Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Vamp8-201ENSMUST00000059983 820 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Ddb1Q3U1J4 1110038F14Rik-201ENSMUST00000071792 1010 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Ddb1Q3U1J4 Gm15590-201ENSMUST00000078419 552 ntBASIC21.48■■□□□ 1.03
Ddb1Q3U1J4 Slc43a1-202ENSMUST00000111624 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
Ddb1Q3U1J4 Gas2-201ENSMUST00000051912 2181 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Ddb1Q3U1J4 Cnih1-201ENSMUST00000015903 1538 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Ddb1Q3U1J4 Ift57-201ENSMUST00000046777 2601 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Ddb1Q3U1J4 Glmn-201ENSMUST00000078021 2015 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Ddb1Q3U1J4 AU022751-201ENSMUST00000101698 1838 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
Ddb1Q3U1J4 AC131586.3-201ENSMUST00000228355 1367 ntBASIC21.48■■□□□ 1.03
Ddb1Q3U1J4 Rab3a-201ENSMUST00000034301 1363 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Ddb1Q3U1J4 Fbxl5-204ENSMUST00000119523 2801 ntTSL 5 BASIC21.47■■□□□ 1.03
Ddb1Q3U1J4 Pdss2-201ENSMUST00000095725 2127 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Ddb1Q3U1J4 Enoph1-201ENSMUST00000031268 1420 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Ddb1Q3U1J4 Dnase2a-202ENSMUST00000109744 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
Ddb1Q3U1J4 Acp7-201ENSMUST00000040112 1978 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Ddb1Q3U1J4 Arfip2-202ENSMUST00000084782 2254 ntAPPRIS P2 TSL 5 BASIC21.47■■□□□ 1.03
Ddb1Q3U1J4 Mfsd10-203ENSMUST00000114331 1754 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Ddb1Q3U1J4 Cyb561d2-201ENSMUST00000041459 1786 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Ddb1Q3U1J4 Thap3-202ENSMUST00000105665 832 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
Ddb1Q3U1J4 4930515G01Rik-201ENSMUST00000173208 1247 ntBASIC21.47■■□□□ 1.03
Ddb1Q3U1J4 Gm25745-201ENSMUST00000174945 133 ntBASIC21.47■■□□□ 1.03
Ddb1Q3U1J4 Gm24513-201ENSMUST00000174964 138 ntBASIC21.47■■□□□ 1.03
Ddb1Q3U1J4 Nptn-211ENSMUST00000177064 582 ntTSL 5 BASIC21.47■■□□□ 1.03
Ddb1Q3U1J4 Gm4535-201ENSMUST00000182274 558 ntBASIC21.47■■□□□ 1.03
Ddb1Q3U1J4 Gm27397-201ENSMUST00000184997 107 ntBASIC21.47■■□□□ 1.03
Ddb1Q3U1J4 Gm26646-202ENSMUST00000205705 439 ntTSL 5 BASIC21.47■■□□□ 1.03
Ddb1Q3U1J4 AC154222.1-201ENSMUST00000223882 475 ntBASIC21.47■■□□□ 1.03
Ddb1Q3U1J4 Rangrf-201ENSMUST00000038644 820 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Ddb1Q3U1J4 Gm10355-201ENSMUST00000097146 517 ntBASIC21.47■■□□□ 1.03
Ddb1Q3U1J4 Ncoa5-202ENSMUST00000121377 2930 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
Ddb1Q3U1J4 Fcgrt-203ENSMUST00000210642 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
