Protein–RNA interactions for Protein: A2AX52

Col6a4, Collagen alpha-4(VI) chain, mousemouse

Predictions only

Length 2,309 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a4A2AX52 Nrn1l-202ENSMUST00000118920 603 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Col6a4A2AX52 Mtmr14-201ENSMUST00000113146 2676 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Col6a4A2AX52 Cenpw-201ENSMUST00000099985 1532 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Col6a4A2AX52 Arpc5-201ENSMUST00000077755 1914 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Col6a4A2AX52 Pgs1-203ENSMUST00000132676 2863 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Col6a4A2AX52 Zscan25-201ENSMUST00000094116 1796 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Col6a4A2AX52 Ppp2r1b-204ENSMUST00000174628 2195 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Col6a4A2AX52 5730507C01Rik-201ENSMUST00000063216 2431 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
Col6a4A2AX52 Pacsin2-203ENSMUST00000171436 3693 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
Col6a4A2AX52 Negr1-201ENSMUST00000041425 2095 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Col6a4A2AX52 Coro1a-201ENSMUST00000032949 1660 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Col6a4A2AX52 U2af2-201ENSMUST00000005041 2183 ntAPPRIS ALT1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Col6a4A2AX52 Gm1401-201ENSMUST00000122048 772 ntBASIC14.21□□□□□ -0.13
Col6a4A2AX52 2210408F21Rik-212ENSMUST00000152157 490 ntTSL 2 BASIC14.21□□□□□ -0.13
Col6a4A2AX52 Smarca5-ps-202ENSMUST00000171805 1284 ntBASIC14.21□□□□□ -0.13
Col6a4A2AX52 Hs3st2-202ENSMUST00000206880 1149 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Col6a4A2AX52 Gm33054-201ENSMUST00000216588 313 ntTSL 5 BASIC14.21□□□□□ -0.13
Col6a4A2AX52 Mrpl36-202ENSMUST00000221730 717 ntAPPRIS P1 TSL 3 BASIC14.21□□□□□ -0.13
Col6a4A2AX52 Ppp1r27-201ENSMUST00000026121 771 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Col6a4A2AX52 Lsmem1-201ENSMUST00000095760 1213 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Col6a4A2AX52 Zfp523-202ENSMUST00000073534 2654 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
Col6a4A2AX52 Gdf15-201ENSMUST00000003808 1545 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Col6a4A2AX52 Pou3f2-201ENSMUST00000178174 5587 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
Col6a4A2AX52 Dmtn-210ENSMUST00000228824 2377 ntBASIC14.21□□□□□ -0.14
Col6a4A2AX52 Negr1-203ENSMUST00000106065 1953 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
Col6a4A2AX52 Hdgfl3-202ENSMUST00000107305 5887 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.14
Col6a4A2AX52 Nfix-204ENSMUST00000109764 5476 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
Col6a4A2AX52 Ubxn11-202ENSMUST00000074690 1573 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.14
Col6a4A2AX52 Slc47a2-201ENSMUST00000093029 2377 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Col6a4A2AX52 Tha1-201ENSMUST00000033230 1770 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Col6a4A2AX52 Hhipl1-201ENSMUST00000021685 5174 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Col6a4A2AX52 Bean1-201ENSMUST00000093245 3199 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Col6a4A2AX52 2810408A11Rik-203ENSMUST00000102580 1640 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
Col6a4A2AX52 Noxa1-201ENSMUST00000044018 1617 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
Col6a4A2AX52 Pqlc1-208ENSMUST00000144468 1050 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Col6a4A2AX52 Tsen15-201ENSMUST00000015124 1133 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Col6a4A2AX52 Pafah1b3-207ENSMUST00000155118 679 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Col6a4A2AX52 Ccl27a-217ENSMUST00000155240 343 ntTSL 2 BASIC14.2□□□□□ -0.14
Col6a4A2AX52 Tdrkh-208ENSMUST00000200486 1231 ntTSL 3 BASIC14.2□□□□□ -0.14
Col6a4A2AX52 Sdhaf4-201ENSMUST00000027338 683 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Col6a4A2AX52 Tamm41-201ENSMUST00000032461 1168 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Col6a4A2AX52 Izumo1r-201ENSMUST00000034409 1291 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Col6a4A2AX52 Arfip1-202ENSMUST00000107687 1714 ntTSL 5 BASIC14.2□□□□□ -0.14
Col6a4A2AX52 Bcap29-201ENSMUST00000020979 1949 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Col6a4A2AX52 AC163637.2-201ENSMUST00000213826 1945 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
Col6a4A2AX52 Ccdc149-201ENSMUST00000059428 3295 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
Col6a4A2AX52 Clint1-202ENSMUST00000109261 3365 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
Col6a4A2AX52 Alkbh5-201ENSMUST00000044250 5730 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Col6a4A2AX52 Nsg1-201ENSMUST00000031009 2581 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Col6a4A2AX52 Gpr6-201ENSMUST00000061796 1786 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Col6a4A2AX52 Cacna1a-201ENSMUST00000121390 7926 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
