051869 2003 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Vps28Q9D1C8 Alcam-201ENSMUST00000023312 6036 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Vps28Q9D1C8 Krt6a-201ENSMUST00000023788 2256 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Vps28Q9D1C8 Tcf7l2-203ENSMUST00000111646 2839 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Vps28Q9D1C8 Mfsd10-202ENSMUST00000114329 1906 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Vps28Q9D1C8 Fbxo22-201ENSMUST00000034859 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Vps28Q9D1C8 Jade1-202ENSMUST00000163764 5584 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Vps28Q9D1C8 Praf2-201ENSMUST00000033489 1339 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Vps28Q9D1C8 Lzts2-201ENSMUST00000039016 2825 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Vps28Q9D1C8 AA467197-202ENSMUST00000110512 751 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Vps28Q9D1C8 Cyp4f41-ps-201ENSMUST00000126790 1077 ntBASIC17.29■□□□□ 0.36
Vps28Q9D1C8 Gm7213-201ENSMUST00000215977 950 ntBASIC17.29■□□□□ 0.36
Vps28Q9D1C8 Wnt10b-207ENSMUST00000228594 1510 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
Vps28Q9D1C8 Cdh2-201ENSMUST00000025166 4843 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Vps28Q9D1C8 Dusp9-201ENSMUST00000019701 2722 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Vps28Q9D1C8 Smim10l1-201ENSMUST00000100864 2842 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
Vps28Q9D1C8 Prmt2-202ENSMUST00000099571 2052 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
Vps28Q9D1C8 Ptpa-202ENSMUST00000113601 1838 ntTSL 5 BASIC17.28■□□□□ 0.36
Vps28Q9D1C8 Fam129c-208ENSMUST00000143662 2267 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
Vps28Q9D1C8 Zrsr2-202ENSMUST00000112289 2735 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
Vps28Q9D1C8 Ptpdc1-204ENSMUST00000222028 3164 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Vps28Q9D1C8 2010016I18Rik-204ENSMUST00000190356 1562 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Vps28Q9D1C8 Dnlz-201ENSMUST00000028295 2916 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Retrieved 100 of 76,532 protein–RNA pairs in 251.9 ms