Ddb1Q3U1J4 Tbx2-201ENSMUST00000000095 3626 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Ddb1Q3U1J4 Haghl-201ENSMUST00000077938 1405 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Ddb1Q3U1J4 Ccdc105-201ENSMUST00000105383 1714 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Ddb1Q3U1J4 Dbnl-203ENSMUST00000109845 2001 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
Ddb1Q3U1J4 Naa30-205ENSMUST00000153488 4446 ntAPPRIS P2 TSL 1 (best) BASIC21.46■■□□□ 1.03
Ddb1Q3U1J4 Cmip-202ENSMUST00000166750 2408 ntAPPRIS P1 TSL 5 BASIC21.46■■□□□ 1.03
Ddb1Q3U1J4 Scaf11-201ENSMUST00000047835 5766 ntTSL 5 BASIC21.46■■□□□ 1.03
Ddb1Q3U1J4 Camsap3-207ENSMUST00000207712 2539 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
Ddb1Q3U1J4 Nt5c-202ENSMUST00000106530 836 ntTSL 3 BASIC21.46■■□□□ 1.03
Ddb1Q3U1J4 Gm4995-201ENSMUST00000117247 432 ntBASIC21.46■■□□□ 1.03
Ddb1Q3U1J4 Gm13431-203ENSMUST00000147012 388 ntTSL 2 BASIC21.46■■□□□ 1.03
Ddb1Q3U1J4 Ten1-201ENSMUST00000021130 902 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Ddb1Q3U1J4 Chrna2-202ENSMUST00000206455 1933 ntAPPRIS P1 TSL 5 BASIC21.46■■□□□ 1.03
Ddb1Q3U1J4 AC125311.2-201ENSMUST00000227477 1940 ntBASIC21.46■■□□□ 1.03
Ddb1Q3U1J4 Mboat1-201ENSMUST00000047311 2905 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Ddb1Q3U1J4 Rbm3-206ENSMUST00000115621 1338 ntAPPRIS ALT1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Ddb1Q3U1J4 Insig2-201ENSMUST00000003818 2697 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Ddb1Q3U1J4 Erich2-203ENSMUST00000134607 1659 ntAPPRIS ALT2 TSL 5 BASIC21.46■■□□□ 1.03
Ddb1Q3U1J4 Negr1-201ENSMUST00000041425 2095 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
Ddb1Q3U1J4 Tril-201ENSMUST00000127748 5363 ntAPPRIS P1 BASIC21.46■■□□□ 1.03
Ddb1Q3U1J4 Cebpa-201ENSMUST00000042985 2626 ntAPPRIS P1 BASIC21.45■■□□□ 1.02
Ddb1Q3U1J4 Zmym3-204ENSMUST00000118092 1502 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
Ddb1Q3U1J4 Podxl2-201ENSMUST00000038409 1994 ntAPPRIS P3 TSL 1 (best) BASIC21.45■■□□□ 1.02
Ddb1Q3U1J4 Cacnb3-201ENSMUST00000003442 2819 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Ddb1Q3U1J4 Evx1-202ENSMUST00000129243 1034 ntTSL 3 BASIC21.45■■□□□ 1.02
Ddb1Q3U1J4 Urah-204ENSMUST00000185612 716 ntAPPRIS P3 TSL 3 BASIC21.45■■□□□ 1.02
Ddb1Q3U1J4 Gm29456-201ENSMUST00000189894 768 ntTSL 3 BASIC21.45■■□□□ 1.02
Ddb1Q3U1J4 Gm36584-201ENSMUST00000209046 708 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
Ddb1Q3U1J4 AC171004.1-201ENSMUST00000221723 664 ntTSL 3 BASIC21.45■■□□□ 1.02
Ddb1Q3U1J4 AC225888.1-201ENSMUST00000227184 728 ntBASIC21.45■■□□□ 1.02
Ddb1Q3U1J4 Gnmt-201ENSMUST00000002846 1035 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Ddb1Q3U1J4 Cdk8-201ENSMUST00000031640 2973 ntAPPRIS P1 TSL 2 BASIC21.45■■□□□ 1.02
Ddb1Q3U1J4 Epc1-202ENSMUST00000050542 565 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
Ddb1Q3U1J4 Mast4-202ENSMUST00000164111 2350 ntTSL 2 BASIC21.45■■□□□ 1.02
Ddb1Q3U1J4 Fdxr-201ENSMUST00000021078 1948 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Ddb1Q3U1J4 Grk6-206ENSMUST00000224995 2971 ntBASIC21.45■■□□□ 1.02
