Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Gm25992-201ENSMUST00000102437 109 ntBASIC1.43□□□□□ -2.18
Col28a1Q2UY11 Traj52-201ENSMUST00000103691 66 ntAPPRIS P1 BASIC1.43□□□□□ -2.18
Col28a1Q2UY11 Gm25329-201ENSMUST00000158041 126 ntBASIC1.43□□□□□ -2.18
Col28a1Q2UY11 Gm25370-201ENSMUST00000158159 94 ntBASIC1.43□□□□□ -2.18
Col28a1Q2UY11 Gm24880-201ENSMUST00000158776 85 ntBASIC1.43□□□□□ -2.18
Col28a1Q2UY11 Gm24366-201ENSMUST00000175383 86 ntBASIC1.43□□□□□ -2.18
Col28a1Q2UY11 Gm23375-201ENSMUST00000175407 83 ntBASIC1.43□□□□□ -2.18
Col28a1Q2UY11 Gm26109-201ENSMUST00000083970 70 ntBASIC1.43□□□□□ -2.18
Col28a1Q2UY11 Olfr8-203ENSMUST00000214952 3407 ntAPPRIS P1 TSL 5 BASIC1.42□□□□□ -2.18
Col28a1Q2UY11 Mir802-201ENSMUST00000103258 97 ntBASIC1.42□□□□□ -2.18
Col28a1Q2UY11 Gm26082-201ENSMUST00000104070 127 ntBASIC1.42□□□□□ -2.18
Col28a1Q2UY11 Gm22706-201ENSMUST00000157907 112 ntBASIC1.42□□□□□ -2.18
Col28a1Q2UY11 Gm25011-201ENSMUST00000158398 126 ntBASIC1.42□□□□□ -2.18
Col28a1Q2UY11 Gm23349-201ENSMUST00000158432 98 ntBASIC1.42□□□□□ -2.18
Col28a1Q2UY11 Gm22943-201ENSMUST00000158564 76 ntBASIC1.42□□□□□ -2.18
Col28a1Q2UY11 Gm25044-201ENSMUST00000158603 104 ntBASIC1.42□□□□□ -2.18
Col28a1Q2UY11 Gm16550-201ENSMUST00000162550 126 ntBASIC1.42□□□□□ -2.18
Col28a1Q2UY11 Gm25949-201ENSMUST00000175333 114 ntBASIC1.42□□□□□ -2.18
Col28a1Q2UY11 Gm25633-201ENSMUST00000178565 107 ntBASIC1.42□□□□□ -2.18
Col28a1Q2UY11 Gm42935-201ENSMUST00000202004 151 ntBASIC1.42□□□□□ -2.18
Col28a1Q2UY11 Gm22805-201ENSMUST00000082739 107 ntBASIC1.42□□□□□ -2.18
Col28a1Q2UY11 Traj26-201ENSMUST00000103715 60 ntAPPRIS P1 BASIC1.41□□□□□ -2.18
Col28a1Q2UY11 Gm23208-201ENSMUST00000158666 127 ntBASIC1.41□□□□□ -2.18
Col28a1Q2UY11 Gm17215-201ENSMUST00000170074 277 ntTSL 3 BASIC1.41□□□□□ -2.18
Col28a1Q2UY11 Mir3968-201ENSMUST00000175355 100 ntBASIC1.41□□□□□ -2.18
Col28a1Q2UY11 Gm22069-201ENSMUST00000179911 107 ntBASIC1.41□□□□□ -2.18
Col28a1Q2UY11 AC140930.2-201ENSMUST00000221803 109 ntBASIC1.41□□□□□ -2.18
Col28a1Q2UY11 Gm24697-201ENSMUST00000083881 107 ntBASIC1.41□□□□□ -2.18
Col28a1Q2UY11 Gm44240-201ENSMUST00000204015 2654 ntBASIC1.4□□□□□ -2.19
Col28a1Q2UY11 Gm16539-201ENSMUST00000160086 327 ntBASIC1.4□□□□□ -2.19
Col28a1Q2UY11 Snord87-201ENSMUST00000175437 87 ntBASIC1.4□□□□□ -2.19
Col28a1Q2UY11 Mir7683-201ENSMUST00000183842 61 ntBASIC1.4□□□□□ -2.19
Col28a1Q2UY11 Gm27894-201ENSMUST00000184177 92 ntBASIC1.4□□□□□ -2.19
