Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Ebf3-204ENSMUST00000169486 4994 ntAPPRIS ALT1 TSL 5 BASIC20.42■□□□□ 0.86
Brf1Q8CFK2 Wnt10b-204ENSMUST00000226655 1807 ntBASIC20.41■□□□□ 0.86
Brf1Q8CFK2 Krt81-201ENSMUST00000061185 1857 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Brf1Q8CFK2 Baiap2-204ENSMUST00000106231 4005 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
Brf1Q8CFK2 Hmga1-206ENSMUST00000119486 1003 ntAPPRIS P3 TSL 2 BASIC20.41■□□□□ 0.86
Brf1Q8CFK2 Flg-203ENSMUST00000178695 777 ntAPPRIS P5 BASIC20.41■□□□□ 0.86
Brf1Q8CFK2 Gm3764-209ENSMUST00000181550 1093 ntTSL 3 BASIC20.41■□□□□ 0.86
Brf1Q8CFK2 Pldi-201ENSMUST00000036304 853 ntTSL 2 BASIC20.41■□□□□ 0.86
Brf1Q8CFK2 Tmem163-203ENSMUST00000160616 2657 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
Brf1Q8CFK2 Chd5-202ENSMUST00000030775 9486 ntAPPRIS P3 TSL 5 BASIC20.41■□□□□ 0.86
Brf1Q8CFK2 Gm7854-202ENSMUST00000187409 1433 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Brf1Q8CFK2 Wt1-205ENSMUST00000143043 3090 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
Brf1Q8CFK2 4930448E22Rik-201ENSMUST00000181712 1581 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Brf1Q8CFK2 Lrrfip2-202ENSMUST00000098340 3191 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
Brf1Q8CFK2 Ppp1r3f-205ENSMUST00000150787 4760 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
Brf1Q8CFK2 Pacsin1-202ENSMUST00000097360 1800 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Brf1Q8CFK2 Ino80e-203ENSMUST00000106343 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Brf1Q8CFK2 Glcci1-201ENSMUST00000064285 6200 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
Brf1Q8CFK2 Sytl3-201ENSMUST00000097430 2100 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Brf1Q8CFK2 Cadm1-204ENSMUST00000114548 4482 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Brf1Q8CFK2 Hspa8-201ENSMUST00000015800 2394 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Brf1Q8CFK2 Pid1-201ENSMUST00000168574 2664 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Brf1Q8CFK2 Col13a1-204ENSMUST00000105453 2935 ntTSL 2 BASIC20.4■□□□□ 0.86
Brf1Q8CFK2 Dock9-202ENSMUST00000100299 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
Brf1Q8CFK2 Sec14l1-203ENSMUST00000103026 2589 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
Brf1Q8CFK2 Izumo1r-204ENSMUST00000121116 726 ntTSL 2 BASIC20.4■□□□□ 0.86
Brf1Q8CFK2 Itgb7-201ENSMUST00000001327 2674 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Brf1Q8CFK2 Slc2a8-204ENSMUST00000153484 1168 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
Brf1Q8CFK2 Hmg20b-213ENSMUST00000167481 1321 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
Brf1Q8CFK2 Gm45442-201ENSMUST00000210038 411 ntTSL 3 BASIC20.4■□□□□ 0.86
Brf1Q8CFK2 Psmd6-201ENSMUST00000022256 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Brf1Q8CFK2 Zbtb45-201ENSMUST00000051390 2171 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Brf1Q8CFK2 Pih1d1-201ENSMUST00000085375 1185 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Brf1Q8CFK2 Dlx3-201ENSMUST00000092768 2607 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Brf1Q8CFK2 Nsmf-203ENSMUST00000100334 2957 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
Brf1Q8CFK2 Dok7-202ENSMUST00000101298 2443 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
Brf1Q8CFK2 Mst1-204ENSMUST00000162886 2209 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.86
Brf1Q8CFK2 Lrrc47-205ENSMUST00000169622 3468 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.86
Brf1Q8CFK2 Fosl1-201ENSMUST00000025850 1707 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
Brf1Q8CFK2 Cobll1-205ENSMUST00000112431 5024 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.86
Brf1Q8CFK2 Hmgb3-202ENSMUST00000072699 1571 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Brf1Q8CFK2 Pmepa1-201ENSMUST00000036248 4538 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Brf1Q8CFK2 Rps5-202ENSMUST00000108539 794 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.85
Brf1Q8CFK2 Gm6433-201ENSMUST00000118634 875 ntBASIC20.39■□□□□ 0.85
Brf1Q8CFK2 Gm16061-201ENSMUST00000122167 857 ntBASIC20.39■□□□□ 0.85
Brf1Q8CFK2 Pabpc1l2b-ps-201ENSMUST00000124538 690 ntBASIC20.39■□□□□ 0.85
Brf1Q8CFK2 Snapc3-202ENSMUST00000071544 942 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
Brf1Q8CFK2 Olfr1232-201ENSMUST00000099785 936 ntAPPRIS P1 BASIC20.39■□□□□ 0.85
Brf1Q8CFK2 Agpat3-203ENSMUST00000105388 3681 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.85
Brf1Q8CFK2 Nfatc3-201ENSMUST00000109308 5984 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.85