Col6a4A2AX52 Asap2-204ENSMUST00000101562 5552 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Col6a4A2AX52 Sh3yl1-202ENSMUST00000110880 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Col6a4A2AX52 L3hypdh-201ENSMUST00000019862 1831 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Col6a4A2AX52 Polr3d-201ENSMUST00000000793 2016 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Col6a4A2AX52 0610040J01Rik-201ENSMUST00000081747 2008 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Col6a4A2AX52 Npcd-202ENSMUST00000089299 1453 ntAPPRIS P4 TSL 1 (best) BASIC14.2□□□□□ -0.14
Col6a4A2AX52 Lrp12-202ENSMUST00000110305 4244 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Col6a4A2AX52 Helt-201ENSMUST00000058636 1541 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Col6a4A2AX52 Coq5-201ENSMUST00000040421 2037 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Col6a4A2AX52 Snx5-202ENSMUST00000110030 2512 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Col6a4A2AX52 Ank1-207ENSMUST00000118733 8201 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Col6a4A2AX52 Wnt6-201ENSMUST00000006716 2071 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Col6a4A2AX52 Gcat-202ENSMUST00000171999 1763 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Col6a4A2AX52 Tuba3b-201ENSMUST00000087445 1775 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Col6a4A2AX52 Chchd7-205ENSMUST00000120732 711 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Col6a4A2AX52 Nek4-204ENSMUST00000226833 1252 ntAPPRIS ALT2 BASIC14.19□□□□□ -0.14
Col6a4A2AX52 Dnph1-201ENSMUST00000046497 1106 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Col6a4A2AX52 Tmem205-201ENSMUST00000046831 785 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Col6a4A2AX52 Smarcd2-201ENSMUST00000021052 2747 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Col6a4A2AX52 Trpc4ap-202ENSMUST00000103140 3091 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
Col6a4A2AX52 Ccdc3-201ENSMUST00000027988 2670 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Col6a4A2AX52 Creb3l1-201ENSMUST00000028663 2603 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Col6a4A2AX52 Srp68-201ENSMUST00000021133 2526 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Col6a4A2AX52 4930426D05Rik-202ENSMUST00000139804 1650 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Col6a4A2AX52 Dtnbp1-203ENSMUST00000220555 1589 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
Col6a4A2AX52 Nme3-201ENSMUST00000024978 715 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Col6a4A2AX52 Gm9925-201ENSMUST00000066583 483 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
Col6a4A2AX52 Rhog-201ENSMUST00000098230 1269 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Col6a4A2AX52 Pmpcb-201ENSMUST00000030882 1615 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Col6a4A2AX52 Shd-201ENSMUST00000044216 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Col6a4A2AX52 Prdm11-201ENSMUST00000111272 3012 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
Col6a4A2AX52 A730060N03Rik-201ENSMUST00000174277 2124 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Col6a4A2AX52 Panx1-202ENSMUST00000164273 5732 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Col6a4A2AX52 Rnf146-203ENSMUST00000160372 1948 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Col6a4A2AX52 Efemp2-204ENSMUST00000165485 1557 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Col6a4A2AX52 Tmem151b-201ENSMUST00000180252 4851 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Col6a4A2AX52 Slc35e3-201ENSMUST00000079041 3489 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Col6a4A2AX52 Slc7a10-201ENSMUST00000001854 1953 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Col6a4A2AX52 Mcub-204ENSMUST00000153506 1005 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Col6a4A2AX52 Gm19553-201ENSMUST00000175723 494 ntTSL 5 BASIC14.18□□□□□ -0.14
Col6a4A2AX52 2810030D12Rik-203ENSMUST00000190461 1039 ntBASIC14.18□□□□□ -0.14
Col6a4A2AX52 Rgp1-201ENSMUST00000030190 1292 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Col6a4A2AX52 Hist1h2bg-201ENSMUST00000079251 618 ntAPPRIS P1 BASIC14.18□□□□□ -0.14
Col6a4A2AX52 Hist1h2bn-201ENSMUST00000091709 381 ntAPPRIS P1 BASIC14.18□□□□□ -0.14
Col6a4A2AX52 Olfr1232-201ENSMUST00000099785 936 ntAPPRIS P1 BASIC14.18□□□□□ -0.14
Col6a4A2AX52 Mthfd2-201ENSMUST00000005810 2085 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Col6a4A2AX52 4933402J07Rik-201ENSMUST00000093342 1304 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Col6a4A2AX52 Ern1-204ENSMUST00000106801 1957 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Col6a4A2AX52 Dtx3-202ENSMUST00000116229 1994 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 60 ms