Protein–RNA interactions for Protein: M0QWN7

Usp35, Ubiquitin-specific peptidase 35, mousemouse

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp35M0QWN7 Nkx2-9-201ENSMUST00000072631 1264 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Usp35M0QWN7 Map3k7cl-201ENSMUST00000026700 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Usp35M0QWN7 Mpdu1-201ENSMUST00000018905 1321 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Usp35M0QWN7 Isyna1-201ENSMUST00000019283 1836 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Usp35M0QWN7 Rftn1-201ENSMUST00000044503 4029 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Usp35M0QWN7 Zbtb9-201ENSMUST00000120016 2798 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Usp35M0QWN7 Hmg20b-201ENSMUST00000020454 1621 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Usp35M0QWN7 Gm6093-201ENSMUST00000221792 1623 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Usp35M0QWN7 Mrpl9-201ENSMUST00000029786 1612 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Usp35M0QWN7 Kmt5b-202ENSMUST00000052699 3290 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
Usp35M0QWN7 Snx3-202ENSMUST00000105499 1057 ntTSL 5 BASIC18.13■□□□□ 0.49
Usp35M0QWN7 Cul4a-202ENSMUST00000121426 1044 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Usp35M0QWN7 Flg-203ENSMUST00000178695 777 ntAPPRIS P5 BASIC18.13■□□□□ 0.49
Usp35M0QWN7 Gm6345-202ENSMUST00000180900 204 ntBASIC18.13■□□□□ 0.49
Usp35M0QWN7 D230030E09Rik-201ENSMUST00000222459 884 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Usp35M0QWN7 Gm8994-201ENSMUST00000077886 1236 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
Usp35M0QWN7 Scube2-202ENSMUST00000106728 2890 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
Usp35M0QWN7 9930021J03Rik-204ENSMUST00000177155 6632 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
Usp35M0QWN7 Idnk-204ENSMUST00000226010 1898 ntBASIC18.13■□□□□ 0.49
Usp35M0QWN7 Nptn-212ENSMUST00000177292 1390 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
Usp35M0QWN7 Ptp4a2-201ENSMUST00000030578 3646 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
Usp35M0QWN7 Csf3-201ENSMUST00000038886 1413 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Usp35M0QWN7 Hmces-202ENSMUST00000113606 1572 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Usp35M0QWN7 4430402I18Rik-205ENSMUST00000162110 1559 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
Usp35M0QWN7 Garem1-201ENSMUST00000049260 4923 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Usp35M0QWN7 Dscr3-201ENSMUST00000023615 2547 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Usp35M0QWN7 Nelfb-201ENSMUST00000059849 2637 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Usp35M0QWN7 Dach1-201ENSMUST00000069334 5063 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Usp35M0QWN7 Il1rn-201ENSMUST00000114482 1986 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Usp35M0QWN7 Spint2-202ENSMUST00000108236 1211 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Usp35M0QWN7 Gm13474-201ENSMUST00000122466 815 ntBASIC18.12■□□□□ 0.49
Usp35M0QWN7 Fxyd5-208ENSMUST00000161805 1166 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
Usp35M0QWN7 Zfp524-201ENSMUST00000086349 1142 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Usp35M0QWN7 Krt6a-201ENSMUST00000023788 2256 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Usp35M0QWN7 Mpig6b-201ENSMUST00000097337 2252 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Usp35M0QWN7 Auh-202ENSMUST00000110031 3235 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Usp35M0QWN7 Gm17484-201ENSMUST00000167899 2322 ntTSL 2 BASIC18.12■□□□□ 0.49
Usp35M0QWN7 Kbtbd11-201ENSMUST00000069399 6973 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Usp35M0QWN7 Gtf3a-201ENSMUST00000132102 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Usp35M0QWN7 Adsl-204ENSMUST00000164806 1595 ntTSL 5 BASIC18.12■□□□□ 0.49
Usp35M0QWN7 Ric3-202ENSMUST00000120876 1633 ntAPPRIS ALT1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Usp35M0QWN7 Wisp2-201ENSMUST00000029188 1719 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Usp35M0QWN7 Klhdc8a-201ENSMUST00000046071 4269 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Usp35M0QWN7 Cdc14b-203ENSMUST00000109770 3052 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
Usp35M0QWN7 Sult2b1-204ENSMUST00000209739 1858 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
Usp35M0QWN7 Zmym3-206ENSMUST00000120107 5882 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
Usp35M0QWN7 Ube2d3-202ENSMUST00000166033 2504 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Usp35M0QWN7 Col15a1-202ENSMUST00000102917 5172 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Usp35M0QWN7 Cbarp-201ENSMUST00000105369 3121 ntAPPRIS P2 TSL 5 BASIC18.11■□□□□ 0.49
