Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Gm24229-201ENSMUST00000158830 118 ntBASIC1,22□□□□□ -2,21
Col28a1Q2UY11 Ranbp2-ps1-201ENSMUST00000184001 403 ntBASIC1,22□□□□□ -2,21
Col28a1Q2UY11 Gm27365-201ENSMUST00000184041 177 ntBASIC1,22□□□□□ -2,21
Col28a1Q2UY11 Gm27419-201ENSMUST00000184576 109 ntBASIC1,22□□□□□ -2,21
Col28a1Q2UY11 Gm27639-201ENSMUST00000184937 85 ntBASIC1,22□□□□□ -2,21
Col28a1Q2UY11 Gm28862-201ENSMUST00000188246 163 ntBASIC1,22□□□□□ -2,21
Col28a1Q2UY11 Gm25635-201ENSMUST00000082675 131 ntBASIC1,22□□□□□ -2,21
Col28a1Q2UY11 Gm23468-201ENSMUST00000157125 108 ntBASIC1,21□□□□□ -2,22
Col28a1Q2UY11 Gm23106-201ENSMUST00000157554 101 ntBASIC1,21□□□□□ -2,22
Col28a1Q2UY11 Gm25014-201ENSMUST00000158401 103 ntBASIC1,21□□□□□ -2,22
Col28a1Q2UY11 Gm22887-201ENSMUST00000178586 107 ntBASIC1,21□□□□□ -2,22
Col28a1Q2UY11 Gm25229-201ENSMUST00000178587 79 ntBASIC1,21□□□□□ -2,22
Col28a1Q2UY11 Gm27656-201ENSMUST00000185055 80 ntBASIC1,21□□□□□ -2,22
Col28a1Q2UY11 Gm24203-201ENSMUST00000082949 114 ntBASIC1,21□□□□□ -2,22
Col28a1Q2UY11 Gm22780-201ENSMUST00000104084 132 ntBASIC1,2□□□□□ -2,22
Col28a1Q2UY11 Gm22677-201ENSMUST00000116977 108 ntBASIC1,2□□□□□ -2,22
Col28a1Q2UY11 Mir1899-201ENSMUST00000122798 96 ntBASIC1,2□□□□□ -2,22
Col28a1Q2UY11 Gm22485-201ENSMUST00000157990 109 ntBASIC1,2□□□□□ -2,22
Col28a1Q2UY11 Gm23636-201ENSMUST00000175070 95 ntBASIC1,2□□□□□ -2,22
Col28a1Q2UY11 Gm22929-201ENSMUST00000175517 107 ntBASIC1,2□□□□□ -2,22
Col28a1Q2UY11 Gm23419-201ENSMUST00000175523 84 ntBASIC1,2□□□□□ -2,22
Col28a1Q2UY11 Gm21905-201ENSMUST00000177616 87 ntAPPRIS P1 TSL 5 BASIC1,2□□□□□ -2,22
Col28a1Q2UY11 Gm27686-201ENSMUST00000185123 91 ntBASIC1,2□□□□□ -2,22
Col28a1Q2UY11 Gm3702-201ENSMUST00000211754 346 ntBASIC1,2□□□□□ -2,22
Col28a1Q2UY11 Gm25650-201ENSMUST00000083784 162 ntBASIC1,2□□□□□ -2,22
Col28a1Q2UY11 Gm43960-201ENSMUST00000204249 5020 ntBASIC1,2□□□□□ -2,22
Col28a1Q2UY11 Gm23900-201ENSMUST00000157569 108 ntBASIC1,19□□□□□ -2,22
Col28a1Q2UY11 Gm24399-201ENSMUST00000157869 74 ntBASIC1,19□□□□□ -2,22
Col28a1Q2UY11 Gm17172-201ENSMUST00000171782 190 ntTSL 3 BASIC1,19□□□□□ -2,22
Col28a1Q2UY11 Mir6394-201ENSMUST00000184738 99 ntBASIC1,19□□□□□ -2,22
Col28a1Q2UY11 Gm45197-201ENSMUST00000205288 151 ntBASIC1,19□□□□□ -2,22
Col28a1Q2UY11 Snord1a-201ENSMUST00000083160 74 ntBASIC1,19□□□□□ -2,22
Col28a1Q2UY11 Mir92-2-201ENSMUST00000083679 91 ntBASIC1,19□□□□□ -2,22