Col28a1Q2UY11 Ighv1-23-201ENSMUST00000194625 351 ntAPPRIS P1 BASIC1.4□□□□□ -2.19
Col28a1Q2UY11 Gm44384-201ENSMUST00000200208 114 ntBASIC1.4□□□□□ -2.19
Col28a1Q2UY11 Mir221-201ENSMUST00000083488 95 ntBASIC1.4□□□□□ -2.19
Col28a1Q2UY11 Snord80-201ENSMUST00000083801 81 ntBASIC1.4□□□□□ -2.19
Col28a1Q2UY11 Gm25045-201ENSMUST00000122670 99 ntBASIC1.39□□□□□ -2.19
Col28a1Q2UY11 Gm22515-201ENSMUST00000158273 305 ntBASIC1.39□□□□□ -2.19
Col28a1Q2UY11 Gm22089-201ENSMUST00000158336 102 ntBASIC1.39□□□□□ -2.19
Col28a1Q2UY11 AC122327.1-201ENSMUST00000220778 108 ntBASIC1.39□□□□□ -2.19
Col28a1Q2UY11 AC132833.2-201ENSMUST00000228699 157 ntBASIC1.39□□□□□ -2.19
Col28a1Q2UY11 Gm24805-201ENSMUST00000082931 104 ntBASIC1.39□□□□□ -2.19
Col28a1Q2UY11 Mir654-201ENSMUST00000104787 84 ntBASIC1.38□□□□□ -2.19
Col28a1Q2UY11 Gm23336-201ENSMUST00000117023 123 ntBASIC1.38□□□□□ -2.19
Col28a1Q2UY11 Gm15654-201ENSMUST00000152660 300 ntBASIC1.38□□□□□ -2.19
Col28a1Q2UY11 Gm23838-201ENSMUST00000158067 162 ntBASIC1.38□□□□□ -2.19
Col28a1Q2UY11 Gm23261-201ENSMUST00000158316 136 ntBASIC1.38□□□□□ -2.19
Col28a1Q2UY11 Gm22503-201ENSMUST00000158983 115 ntBASIC1.38□□□□□ -2.19
Col28a1Q2UY11 Mir3057-201ENSMUST00000175040 91 ntBASIC1.38□□□□□ -2.19
Col28a1Q2UY11 Gm25958-201ENSMUST00000175114 71 ntBASIC1.38□□□□□ -2.19
Col28a1Q2UY11 Mir8119-201ENSMUST00000183371 129 ntBASIC1.38□□□□□ -2.19
Col28a1Q2UY11 Trbv25-201ENSMUST00000194700 273 ntBASIC1.38□□□□□ -2.19
Col28a1Q2UY11 Zfp600-201ENSMUST00000092750 4154 ntAPPRIS P1 TSL 1 (best) BASIC1.37□□□□□ -2.19
Col28a1Q2UY11 Pcdh11x-208ENSMUST00000193899 5394 ntAPPRIS ALT2 TSL 5 BASIC1.37□□□□□ -2.19
Col28a1Q2UY11 Gm23065-201ENSMUST00000158236 130 ntBASIC1.37□□□□□ -2.19
Col28a1Q2UY11 AC141438.3-201ENSMUST00000215632 202 ntBASIC1.37□□□□□ -2.19
Col28a1Q2UY11 AC159093.2-201ENSMUST00000227881 297 ntBASIC1.37□□□□□ -2.19
Col28a1Q2UY11 Gm22673-201ENSMUST00000104415 131 ntBASIC1.36□□□□□ -2.19
Col28a1Q2UY11 Gm22071-201ENSMUST00000116857 83 ntBASIC1.36□□□□□ -2.19
Col28a1Q2UY11 Gm25112-201ENSMUST00000122680 104 ntBASIC1.36□□□□□ -2.19
Col28a1Q2UY11 Gm11749-201ENSMUST00000127327 184 ntTSL 2 BASIC1.36□□□□□ -2.19
Col28a1Q2UY11 Gm25838-201ENSMUST00000158920 120 ntBASIC1.36□□□□□ -2.19
Col28a1Q2UY11 Selenok-ps4-201ENSMUST00000178835 277 ntBASIC1.36□□□□□ -2.19
Col28a1Q2UY11 AC139186.1-201ENSMUST00000197610 94 ntBASIC1.36□□□□□ -2.19
Col28a1Q2UY11 Mir6962-201ENSMUST00000199512 63 ntBASIC1.36□□□□□ -2.19
Col28a1Q2UY11 AC153950.1-201ENSMUST00000219916 3238 ntBASIC1.36□□□□□ -2.19
