Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Ttyh3-202ENSMUST00000197452 4576 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Trim56Q80VI1 Fbxo17-203ENSMUST00000108279 1563 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Trim56Q80VI1 Mtss1l-201ENSMUST00000052457 4717 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Trim56Q80VI1 Pcolce-202ENSMUST00000054564 1585 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
Trim56Q80VI1 Atxn7l2-204ENSMUST00000119650 2274 ntTSL 5 BASIC19.95■□□□□ 0.78
Trim56Q80VI1 St7l-201ENSMUST00000059271 5728 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
Trim56Q80VI1 Polr3e-203ENSMUST00000207481 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
Trim56Q80VI1 Sult2b1-204ENSMUST00000209739 1858 ntAPPRIS ALT2 TSL 5 BASIC19.94■□□□□ 0.78
Trim56Q80VI1 Stk39-201ENSMUST00000102715 3536 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Trim56Q80VI1 Sytl3-201ENSMUST00000097430 2100 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Trim56Q80VI1 Dlg3-204ENSMUST00000113736 4940 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Trim56Q80VI1 Lonp1-201ENSMUST00000047226 2963 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Trim56Q80VI1 Inppl1-202ENSMUST00000165052 4730 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Trim56Q80VI1 Agpat3-201ENSMUST00000001240 5980 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Trim56Q80VI1 D3Ertd751e-205ENSMUST00000120167 773 ntAPPRIS ALT2 TSL 5 BASIC19.94■□□□□ 0.78
Trim56Q80VI1 Gm17349-201ENSMUST00000163472 300 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
Trim56Q80VI1 Dusp13-213ENSMUST00000184703 902 ntAPPRIS ALT1 TSL 5 BASIC19.94■□□□□ 0.78
Trim56Q80VI1 Gm10358-201ENSMUST00000212864 1250 ntAPPRIS P1 BASIC19.94■□□□□ 0.78
Trim56Q80VI1 Nme3-201ENSMUST00000024978 715 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Trim56Q80VI1 Zfp92-202ENSMUST00000086470 2050 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Trim56Q80VI1 Gjb3-201ENSMUST00000046532 1880 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Trim56Q80VI1 Ercc6l2-203ENSMUST00000067821 2743 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
Trim56Q80VI1 Dab2-208ENSMUST00000160134 1374 ntAPPRIS ALT2 TSL 5 BASIC19.94■□□□□ 0.78
Trim56Q80VI1 Gm6190-201ENSMUST00000220683 1374 ntBASIC19.94■□□□□ 0.78
Trim56Q80VI1 Relb-201ENSMUST00000049912 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
Trim56Q80VI1 4930447C04Rik-202ENSMUST00000110489 1988 ntAPPRIS ALT2 TSL 5 BASIC19.94■□□□□ 0.78
Trim56Q80VI1 Gm11841-201ENSMUST00000117060 1963 ntBASIC19.94■□□□□ 0.78
Trim56Q80VI1 Gm26526-201ENSMUST00000181075 2927 ntTSL 5 BASIC19.93■□□□□ 0.78
Trim56Q80VI1 Cops6-201ENSMUST00000019638 1787 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
Trim56Q80VI1 Tmtc1-202ENSMUST00000100772 8269 ntTSL 2 BASIC19.93■□□□□ 0.78
Trim56Q80VI1 Smc6-201ENSMUST00000020931 5603 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Trim56Q80VI1 Isl2-201ENSMUST00000034869 1854 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Trim56Q80VI1 Traf3-203ENSMUST00000117269 6972 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Trim56Q80VI1 Ndufab1-ps-201ENSMUST00000166096 468 ntBASIC19.93■□□□□ 0.78
Trim56Q80VI1 Gm6345-202ENSMUST00000180900 204 ntBASIC19.93■□□□□ 0.78
Trim56Q80VI1 Hint1-201ENSMUST00000020504 636 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Trim56Q80VI1 Hint2-201ENSMUST00000030192 610 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Trim56Q80VI1 Snrnp35-201ENSMUST00000031349 1115 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Trim56Q80VI1 Fbxo36-201ENSMUST00000097672 901 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Trim56Q80VI1 Slc16a7-205ENSMUST00000210780 2562 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
Trim56Q80VI1 4833445I07Rik-201ENSMUST00000193193 1642 ntBASIC19.93■□□□□ 0.78
Trim56Q80VI1 Gm19569-202ENSMUST00000184658 1305 ntTSL 2 BASIC19.93■□□□□ 0.78
Trim56Q80VI1 Bcl9l-206ENSMUST00000220303 5760 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
Trim56Q80VI1 Gm8258-201ENSMUST00000055593 1449 ntBASIC19.93■□□□□ 0.78
Trim56Q80VI1 Hmg20b-204ENSMUST00000122993 1502 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Trim56Q80VI1 Haus4-201ENSMUST00000022784 1587 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Trim56Q80VI1 Slain2-202ENSMUST00000144843 4833 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Trim56Q80VI1 1700024G13Rik-201ENSMUST00000100723 850 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Trim56Q80VI1 Gm37722-201ENSMUST00000193757 208 ntBASIC19.92■□□□□ 0.78