Brf1Q8CFK2 Cpox-201ENSMUST00000060077 3186 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Brf1Q8CFK2 Agfg1-206ENSMUST00000189220 8044 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.85
Brf1Q8CFK2 Sar1a-201ENSMUST00000020285 2613 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Brf1Q8CFK2 Fbxl3-201ENSMUST00000022720 4309 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Brf1Q8CFK2 Gm20460-201ENSMUST00000168709 1572 ntTSL 5 BASIC20.38■□□□□ 0.85
Brf1Q8CFK2 Mipep-201ENSMUST00000063562 3015 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Brf1Q8CFK2 Tspan9-201ENSMUST00000032503 1405 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Brf1Q8CFK2 Prmt9-202ENSMUST00000118622 2768 ntAPPRIS ALT2 TSL 5 BASIC20.38■□□□□ 0.85
Brf1Q8CFK2 Armc10-202ENSMUST00000095495 2700 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Brf1Q8CFK2 Eefsec-201ENSMUST00000165242 2679 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Brf1Q8CFK2 Tbx3os2-201ENSMUST00000135385 1345 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Brf1Q8CFK2 Rusc1-203ENSMUST00000166687 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
Brf1Q8CFK2 Lamtor5-201ENSMUST00000145735 881 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Brf1Q8CFK2 Gtf3a-204ENSMUST00000146511 1298 ntAPPRIS P5 TSL 1 (best) BASIC20.38■□□□□ 0.85
Brf1Q8CFK2 4932443I19Rik-204ENSMUST00000214337 1212 ntAPPRIS ALT2 TSL 5 BASIC20.38■□□□□ 0.85
Brf1Q8CFK2 Mrpl21-201ENSMUST00000025743 802 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
Brf1Q8CFK2 Mrpl21-202ENSMUST00000025745 1138 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
Brf1Q8CFK2 Celf3-208ENSMUST00000198316 2505 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Brf1Q8CFK2 Cldn4-201ENSMUST00000051401 1816 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
Brf1Q8CFK2 Slc35e3-201ENSMUST00000079041 3489 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Brf1Q8CFK2 Zic1-202ENSMUST00000065360 2811 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Brf1Q8CFK2 Scarf2-201ENSMUST00000012161 3302 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Brf1Q8CFK2 Fmr1-201ENSMUST00000088546 4409 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Brf1Q8CFK2 Dnajc19-201ENSMUST00000011029 2499 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Brf1Q8CFK2 Dhx36-201ENSMUST00000029336 5620 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Brf1Q8CFK2 Dgke-202ENSMUST00000107894 8347 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
Brf1Q8CFK2 Gm8909-201ENSMUST00000040467 1357 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
Brf1Q8CFK2 Spsb2-203ENSMUST00000112473 1322 ntBASIC20.37■□□□□ 0.85
Brf1Q8CFK2 Bdkrb1-202ENSMUST00000182899 1313 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
Brf1Q8CFK2 Bdkrb1-201ENSMUST00000041229 1338 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
Brf1Q8CFK2 Slc25a51-203ENSMUST00000132815 1005 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
Brf1Q8CFK2 Tnnt2-212ENSMUST00000189732 1123 ntAPPRIS ALT2 TSL 5 BASIC20.37■□□□□ 0.85
Brf1Q8CFK2 Fuz-209ENSMUST00000208179 1164 ntTSL 5 BASIC20.37■□□□□ 0.85
Brf1Q8CFK2 Gm18959-201ENSMUST00000208954 655 ntBASIC20.37■□□□□ 0.85
Brf1Q8CFK2 Stk3-201ENSMUST00000018476 2914 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
Brf1Q8CFK2 Klhdc8b-214ENSMUST00000195435 1612 ntTSL 5 BASIC20.37■□□□□ 0.85
Brf1Q8CFK2 Matk-202ENSMUST00000117488 1980 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
Brf1Q8CFK2 Coq8b-202ENSMUST00000108378 2276 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Brf1Q8CFK2 Adat2-201ENSMUST00000019944 1466 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Brf1Q8CFK2 Nmnat3-201ENSMUST00000112935 2166 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Brf1Q8CFK2 F830208F22Rik-202ENSMUST00000143732 2891 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Brf1Q8CFK2 Qprt-201ENSMUST00000032912 2050 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Brf1Q8CFK2 Gm7008-201ENSMUST00000038121 1366 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Brf1Q8CFK2 Cnpy1-202ENSMUST00000118882 1984 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Brf1Q8CFK2 Cdca3-201ENSMUST00000024270 1976 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Brf1Q8CFK2 Gm26526-201ENSMUST00000181075 2927 ntTSL 5 BASIC20.36■□□□□ 0.85
Brf1Q8CFK2 Dtx2-201ENSMUST00000005072 2562 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
Brf1Q8CFK2 Rap2a-201ENSMUST00000062117 4191 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Brf1Q8CFK2 Otud5-202ENSMUST00000115665 3821 ntTSL 5 BASIC20.36■□□□□ 0.85
Brf1Q8CFK2 Mir5130-201ENSMUST00000175160 84 ntBASIC20.36■□□□□ 0.85
Retrieved 100 of 76,532 protein–RNA pairs in 39.5 ms