Ddb1Q3U1J4 H2-Q7-202ENSMUST00000076256 1523 ntAPPRIS ALT2 TSL 5 BASIC21.45■■□□□ 1.02
Ddb1Q3U1J4 Hoxaas2-202ENSMUST00000155922 1567 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
Ddb1Q3U1J4 Oaf-201ENSMUST00000034512 2526 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Ddb1Q3U1J4 Sorcs2-201ENSMUST00000037370 5707 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Ddb1Q3U1J4 Tmsb4x-202ENSMUST00000112175 864 ntTSL 2 BASIC21.44■■□□□ 1.02
Ddb1Q3U1J4 Fam107b-203ENSMUST00000115053 688 ntAPPRIS P1 TSL 3 BASIC21.44■■□□□ 1.02
Ddb1Q3U1J4 Ptpa-208ENSMUST00000131476 989 ntTSL 2 BASIC21.44■■□□□ 1.02
Ddb1Q3U1J4 Calcb-203ENSMUST00000182816 706 ntAPPRIS ALT2 TSL 5 BASIC21.44■■□□□ 1.02
Ddb1Q3U1J4 Rnf13-209ENSMUST00000199041 1062 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
Ddb1Q3U1J4 Urah-207ENSMUST00000211372 688 ntAPPRIS P3 TSL 2 BASIC21.44■■□□□ 1.02
Ddb1Q3U1J4 Aldoa-ps3-201ENSMUST00000217558 306 ntBASIC21.44■■□□□ 1.02
Ddb1Q3U1J4 Urah-201ENSMUST00000026554 890 ntAPPRIS P3 TSL 1 (best) BASIC21.44■■□□□ 1.02
Ddb1Q3U1J4 Tsfm-201ENSMUST00000040560 1206 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Ddb1Q3U1J4 Arl4c-203ENSMUST00000187810 2740 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Ddb1Q3U1J4 Arpc1b-211ENSMUST00000196111 1394 ntAPPRIS ALT1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Ddb1Q3U1J4 Ano10-206ENSMUST00000216670 2108 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
Ddb1Q3U1J4 Tmem132b-201ENSMUST00000031446 7995 ntAPPRIS P1 TSL 5 BASIC21.44■■□□□ 1.02
Ddb1Q3U1J4 Trpc1-201ENSMUST00000053785 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
Ddb1Q3U1J4 CT010456.1-201ENSMUST00000222465 1688 ntTSL 5 BASIC21.44■■□□□ 1.02
Ddb1Q3U1J4 Ccdc174-201ENSMUST00000037783 1752 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Ddb1Q3U1J4 Dennd2a-201ENSMUST00000036877 4468 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Ddb1Q3U1J4 Tbkbp1-203ENSMUST00000107614 2391 ntAPPRIS ALT2 TSL 5 BASIC21.43■■□□□ 1.02
Ddb1Q3U1J4 Myo16-204ENSMUST00000208309 2462 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
Ddb1Q3U1J4 Gm14822-201ENSMUST00000122247 291 ntBASIC21.43■■□□□ 1.02
Ddb1Q3U1J4 Nat8b-ps-201ENSMUST00000162660 699 ntBASIC21.43■■□□□ 1.02
Ddb1Q3U1J4 Chmp2a-201ENSMUST00000005711 949 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Ddb1Q3U1J4 Mdk-202ENSMUST00000069423 773 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Ddb1Q3U1J4 Setd3-201ENSMUST00000071095 2755 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Ddb1Q3U1J4 Nsun2-202ENSMUST00000109699 2834 ntAPPRIS P2 TSL 1 (best) BASIC21.43■■□□□ 1.02
Ddb1Q3U1J4 Gnb1-202ENSMUST00000105616 3088 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Ddb1Q3U1J4 Ercc6l2-202ENSMUST00000021926 1592 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
Ddb1Q3U1J4 Vrk2-201ENSMUST00000078362 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Retrieved 100 of 76,532 protein–RNA pairs in 30 ms