Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Rsph6a-202ENSMUST00000076887 1580 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Col1a1P11087 Dok3-201ENSMUST00000047877 1546 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Col1a1P11087 Cldn7-201ENSMUST00000018713 1335 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Col1a1P11087 Cnn2-201ENSMUST00000004784 2460 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Col1a1P11087 Tm7sf2-201ENSMUST00000025713 1471 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Col1a1P11087 Gm25990-201ENSMUST00000102440 86 ntBASIC19.77■□□□□ 0.76
Col1a1P11087 B9d2-201ENSMUST00000108403 1021 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Col1a1P11087 Csrp3-202ENSMUST00000167786 899 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Col1a1P11087 Gm7230-201ENSMUST00000173026 815 ntBASIC19.77■□□□□ 0.76
Col1a1P11087 Washc3-203ENSMUST00000182183 838 ntAPPRIS ALT2 TSL 2 BASIC19.77■□□□□ 0.76
Col1a1P11087 Fosb-206ENSMUST00000208446 1090 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Col1a1P11087 Lrrc26-201ENSMUST00000028337 1190 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Col1a1P11087 Sfrp2-201ENSMUST00000029625 2003 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
Col1a1P11087 Trpc4ap-202ENSMUST00000103140 3091 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.75
Col1a1P11087 Rbm3-206ENSMUST00000115621 1338 ntAPPRIS ALT1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Col1a1P11087 4930528D03Rik-201ENSMUST00000181528 1339 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Col1a1P11087 Mff-202ENSMUST00000078332 1894 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Col1a1P11087 Vrk2-201ENSMUST00000078362 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Col1a1P11087 Tpt1-205ENSMUST00000142061 996 ntTSL 5 BASIC19.76■□□□□ 0.75
Col1a1P11087 Gm44107-201ENSMUST00000203242 573 ntTSL 2 BASIC19.76■□□□□ 0.75
Col1a1P11087 Zfp810-203ENSMUST00000215202 822 ntTSL 3 BASIC19.76■□□□□ 0.75
Col1a1P11087 Stard3nl-209ENSMUST00000221380 1268 ntTSL 5 BASIC19.76■□□□□ 0.75
Col1a1P11087 Gm10190-201ENSMUST00000086549 324 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
Col1a1P11087 Ap1m1-201ENSMUST00000003117 2084 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Col1a1P11087 Rgp1-203ENSMUST00000117140 1635 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Col1a1P11087 Atp2b2-208ENSMUST00000205052 5658 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Col1a1P11087 Sept8-203ENSMUST00000120878 1806 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
Col1a1P11087 Foxp1-230ENSMUST00000177437 2468 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
Col1a1P11087 Dlg1-205ENSMUST00000115201 3248 ntTSL 5 BASIC19.75■□□□□ 0.75
Col1a1P11087 Chrna2-202ENSMUST00000206455 1933 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
Col1a1P11087 Dpf3-205ENSMUST00000177801 1092 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Col1a1P11087 Gm5264-201ENSMUST00000190584 848 ntBASIC19.75■□□□□ 0.75
Col1a1P11087 Psmb5-202ENSMUST00000227257 622 ntBASIC19.75■□□□□ 0.75
Col1a1P11087 Lce1l-201ENSMUST00000054426 670 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Col1a1P11087 Rpl27-201ENSMUST00000077856 614 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Col1a1P11087 Spg7-209ENSMUST00000149248 2896 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
Col1a1P11087 Arpc1b-211ENSMUST00000196111 1394 ntAPPRIS ALT1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Col1a1P11087 Dut-201ENSMUST00000051605 1950 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Col1a1P11087 4933433G15Rik-201ENSMUST00000180533 1481 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Col1a1P11087 Ccdc166-202ENSMUST00000183130 1563 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
Col1a1P11087 Adam15-203ENSMUST00000107446 1686 ntTSL 5 BASIC19.75■□□□□ 0.75
Col1a1P11087 Chrm4-201ENSMUST00000045537 1440 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
Col1a1P11087 Adam22-205ENSMUST00000115385 2318 ntTSL 2 BASIC19.74■□□□□ 0.75
Col1a1P11087 Fam107b-203ENSMUST00000115053 688 ntAPPRIS P1 TSL 3 BASIC19.74■□□□□ 0.75
Col1a1P11087 Gm11750-201ENSMUST00000146016 583 ntTSL 5 BASIC19.74■□□□□ 0.75
Col1a1P11087 Rnf170-208ENSMUST00000153528 1026 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
Col1a1P11087 Gm20878-206ENSMUST00000153997 903 ntAPPRIS P2 TSL 2 BASIC19.74■□□□□ 0.75
Col1a1P11087 Fbxo17-205ENSMUST00000167118 861 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
Col1a1P11087 Gm27702-201ENSMUST00000184512 56 ntBASIC19.74■□□□□ 0.75
Col1a1P11087 Gm26646-202ENSMUST00000205705 439 ntTSL 5 BASIC19.74■□□□□ 0.75
Col1a1P11087 Rbfox2-207ENSMUST00000227533 1041 ntBASIC19.74■□□□□ 0.75