Col28a1Q2UY11 Mir653-201ENSMUST00000102402 85 ntBASIC1,18□□□□□ -2,22
Col28a1Q2UY11 Gm11694-201ENSMUST00000118637 159 ntBASIC1,18□□□□□ -2,22
Col28a1Q2UY11 Gm11857-201ENSMUST00000119817 324 ntBASIC1,18□□□□□ -2,22
Col28a1Q2UY11 Gm24593-201ENSMUST00000122507 106 ntBASIC1,18□□□□□ -2,22
Col28a1Q2UY11 Gm26363-201ENSMUST00000158866 83 ntBASIC1,18□□□□□ -2,22
Col28a1Q2UY11 Gm23340-201ENSMUST00000158955 123 ntBASIC1,18□□□□□ -2,22
Col28a1Q2UY11 Mir7675-201ENSMUST00000184262 58 ntBASIC1,18□□□□□ -2,22
Col28a1Q2UY11 Olfr820-202ENSMUST00000214917 4701 ntAPPRIS P1 TSL 5 BASIC1,18□□□□□ -2,22
Col28a1Q2UY11 Olfr805-203ENSMUST00000216794 3199 ntAPPRIS P1 TSL 5 BASIC1,17□□□□□ -2,22
Col28a1Q2UY11 Snord71-201ENSMUST00000104361 85 ntBASIC1,17□□□□□ -2,22
Col28a1Q2UY11 Gm26133-201ENSMUST00000157363 100 ntBASIC1,17□□□□□ -2,22
Col28a1Q2UY11 Gm24728-201ENSMUST00000158226 125 ntBASIC1,17□□□□□ -2,22
Col28a1Q2UY11 Gm24946-201ENSMUST00000158332 106 ntBASIC1,17□□□□□ -2,22
Col28a1Q2UY11 Mir1954-201ENSMUST00000175595 86 ntBASIC1,17□□□□□ -2,22
Col28a1Q2UY11 Gm27711-201ENSMUST00000183802 118 ntBASIC1,17□□□□□ -2,22
Col28a1Q2UY11 Gm22980-201ENSMUST00000082608 70 ntBASIC1,17□□□□□ -2,22
Col28a1Q2UY11 Gm22809-201ENSMUST00000082743 156 ntBASIC1,17□□□□□ -2,22
Col28a1Q2UY11 Snord60-201ENSMUST00000082834 78 ntBASIC1,17□□□□□ -2,22
Col28a1Q2UY11 Mir196b-201ENSMUST00000083509 85 ntBASIC1,17□□□□□ -2,22
Col28a1Q2UY11 Mir211-201ENSMUST00000083651 106 ntBASIC1,17□□□□□ -2,22
Col28a1Q2UY11 Gm25629-201ENSMUST00000084001 107 ntBASIC1,17□□□□□ -2,22
Col28a1Q2UY11 Gm25061-201ENSMUST00000104665 107 ntBASIC1,16□□□□□ -2,22
Col28a1Q2UY11 Gm22205-201ENSMUST00000122655 71 ntBASIC1,16□□□□□ -2,22
Col28a1Q2UY11 Gm26038-201ENSMUST00000158151 106 ntBASIC1,16□□□□□ -2,22
Col28a1Q2UY11 Mir1950-201ENSMUST00000158526 74 ntBASIC1,16□□□□□ -2,22
Col28a1Q2UY11 Mir7063-201ENSMUST00000184158 91 ntBASIC1,16□□□□□ -2,22
Col28a1Q2UY11 Gm42506-201ENSMUST00000202009 150 ntBASIC1,16□□□□□ -2,22
Col28a1Q2UY11 Gm44602-201ENSMUST00000205948 132 ntBASIC1,16□□□□□ -2,22
Col28a1Q2UY11 Olfr820-203ENSMUST00000215791 3956 ntAPPRIS P1 TSL 5 BASIC1,15□□□□□ -2,23
Col28a1Q2UY11 Gm23482-201ENSMUST00000104172 122 ntBASIC1,15□□□□□ -2,23
Col28a1Q2UY11 Gm25496-201ENSMUST00000104430 120 ntBASIC1,15□□□□□ -2,23
Col28a1Q2UY11 Gm25495-201ENSMUST00000104431 131 ntBASIC1,15□□□□□ -2,23
Col28a1Q2UY11 Gm23881-201ENSMUST00000116872 66 ntBASIC1,15□□□□□ -2,23
Col28a1Q2UY11 Gm12469-201ENSMUST00000117623 207 ntBASIC1,15□□□□□ -2,23
