Protein–RNA interactions for Protein: Q5I043

Usp28, Ubiquitin carboxyl-terminal hydrolase 28, mousemouse

Predictions only

Length 1,051 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp28Q5I043 Gm16867-201ENSMUST00000179116 3084 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Usp28Q5I043 Chrd-202ENSMUST00000115423 2417 ntTSL 2 BASIC19.22■□□□□ 0.67
Usp28Q5I043 E130307A14Rik-213ENSMUST00000155482 2803 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Usp28Q5I043 Pde8b-202ENSMUST00000067082 2598 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
Usp28Q5I043 Spats2l-212ENSMUST00000170139 2315 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
Usp28Q5I043 1810013L24Rik-201ENSMUST00000023150 4066 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Usp28Q5I043 Podnl1-201ENSMUST00000093380 2090 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Usp28Q5I043 Echdc2-204ENSMUST00000116309 1238 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Usp28Q5I043 Gm37939-201ENSMUST00000192309 447 ntTSL 5 BASIC19.22■□□□□ 0.67
Usp28Q5I043 Gm9731-201ENSMUST00000209480 747 ntBASIC19.22■□□□□ 0.67
Usp28Q5I043 Tmem205-201ENSMUST00000046831 785 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Usp28Q5I043 Mmp23-201ENSMUST00000030937 1434 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Usp28Q5I043 Capn10-201ENSMUST00000027488 2902 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Usp28Q5I043 Bhlhb9-201ENSMUST00000068755 2823 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Usp28Q5I043 Wdr13-202ENSMUST00000115623 1749 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
Usp28Q5I043 Dscam-201ENSMUST00000056102 7498 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Usp28Q5I043 Wscd1-203ENSMUST00000108511 2866 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
Usp28Q5I043 Agpat1-201ENSMUST00000037489 2190 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Usp28Q5I043 Il3ra-203ENSMUST00000224163 2315 ntAPPRIS P2 BASIC19.22■□□□□ 0.67
Usp28Q5I043 Nudt16-201ENSMUST00000035179 1631 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Usp28Q5I043 Rgs3-203ENSMUST00000098031 2072 ntAPPRIS ALT1 TSL 5 BASIC19.21■□□□□ 0.67
Usp28Q5I043 Tmem214-201ENSMUST00000114716 2220 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
Usp28Q5I043 AU022751-202ENSMUST00000117544 2201 ntAPPRIS P4 BASIC19.21■□□□□ 0.67
Usp28Q5I043 Med7-209ENSMUST00000170928 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Usp28Q5I043 Ebf3-204ENSMUST00000169486 4994 ntAPPRIS ALT1 TSL 5 BASIC19.21■□□□□ 0.67
Usp28Q5I043 Rusc2-202ENSMUST00000098106 5325 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Usp28Q5I043 H2-Q10-202ENSMUST00000174525 1991 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
Usp28Q5I043 Fbrsl1-201ENSMUST00000056124 2700 ntTSL 2 BASIC19.21■□□□□ 0.67
Usp28Q5I043 Acbd3-201ENSMUST00000027780 3471 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Usp28Q5I043 AC107711.5-202ENSMUST00000226429 702 ntBASIC19.21■□□□□ 0.67
Usp28Q5I043 Slc11a1-201ENSMUST00000027368 2315 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Usp28Q5I043 Tnnt2-201ENSMUST00000027671 1064 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
Usp28Q5I043 Fam167b-201ENSMUST00000052835 913 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Usp28Q5I043 P2rx2-201ENSMUST00000058016 1895 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Usp28Q5I043 Cops7b-201ENSMUST00000027446 2231 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Usp28Q5I043 Gm16861-201ENSMUST00000181498 1647 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Usp28Q5I043 Tm9sf2-203ENSMUST00000171318 1494 ntTSL 5 BASIC19.21■□□□□ 0.67
Usp28Q5I043 Leprotl1-201ENSMUST00000033910 2879 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Usp28Q5I043 Jag1-201ENSMUST00000028735 5612 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Usp28Q5I043 Tle4-201ENSMUST00000052011 4555 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Usp28Q5I043 Vim-201ENSMUST00000028062 2193 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Usp28Q5I043 Ptpre-201ENSMUST00000073961 5410 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
Usp28Q5I043 Sphk1-206ENSMUST00000106388 1891 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
Usp28Q5I043 Tarbp1-201ENSMUST00000170518 6383 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
Usp28Q5I043 Pou2f2-202ENSMUST00000108413 1599 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Usp28Q5I043 Atp5b-201ENSMUST00000026459 1916 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Usp28Q5I043 Aig1-201ENSMUST00000019942 1439 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Usp28Q5I043 Ccnyl1-202ENSMUST00000114077 3281 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Usp28Q5I043 AC122335.2-201ENSMUST00000213901 6181 ntBASIC19.2■□□□□ 0.66