Col1a1P11087 AC159093.1-201ENSMUST00000227779 380 ntBASIC19.74■□□□□ 0.75
Col1a1P11087 Aurkaip1-201ENSMUST00000084097 1159 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Col1a1P11087 Fam69a-201ENSMUST00000031198 2721 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Col1a1P11087 Kat14-201ENSMUST00000028911 3801 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Col1a1P11087 Arl4a-201ENSMUST00000101472 1200 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Col1a1P11087 Higd1b-202ENSMUST00000107072 497 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
Col1a1P11087 Higd1b-203ENSMUST00000107073 530 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
Col1a1P11087 Sec22b-202ENSMUST00000122288 1177 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Col1a1P11087 Higd1b-201ENSMUST00000021302 735 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Col1a1P11087 Slc25a2-201ENSMUST00000058635 1369 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
Col1a1P11087 AC154527.4-201ENSMUST00000224364 1667 ntBASIC19.73■□□□□ 0.75
Col1a1P11087 Myo16-204ENSMUST00000208309 2462 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Col1a1P11087 Bud23-201ENSMUST00000071677 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
Col1a1P11087 Htr5b-201ENSMUST00000055884 1935 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Col1a1P11087 Osbpl1a-207ENSMUST00000121808 3030 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Col1a1P11087 Fam129b-201ENSMUST00000028135 3714 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Col1a1P11087 Ints6-201ENSMUST00000053959 4993 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Col1a1P11087 Gm45144-201ENSMUST00000207473 354 ntTSL 5 BASIC19.73■□□□□ 0.75
Col1a1P11087 CT009713.7-201ENSMUST00000224689 571 ntBASIC19.73■□□□□ 0.75
Col1a1P11087 Nek4-204ENSMUST00000226833 1252 ntAPPRIS ALT2 BASIC19.73■□□□□ 0.75
Col1a1P11087 Cacng4-201ENSMUST00000021066 3500 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Col1a1P11087 Runx2-204ENSMUST00000159943 2316 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
Col1a1P11087 Itgb5-202ENSMUST00000115028 3090 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Col1a1P11087 Gm43042-201ENSMUST00000198676 1820 ntTSL 5 BASIC19.72■□□□□ 0.75
Col1a1P11087 Xkr6-201ENSMUST00000119973 2963 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Col1a1P11087 Ldlrad4-201ENSMUST00000063775 2493 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Col1a1P11087 Zdhhc5-201ENSMUST00000035840 4706 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Col1a1P11087 Gm26798-201ENSMUST00000181384 2837 ntTSL 5 BASIC19.72■□□□□ 0.75
Col1a1P11087 Otud7a-201ENSMUST00000058476 3483 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Col1a1P11087 Tmem44-204ENSMUST00000140402 2405 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Col1a1P11087 Krt23-201ENSMUST00000006969 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Col1a1P11087 Ccdc24-201ENSMUST00000106422 1365 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Col1a1P11087 Ch25h-201ENSMUST00000050562 1350 ntAPPRIS P1 BASIC19.72■□□□□ 0.75
Col1a1P11087 Get4-202ENSMUST00000110878 1180 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
Col1a1P11087 Gm15467-201ENSMUST00000120582 445 ntBASIC19.72■□□□□ 0.75
Col1a1P11087 Uba52-203ENSMUST00000125184 711 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Col1a1P11087 Lrr1-203ENSMUST00000222520 767 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Col1a1P11087 Apoa1-201ENSMUST00000034588 1035 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Col1a1P11087 Nrn1-201ENSMUST00000037623 1619 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Col1a1P11087 Acbd4-201ENSMUST00000024492 2075 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
Col1a1P11087 Tmem176a-201ENSMUST00000101426 1540 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Col1a1P11087 Cyp2w1-201ENSMUST00000031521 1512 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
Col1a1P11087 Lemd3-201ENSMUST00000119093 4370 ntAPPRIS ALT2 TSL 2 BASIC19.71■□□□□ 0.75
Col1a1P11087 Zdhhc6-201ENSMUST00000076891 2263 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Col1a1P11087 Tgfb1-201ENSMUST00000002678 2175 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Col1a1P11087 Cckbr-201ENSMUST00000033189 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Col1a1P11087 Cadps-204ENSMUST00000177814 5461 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
Col1a1P11087 Thap3-202ENSMUST00000105665 832 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Col1a1P11087 Gm16160-201ENSMUST00000160105 781 ntTSL 2 BASIC19.71■□□□□ 0.75
Retrieved 100 of 76,532 protein–RNA pairs in 20.5 ms