Col28a1Q2UY11 Gm25663-201ENSMUST00000157698 135 ntBASIC1,15□□□□□ -2,23
Col28a1Q2UY11 Gm27975-201ENSMUST00000184400 101 ntBASIC1,15□□□□□ -2,23
Col28a1Q2UY11 Gm44948-201ENSMUST00000209050 149 ntBASIC1,15□□□□□ -2,23
Col28a1Q2UY11 Gm25696-201ENSMUST00000082900 105 ntBASIC1,15□□□□□ -2,23
Col28a1Q2UY11 Gm25759-201ENSMUST00000103988 129 ntBASIC1,14□□□□□ -2,23
Col28a1Q2UY11 Gm23528-201ENSMUST00000104571 132 ntBASIC1,14□□□□□ -2,23
Col28a1Q2UY11 Gm14923-201ENSMUST00000118270 155 ntBASIC1,14□□□□□ -2,23
Col28a1Q2UY11 Gm24183-201ENSMUST00000122572 93 ntBASIC1,14□□□□□ -2,23
Col28a1Q2UY11 Gm24384-201ENSMUST00000122693 75 ntBASIC1,14□□□□□ -2,23
Col28a1Q2UY11 Mir1904-201ENSMUST00000122702 80 ntBASIC1,14□□□□□ -2,23
Col28a1Q2UY11 Gm25901-201ENSMUST00000158494 130 ntBASIC1,14□□□□□ -2,23
Col28a1Q2UY11 Gm26029-201ENSMUST00000158659 132 ntBASIC1,14□□□□□ -2,23
Col28a1Q2UY11 Mir468-201ENSMUST00000197332 78 ntBASIC1,14□□□□□ -2,23
Col28a1Q2UY11 Gm24252-201ENSMUST00000083700 132 ntBASIC1,14□□□□□ -2,23
Col28a1Q2UY11 Gm24342-201ENSMUST00000103907 104 ntBASIC1,13□□□□□ -2,23
Col28a1Q2UY11 Mir1187-201ENSMUST00000116936 122 ntBASIC1,13□□□□□ -2,23
Col28a1Q2UY11 Polr2k-ps-201ENSMUST00000120170 175 ntBASIC1,13□□□□□ -2,23
Col28a1Q2UY11 Snora26-201ENSMUST00000175614 121 ntBASIC1,13□□□□□ -2,23
Col28a1Q2UY11 Mir6985-201ENSMUST00000184641 61 ntBASIC1,13□□□□□ -2,23
Col28a1Q2UY11 Gm22458-201ENSMUST00000082576 107 ntBASIC1,13□□□□□ -2,23
Col28a1Q2UY11 Gm25644-201ENSMUST00000083209 107 ntBASIC1,13□□□□□ -2,23
Col28a1Q2UY11 Mir5117-201ENSMUST00000083226 84 ntBASIC1,13□□□□□ -2,23
Col28a1Q2UY11 Gm24494-201ENSMUST00000083804 81 ntBASIC1,13□□□□□ -2,23
Col28a1Q2UY11 Vmn1r75-204ENSMUST00000227611 4336 ntAPPRIS ALT2 BASIC1,12□□□□□ -2,23
Col28a1Q2UY11 Gm22544-201ENSMUST00000104349 127 ntBASIC1,12□□□□□ -2,23
Col28a1Q2UY11 n-R5s70-201ENSMUST00000122650 116 ntBASIC1,12□□□□□ -2,23
Col28a1Q2UY11 Gm23715-201ENSMUST00000157354 106 ntBASIC1,12□□□□□ -2,23
Col28a1Q2UY11 Gm24686-201ENSMUST00000157755 93 ntBASIC1,12□□□□□ -2,23
Col28a1Q2UY11 Gm22732-201ENSMUST00000158093 121 ntBASIC1,12□□□□□ -2,23
Col28a1Q2UY11 Gm25768-201ENSMUST00000158570 98 ntBASIC1,12□□□□□ -2,23
Col28a1Q2UY11 Gm24674-201ENSMUST00000179194 104 ntBASIC1,12□□□□□ -2,23
Col28a1Q2UY11 Mir200b-201ENSMUST00000083615 70 ntBASIC1,12□□□□□ -2,23
Col28a1Q2UY11 Gm24915-201ENSMUST00000157288 78 ntBASIC1,11□□□□□ -2,23
Retrieved 100 of 76,532 protein–RNA pairs in 94,4 ms