Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 Tlcd2-202ENSMUST00000108435 1112 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Vps53Q8CCB4 AA414768-201ENSMUST00000121924 1257 ntBASIC19.69■□□□□ 0.74
Vps53Q8CCB4 Prss16-204ENSMUST00000150547 1159 ntTSL 3 BASIC19.69■□□□□ 0.74
Vps53Q8CCB4 Aldh1a3-204ENSMUST00000174215 1066 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Vps53Q8CCB4 4933406B15Rik-201ENSMUST00000220065 1182 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Vps53Q8CCB4 Gfra4-202ENSMUST00000066958 783 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Vps53Q8CCB4 Zfp524-201ENSMUST00000086349 1142 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Vps53Q8CCB4 AC121598.2-201ENSMUST00000228376 2325 ntBASIC19.69■□□□□ 0.74
Vps53Q8CCB4 Pou2f2-201ENSMUST00000098679 2340 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Vps53Q8CCB4 Zic1-202ENSMUST00000065360 2811 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Vps53Q8CCB4 Proca1-203ENSMUST00000108317 1359 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
Vps53Q8CCB4 Apba3-201ENSMUST00000057798 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Vps53Q8CCB4 Kif26a-201ENSMUST00000128402 6918 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Vps53Q8CCB4 Aurkb-201ENSMUST00000021277 1950 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Vps53Q8CCB4 Ddx28-201ENSMUST00000058579 2262 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
Vps53Q8CCB4 Sept8-203ENSMUST00000120878 1806 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
Vps53Q8CCB4 Gm12085-201ENSMUST00000119263 940 ntBASIC19.68■□□□□ 0.74
Vps53Q8CCB4 Tsfm-202ENSMUST00000120547 1271 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Vps53Q8CCB4 Ccdc125-202ENSMUST00000170347 1216 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Vps53Q8CCB4 1700025A08Rik-201ENSMUST00000200753 609 ntBASIC19.68■□□□□ 0.74
Vps53Q8CCB4 Bcl7c-205ENSMUST00000205977 891 ntTSL 2 BASIC19.68■□□□□ 0.74
Vps53Q8CCB4 Cdk2ap2-201ENSMUST00000025779 1080 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Vps53Q8CCB4 Fam167b-201ENSMUST00000052835 913 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Vps53Q8CCB4 Vpreb1-201ENSMUST00000075017 766 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Vps53Q8CCB4 Proc-201ENSMUST00000171765 1566 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
Vps53Q8CCB4 Arhgef11-201ENSMUST00000039476 6776 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Vps53Q8CCB4 Bcs1l-202ENSMUST00000113732 1679 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
Vps53Q8CCB4 Klhl5-204ENSMUST00000204097 3149 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Vps53Q8CCB4 Zfp622-201ENSMUST00000061875 2802 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Vps53Q8CCB4 Fam129c-208ENSMUST00000143662 2267 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
Vps53Q8CCB4 Pgm3-202ENSMUST00000072585 1920 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Vps53Q8CCB4 Gm26829-201ENSMUST00000180581 934 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Vps53Q8CCB4 Rps2-ps2-201ENSMUST00000194305 881 ntBASIC19.67■□□□□ 0.74
Vps53Q8CCB4 Git2-215ENSMUST00000178440 4944 ntTSL 5 BASIC19.67■□□□□ 0.74
Vps53Q8CCB4 Git2-201ENSMUST00000043283 4938 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Vps53Q8CCB4 1300014J16Rik-201ENSMUST00000219015 1337 ntBASIC19.67■□□□□ 0.74
Vps53Q8CCB4 Ccdc105-201ENSMUST00000105383 1714 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Vps53Q8CCB4 Gm15635-204ENSMUST00000208024 2539 ntBASIC19.67■□□□□ 0.74
Vps53Q8CCB4 Fbrsl1-206ENSMUST00000198834 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Vps53Q8CCB4 Mfsd13a-202ENSMUST00000128041 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Vps53Q8CCB4 Tnfsf13-201ENSMUST00000018896 1407 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Vps53Q8CCB4 Nr3c2-203ENSMUST00000109912 5675 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Vps53Q8CCB4 Gm45623-201ENSMUST00000210744 1457 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
Vps53Q8CCB4 Fxr1-201ENSMUST00000001620 2459 ntTSL 5 BASIC19.66■□□□□ 0.74
Vps53Q8CCB4 Fgf4-201ENSMUST00000060336 3030 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Vps53Q8CCB4 Prdm6-201ENSMUST00000091900 2601 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Vps53Q8CCB4 A430057M04Rik-202ENSMUST00000170150 2176 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Vps53Q8CCB4 Frmd5-203ENSMUST00000121219 2262 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Vps53Q8CCB4 Ppp2r5e-201ENSMUST00000021447 4810 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Vps53Q8CCB4 4833413E03Rik-201ENSMUST00000013706 1091 ntTSL 5 BASIC19.66■□□□□ 0.74