Trim56Q80VI1 Nudt1-201ENSMUST00000050205 954 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Trim56Q80VI1 Nudt1-202ENSMUST00000071881 952 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Trim56Q80VI1 Rpl21-202ENSMUST00000075453 899 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Trim56Q80VI1 Birc5-201ENSMUST00000081387 947 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Trim56Q80VI1 Cebpg-202ENSMUST00000130491 4709 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Trim56Q80VI1 Ttc13-201ENSMUST00000041614 3038 ntTSL 2 BASIC19.92■□□□□ 0.78
Trim56Q80VI1 Tmtc4-209ENSMUST00000148661 2719 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Trim56Q80VI1 Zkscan6-202ENSMUST00000071465 2270 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Trim56Q80VI1 Stard6-201ENSMUST00000114959 1496 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Trim56Q80VI1 Cxadr-201ENSMUST00000023572 5734 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
Trim56Q80VI1 Sar1a-201ENSMUST00000020285 2613 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Trim56Q80VI1 Ubxn11-202ENSMUST00000074690 1573 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
Trim56Q80VI1 Itsn2-201ENSMUST00000062580 5987 ntAPPRIS P2 TSL 5 BASIC19.91■□□□□ 0.78
Trim56Q80VI1 Zbtb45-201ENSMUST00000051390 2171 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Trim56Q80VI1 Irf5-205ENSMUST00000167252 1693 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
Trim56Q80VI1 Evx2-201ENSMUST00000001867 4191 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
Trim56Q80VI1 Tspan5-201ENSMUST00000029800 6653 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Trim56Q80VI1 Gab1-202ENSMUST00000210676 4985 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Trim56Q80VI1 Gm11355-201ENSMUST00000121120 306 ntBASIC19.91■□□□□ 0.78
Trim56Q80VI1 AA414768-201ENSMUST00000121924 1257 ntBASIC19.91■□□□□ 0.78
Trim56Q80VI1 Gm38282-201ENSMUST00000192751 695 ntTSL 5 BASIC19.91■□□□□ 0.78
Trim56Q80VI1 Gm42477-201ENSMUST00000202427 469 ntTSL 3 BASIC19.91■□□□□ 0.78
Trim56Q80VI1 Il17a-201ENSMUST00000027061 1171 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Trim56Q80VI1 Nt5c1a-201ENSMUST00000068262 1220 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Trim56Q80VI1 Nkpd1-201ENSMUST00000078908 2753 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
Trim56Q80VI1 4933428G20Rik-201ENSMUST00000056955 1425 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Trim56Q80VI1 Tbcb-201ENSMUST00000006254 1416 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Trim56Q80VI1 Eps8-203ENSMUST00000111878 3560 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Trim56Q80VI1 Eif2b5-201ENSMUST00000003320 3186 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Trim56Q80VI1 Tmem233-201ENSMUST00000111997 2477 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
Trim56Q80VI1 Dtx2-201ENSMUST00000005072 2562 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
Trim56Q80VI1 Crhbp-201ENSMUST00000045583 1701 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Trim56Q80VI1 Mtmr1-201ENSMUST00000015358 4634 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
Trim56Q80VI1 Peli2-201ENSMUST00000073150 5900 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Trim56Q80VI1 Fndc11-202ENSMUST00000108835 1154 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
Trim56Q80VI1 Hist1h2bj-201ENSMUST00000110452 463 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
Trim56Q80VI1 Hist1h2bp-202ENSMUST00000110473 621 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Trim56Q80VI1 Eif4e2-205ENSMUST00000113232 1125 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Trim56Q80VI1 Gm15138-201ENSMUST00000151778 379 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Trim56Q80VI1 Tppp3-202ENSMUST00000176419 719 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Trim56Q80VI1 Cnn1-203ENSMUST00000214601 1225 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Trim56Q80VI1 Hist1h2bm-201ENSMUST00000224651 524 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
Trim56Q80VI1 Wnk2-211ENSMUST00000162581 6628 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
Trim56Q80VI1 5830415G21Rik-201ENSMUST00000192543 1332 ntBASIC19.9■□□□□ 0.78
Trim56Q80VI1 Chtf8-206ENSMUST00000177068 2931 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Trim56Q80VI1 Ogg1-201ENSMUST00000032406 1549 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Trim56Q80VI1 Klf14-201ENSMUST00000101589 3056 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
Trim56Q80VI1 Erlin1-201ENSMUST00000071698 3228 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
Trim56Q80VI1 Nsmf-203ENSMUST00000100334 2957 ntTSL 1 (best) BASIC19.89■□□□□ 0.78
Trim56Q80VI1 Mipep-201ENSMUST00000063562 3015 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
Trim56Q80VI1 Fam171a2-201ENSMUST00000049057 3118 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
Retrieved 100 of 76,532 protein–RNA pairs in 34.8 ms