Usp35M0QWN7 Tekt5-202ENSMUST00000115831 1277 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
Usp35M0QWN7 Mir142hg-201ENSMUST00000123700 269 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Usp35M0QWN7 Gm27741-201ENSMUST00000185060 237 ntBASIC18.11■□□□□ 0.49
Usp35M0QWN7 Dctn3-201ENSMUST00000030158 973 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Usp35M0QWN7 Grcc10-201ENSMUST00000004389 863 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Usp35M0QWN7 Gfra4-202ENSMUST00000066958 783 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Usp35M0QWN7 Tbpl1-201ENSMUST00000095794 1195 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Usp35M0QWN7 Gm26781-201ENSMUST00000181385 1477 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Usp35M0QWN7 Disc1-208ENSMUST00000122389 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Usp35M0QWN7 Tra2a-204ENSMUST00000204189 1777 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Usp35M0QWN7 Irgc1-204ENSMUST00000205776 1835 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Usp35M0QWN7 Impdh1-210ENSMUST00000162739 2471 ntTSL 5 BASIC18.11■□□□□ 0.49
Usp35M0QWN7 Cacfd1-205ENSMUST00000114007 2689 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Usp35M0QWN7 Fmr1-201ENSMUST00000088546 4409 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Usp35M0QWN7 Trim24-201ENSMUST00000031859 4042 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
Usp35M0QWN7 Ociad2-202ENSMUST00000200776 2359 ntTSL 3 BASIC18.1■□□□□ 0.49
Usp35M0QWN7 Tmed4-201ENSMUST00000004508 2003 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Usp35M0QWN7 A230050P20Rik-201ENSMUST00000043911 1683 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Usp35M0QWN7 Gm9954-202ENSMUST00000198686 4725 ntBASIC18.1■□□□□ 0.49
Usp35M0QWN7 Ptges3l-202ENSMUST00000103102 1463 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Usp35M0QWN7 Tm7sf2-201ENSMUST00000025713 1471 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Usp35M0QWN7 Praf2-201ENSMUST00000033489 1339 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Usp35M0QWN7 Adamts17-202ENSMUST00000107478 6416 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
Usp35M0QWN7 Pih1d2-201ENSMUST00000000171 1256 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Usp35M0QWN7 Gm28793-201ENSMUST00000190845 413 ntTSL 5 BASIC18.1■□□□□ 0.49
Usp35M0QWN7 Efcab11-207ENSMUST00000223114 1122 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
Usp35M0QWN7 Pldi-201ENSMUST00000036304 853 ntTSL 2 BASIC18.1■□□□□ 0.49
Usp35M0QWN7 Hoxa6-201ENSMUST00000062829 874 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Usp35M0QWN7 Smim10l1-201ENSMUST00000100864 2842 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
Usp35M0QWN7 Arntl-203ENSMUST00000210074 2554 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Usp35M0QWN7 Dlgap1-209ENSMUST00000140728 2173 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
Usp35M0QWN7 Acbd4-201ENSMUST00000024492 2075 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
Usp35M0QWN7 Zc3h14-203ENSMUST00000110104 3146 ntTSL 5 BASIC18.09■□□□□ 0.49
Usp35M0QWN7 Naf1-201ENSMUST00000118009 2990 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Usp35M0QWN7 Galnt13-204ENSMUST00000112636 7530 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Usp35M0QWN7 Zswim8-201ENSMUST00000022358 6073 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
Usp35M0QWN7 Tm6sf2-202ENSMUST00000110160 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Usp35M0QWN7 Nsfl1c-201ENSMUST00000028949 1364 ntAPPRIS ALT1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Usp35M0QWN7 Card10-202ENSMUST00000164826 4726 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
Usp35M0QWN7 Hist1h2bf-201ENSMUST00000105106 461 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
Usp35M0QWN7 Eif4e2-205ENSMUST00000113232 1125 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Usp35M0QWN7 Muc2-203ENSMUST00000179227 399 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Usp35M0QWN7 Gm33142-201ENSMUST00000193913 867 ntBASIC18.09■□□□□ 0.49
Usp35M0QWN7 Fgf9-202ENSMUST00000074654 1198 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Usp35M0QWN7 Mfsd10-202ENSMUST00000114329 1906 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Usp35M0QWN7 Aire-204ENSMUST00000128241 1938 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
Usp35M0QWN7 Aire-205ENSMUST00000130972 1923 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
Usp35M0QWN7 Aire-212ENSMUST00000145975 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
Usp35M0QWN7 Gm15743-202ENSMUST00000182690 1901 ntBASIC18.09■□□□□ 0.49
Usp35M0QWN7 Aire-201ENSMUST00000019257 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
Usp35M0QWN7 Rnpc3-203ENSMUST00000106536 1839 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
Retrieved 100 of 76,532 protein–RNA pairs in 35.6 ms