Vps53Q8CCB4 Snrnp48-202ENSMUST00000178564 847 ntTSL 5 BASIC19.66■□□□□ 0.74
Vps53Q8CCB4 Spata33-206ENSMUST00000212637 569 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
Vps53Q8CCB4 Hps4-201ENSMUST00000035279 2836 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Vps53Q8CCB4 Mmp28-201ENSMUST00000021020 2311 ntAPPRIS P4 TSL 1 (best) BASIC19.66■□□□□ 0.74
Vps53Q8CCB4 Bend4-201ENSMUST00000169190 7935 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
Vps53Q8CCB4 Efr3a-201ENSMUST00000015146 5215 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Vps53Q8CCB4 Pacsin1-203ENSMUST00000114872 1647 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Vps53Q8CCB4 Rprd1b-207ENSMUST00000152452 1910 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Vps53Q8CCB4 Tmem60-201ENSMUST00000115259 1147 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Vps53Q8CCB4 Smim12-201ENSMUST00000142029 1022 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Vps53Q8CCB4 Utf1-201ENSMUST00000168457 1227 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Vps53Q8CCB4 Gm20544-201ENSMUST00000174338 690 ntTSL 3 BASIC19.65■□□□□ 0.74
Vps53Q8CCB4 Prss27-201ENSMUST00000059482 1253 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Vps53Q8CCB4 Nkx2-9-201ENSMUST00000072631 1264 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Vps53Q8CCB4 Ecel1-204ENSMUST00000161002 3033 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Vps53Q8CCB4 Il4i1-202ENSMUST00000118125 2275 ntAPPRIS ALT2 TSL 2 BASIC19.65■□□□□ 0.74
Vps53Q8CCB4 Rasl10b-204ENSMUST00000175848 3249 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Vps53Q8CCB4 Camk2n1-201ENSMUST00000050918 4444 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Vps53Q8CCB4 Nsmf-202ENSMUST00000074422 2824 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Vps53Q8CCB4 Amigo2-201ENSMUST00000053106 2871 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Vps53Q8CCB4 Dag1-201ENSMUST00000080435 4364 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Vps53Q8CCB4 Lrrc43-202ENSMUST00000121444 2016 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.74
Vps53Q8CCB4 5031425F14Rik-201ENSMUST00000127920 2098 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
Vps53Q8CCB4 Ift74-201ENSMUST00000030311 2139 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.74
Vps53Q8CCB4 Urgcp-201ENSMUST00000053427 5527 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.74
Vps53Q8CCB4 9330160F10Rik-201ENSMUST00000101007 2766 ntBASIC19.64■□□□□ 0.73
Vps53Q8CCB4 Ptpro-203ENSMUST00000167679 5096 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Vps53Q8CCB4 Gm6345-202ENSMUST00000180900 204 ntBASIC19.64■□□□□ 0.73
Vps53Q8CCB4 Gm26938-201ENSMUST00000182839 744 ntAPPRIS P1 TSL 3 BASIC19.64■□□□□ 0.73
Vps53Q8CCB4 Gm2274-201ENSMUST00000184539 609 ntBASIC19.64■□□□□ 0.73
Vps53Q8CCB4 Arpc4-204ENSMUST00000204802 794 ntTSL 3 BASIC19.64■□□□□ 0.73
Vps53Q8CCB4 St8sia6-201ENSMUST00000003509 7618 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Vps53Q8CCB4 Gdpd5-201ENSMUST00000037528 4611 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Vps53Q8CCB4 Rb1-201ENSMUST00000022701 4656 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Vps53Q8CCB4 4430402I18Rik-205ENSMUST00000162110 1559 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
Vps53Q8CCB4 Puf60-201ENSMUST00000002599 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Vps53Q8CCB4 Arhgef25-212ENSMUST00000222006 1896 ntTSL 5 BASIC19.64■□□□□ 0.73
Vps53Q8CCB4 Nes-201ENSMUST00000090973 6126 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Vps53Q8CCB4 Myo9b-206ENSMUST00000212935 6316 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.73
Vps53Q8CCB4 Rtkn-201ENSMUST00000065512 2191 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Vps53Q8CCB4 Gm43338-201ENSMUST00000198617 2223 ntBASIC19.64■□□□□ 0.73
Vps53Q8CCB4 Arhgef7-205ENSMUST00000110909 4926 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Vps53Q8CCB4 Camsap2-203ENSMUST00000192314 4916 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Vps53Q8CCB4 Osgin2-201ENSMUST00000037198 2658 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Vps53Q8CCB4 Scly-201ENSMUST00000027532 2202 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Vps53Q8CCB4 Cyr61-201ENSMUST00000029846 2019 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Vps53Q8CCB4 D730003I15Rik-202ENSMUST00000194375 1667 ntBASIC19.63■□□□□ 0.73
Vps53Q8CCB4 Aspscr1-205ENSMUST00000106160 1550 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Vps53Q8CCB4 Zpbp2-202ENSMUST00000081033 1300 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Vps53Q8CCB4 Mir5130-201ENSMUST00000175160 84 ntBASIC19.63■□□□□ 0.73
Retrieved 100 of 76,532 protein–RNA pairs in 16.6 ms