Col28a1Q2UY11 Gm25337-201ENSMUST00000083723 104 ntBASIC1.36□□□□□ -2.19
Col28a1Q2UY11 Gm22672-201ENSMUST00000104414 134 ntBASIC1.35□□□□□ -2.19
Col28a1Q2UY11 Gm12432-201ENSMUST00000119540 186 ntBASIC1.35□□□□□ -2.19
Col28a1Q2UY11 Gm23788-201ENSMUST00000122535 106 ntBASIC1.35□□□□□ -2.19
Col28a1Q2UY11 Gm26369-201ENSMUST00000157825 100 ntBASIC1.35□□□□□ -2.19
Col28a1Q2UY11 Gm22200-201ENSMUST00000158614 67 ntBASIC1.35□□□□□ -2.19
Col28a1Q2UY11 Snora24-201ENSMUST00000174989 130 ntBASIC1.35□□□□□ -2.19
Col28a1Q2UY11 Mir5104-201ENSMUST00000175319 94 ntBASIC1.35□□□□□ -2.19
Col28a1Q2UY11 Mir5619-201ENSMUST00000176065 61 ntBASIC1.35□□□□□ -2.19
Col28a1Q2UY11 Gm24801-201ENSMUST00000178503 105 ntBASIC1.35□□□□□ -2.19
Col28a1Q2UY11 Gm25449-201ENSMUST00000179389 79 ntBASIC1.35□□□□□ -2.19
Col28a1Q2UY11 CT485608.2-201ENSMUST00000227210 291 ntBASIC1.35□□□□□ -2.19
Col28a1Q2UY11 Mir1a-1-201ENSMUST00000093635 77 ntBASIC1.35□□□□□ -2.19
Col28a1Q2UY11 Olfr618-202ENSMUST00000214883 3304 ntAPPRIS P1 TSL 5 BASIC1.35□□□□□ -2.19
Col28a1Q2UY11 Gm26425-201ENSMUST00000122529 82 ntBASIC1.34□□□□□ -2.19
Col28a1Q2UY11 Gm23122-201ENSMUST00000157645 103 ntBASIC1.34□□□□□ -2.19
Col28a1Q2UY11 Gm23558-201ENSMUST00000157823 80 ntBASIC1.34□□□□□ -2.19
Col28a1Q2UY11 Gm23369-201ENSMUST00000175406 105 ntBASIC1.34□□□□□ -2.19
Col28a1Q2UY11 Mir6240-201ENSMUST00000184281 117 ntBASIC1.34□□□□□ -2.19
Col28a1Q2UY11 Gm28256-201ENSMUST00000188953 139 ntBASIC1.34□□□□□ -2.19
Col28a1Q2UY11 Gm28559-201ENSMUST00000190532 139 ntBASIC1.34□□□□□ -2.19
Col28a1Q2UY11 Mir30f-201ENSMUST00000196073 92 ntBASIC1.34□□□□□ -2.19
Col28a1Q2UY11 AC127302.3-201ENSMUST00000215480 2791 ntBASIC1.34□□□□□ -2.2
Col28a1Q2UY11 Gm44560-201ENSMUST00000207816 3115 ntBASIC1.33□□□□□ -2.2
Col28a1Q2UY11 Mir20b-201ENSMUST00000102087 80 ntBASIC1.33□□□□□ -2.2
Col28a1Q2UY11 Gm24262-201ENSMUST00000157431 144 ntBASIC1.33□□□□□ -2.2
Col28a1Q2UY11 Mir6369-201ENSMUST00000183772 106 ntBASIC1.33□□□□□ -2.2
Col28a1Q2UY11 Gm28398-201ENSMUST00000186587 166 ntTSL 5 BASIC1.33□□□□□ -2.2
Col28a1Q2UY11 Gm29653-201ENSMUST00000187192 166 ntTSL 5 BASIC1.33□□□□□ -2.2
Col28a1Q2UY11 Gm28810-201ENSMUST00000188173 166 ntTSL 5 BASIC1.33□□□□□ -2.2
Col28a1Q2UY11 Gm28575-201ENSMUST00000188234 166 ntTSL 5 BASIC1.33□□□□□ -2.2
Col28a1Q2UY11 Gm28132-201ENSMUST00000189901 166 ntTSL 5 BASIC1.33□□□□□ -2.2
Col28a1Q2UY11 Gm29580-201ENSMUST00000189921 166 ntTSL 5 BASIC1.33□□□□□ -2.2
Retrieved 100 of 76,532 protein–RNA pairs in 133.3 ms