Usp28Q5I043 Gm7638-201ENSMUST00000121348 967 ntBASIC19.2■□□□□ 0.66
Usp28Q5I043 Sae1-203ENSMUST00000210999 1254 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Usp28Q5I043 Fbxl21-203ENSMUST00000121871 1963 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Usp28Q5I043 Dip2c-203ENSMUST00000174552 8023 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Usp28Q5I043 Dnajb2-208ENSMUST00000188346 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Usp28Q5I043 Prelid3a-201ENSMUST00000025411 2167 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Usp28Q5I043 Ppm1d-201ENSMUST00000020835 2899 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Usp28Q5I043 Plppr5-202ENSMUST00000106473 4294 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Usp28Q5I043 Rock2-201ENSMUST00000020904 7644 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
Usp28Q5I043 Celf6-204ENSMUST00000121266 2610 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Usp28Q5I043 Gata6-201ENSMUST00000047762 3194 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Usp28Q5I043 Rgl1-202ENSMUST00000111857 3037 ntTSL 5 BASIC19.19■□□□□ 0.66
Usp28Q5I043 Nipsnap1-201ENSMUST00000038570 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Usp28Q5I043 Cygb-201ENSMUST00000021166 2331 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Usp28Q5I043 Prkcb-201ENSMUST00000064921 2557 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Usp28Q5I043 Rint1-204ENSMUST00000117783 560 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Usp28Q5I043 Gm13647-201ENSMUST00000154654 622 ntTSL 5 BASIC19.19■□□□□ 0.66
Usp28Q5I043 Gm38027-201ENSMUST00000192315 235 ntBASIC19.19■□□□□ 0.66
Usp28Q5I043 Aprt-204ENSMUST00000212093 723 ntTSL 2 BASIC19.19■□□□□ 0.66
Usp28Q5I043 Atp5a1-201ENSMUST00000026495 2471 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Usp28Q5I043 A230072E10Rik-203ENSMUST00000175942 2940 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Usp28Q5I043 Yipf4-201ENSMUST00000024873 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Usp28Q5I043 Wasf3-201ENSMUST00000016143 5196 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Usp28Q5I043 Mdfi-202ENSMUST00000066368 1711 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Usp28Q5I043 Lbp-202ENSMUST00000109491 1322 ntTSL 2 BASIC19.19■□□□□ 0.66
Usp28Q5I043 Atp1a1-201ENSMUST00000036493 3679 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Usp28Q5I043 Pacsin1-202ENSMUST00000097360 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Usp28Q5I043 Wdr45-201ENSMUST00000043045 1609 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Usp28Q5I043 Adss-201ENSMUST00000016105 2771 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Usp28Q5I043 Coro1a-202ENSMUST00000106364 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Usp28Q5I043 5430402O13Rik-201ENSMUST00000126537 869 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Usp28Q5I043 Gm28876-201ENSMUST00000188137 703 ntTSL 3 BASIC19.18■□□□□ 0.66
Usp28Q5I043 Rasip1-201ENSMUST00000057927 3202 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Usp28Q5I043 Sgpp1-201ENSMUST00000021450 3323 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Usp28Q5I043 Slain2-201ENSMUST00000143829 4828 ntTSL 5 BASIC19.18■□□□□ 0.66
Usp28Q5I043 Ggt6-202ENSMUST00000100903 1387 ntTSL 5 BASIC19.18■□□□□ 0.66
Usp28Q5I043 Lrrfip1-212ENSMUST00000189617 2155 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Usp28Q5I043 Mfsd12-201ENSMUST00000044844 3971 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Usp28Q5I043 Aldh7a1-201ENSMUST00000066208 1914 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
Usp28Q5I043 Irgq-201ENSMUST00000049020 6083 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Usp28Q5I043 Tex261-201ENSMUST00000014892 2984 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Usp28Q5I043 Klf9-201ENSMUST00000036884 3263 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Usp28Q5I043 Il6st-206ENSMUST00000183886 3004 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Usp28Q5I043 Anapc7-201ENSMUST00000031422 2751 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Usp28Q5I043 Drd2-201ENSMUST00000075764 2547 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Usp28Q5I043 Ttyh1-217ENSMUST00000206869 1491 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Usp28Q5I043 Usb1-201ENSMUST00000034245 1758 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Usp28Q5I043 Rnf157-201ENSMUST00000100202 4619 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Usp28Q5I043 Kdelr2-201ENSMUST00000110731 1829 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Usp28Q5I043 Gusb-202ENSMUST00000111307 932 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Usp28Q5I043 Zmynd19-202ENSMUST00000148042 1103 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 44.9 ms