Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Gm28794-201ENSMUST00000185276 136 ntBASIC1.54□□□□□ -2.16
Col28a1Q2UY11 Gm45471-201ENSMUST00000211270 281 ntBASIC1.54□□□□□ -2.16
Col28a1Q2UY11 Gm25851-201ENSMUST00000082794 107 ntBASIC1.54□□□□□ -2.16
Col28a1Q2UY11 AC133934.2-201ENSMUST00000221729 4129 ntBASIC1.54□□□□□ -2.16
Col28a1Q2UY11 Fau-ps1-201ENSMUST00000119675 252 ntBASIC1.53□□□□□ -2.16
Col28a1Q2UY11 Ppp4r3c-ps-201ENSMUST00000151416 2445 ntBASIC1.53□□□□□ -2.16
Col28a1Q2UY11 Gm24649-201ENSMUST00000157106 134 ntBASIC1.53□□□□□ -2.16
Col28a1Q2UY11 Gm22319-201ENSMUST00000157147 122 ntBASIC1.53□□□□□ -2.16
Col28a1Q2UY11 Gm26090-201ENSMUST00000157897 128 ntBASIC1.53□□□□□ -2.16
Col28a1Q2UY11 Gm23384-201ENSMUST00000158593 103 ntBASIC1.53□□□□□ -2.16
Col28a1Q2UY11 Traj61-201ENSMUST00000165025 72 ntBASIC1.53□□□□□ -2.16
Col28a1Q2UY11 Mir3471-1-201ENSMUST00000175139 131 ntBASIC1.53□□□□□ -2.16
Col28a1Q2UY11 Snord50a-201ENSMUST00000178154 72 ntBASIC1.53□□□□□ -2.16
Col28a1Q2UY11 Gm24463-201ENSMUST00000178417 72 ntBASIC1.53□□□□□ -2.16
Col28a1Q2UY11 Gm27265-201ENSMUST00000183559 77 ntBASIC1.53□□□□□ -2.16
Col28a1Q2UY11 Gm28383-201ENSMUST00000187563 139 ntBASIC1.53□□□□□ -2.16
Col28a1Q2UY11 Gm19194-201ENSMUST00000192015 3774 ntBASIC1.53□□□□□ -2.16
Col28a1Q2UY11 Snora3-201ENSMUST00000083082 132 ntBASIC1.53□□□□□ -2.16
Col28a1Q2UY11 Gm25680-201ENSMUST00000116917 126 ntBASIC1.52□□□□□ -2.17
Col28a1Q2UY11 Gm22635-201ENSMUST00000116962 126 ntBASIC1.52□□□□□ -2.17
Col28a1Q2UY11 Gm14882-201ENSMUST00000117216 218 ntBASIC1.52□□□□□ -2.17
Col28a1Q2UY11 Gm24902-201ENSMUST00000158126 123 ntBASIC1.52□□□□□ -2.17
Col28a1Q2UY11 Gm25831-201ENSMUST00000158924 163 ntBASIC1.52□□□□□ -2.17
Col28a1Q2UY11 Gm29535-201ENSMUST00000185723 109 ntBASIC1.52□□□□□ -2.17
Col28a1Q2UY11 Gm28143-201ENSMUST00000191082 109 ntBASIC1.52□□□□□ -2.17
Col28a1Q2UY11 Gm44962-201ENSMUST00000206460 279 ntBASIC1.52□□□□□ -2.17
Col28a1Q2UY11 Hspe1-ps2-201ENSMUST00000051437 312 ntBASIC1.52□□□□□ -2.17
Col28a1Q2UY11 Mir451a-201ENSMUST00000093557 72 ntBASIC1.52□□□□□ -2.17
Col28a1Q2UY11 Gm18795-202ENSMUST00000223373 2920 ntBASIC1.51□□□□□ -2.17
Col28a1Q2UY11 Gm23060-201ENSMUST00000102345 109 ntBASIC1.51□□□□□ -2.17
Col28a1Q2UY11 Gm22033-201ENSMUST00000116947 90 ntBASIC1.51□□□□□ -2.17
Col28a1Q2UY11 Zfp969-202ENSMUST00000131041 252 ntTSL 2 BASIC1.51□□□□□ -2.17
Col28a1Q2UY11 Gm26181-201ENSMUST00000157687 106 ntBASIC1.51□□□□□ -2.17
Col28a1Q2UY11 Gm22729-201ENSMUST00000158088 129 ntBASIC1.51□□□□□ -2.17
Col28a1Q2UY11 Gm25994-201ENSMUST00000175392 101 ntBASIC1.51□□□□□ -2.17
Col28a1Q2UY11 Gm26466-201ENSMUST00000179615 79 ntBASIC1.51□□□□□ -2.17
Col28a1Q2UY11 Gm27326-201ENSMUST00000183504 95 ntBASIC1.51□□□□□ -2.17
Col28a1Q2UY11 Gm18433-201ENSMUST00000192747 197 ntBASIC1.51□□□□□ -2.17
Col28a1Q2UY11 Gm42795-201ENSMUST00000198847 76 ntBASIC1.51□□□□□ -2.17
Col28a1Q2UY11 Snord43-201ENSMUST00000199549 108 ntBASIC1.51□□□□□ -2.17
Col28a1Q2UY11 AC158598.2-201ENSMUST00000213397 3832 ntBASIC1.5□□□□□ -2.17
Col28a1Q2UY11 Gm23986-201ENSMUST00000157144 63 ntBASIC1.5□□□□□ -2.17
Col28a1Q2UY11 Gm22963-201ENSMUST00000157960 91 ntBASIC1.5□□□□□ -2.17
Col28a1Q2UY11 Gm25750-201ENSMUST00000175483 112 ntBASIC1.5□□□□□ -2.17
Col28a1Q2UY11 AC134601.3-201ENSMUST00000221682 154 ntBASIC1.5□□□□□ -2.17
Col28a1Q2UY11 Gm24524-201ENSMUST00000082925 170 ntBASIC1.5□□□□□ -2.17
Col28a1Q2UY11 Mir151-201ENSMUST00000083678 68 ntBASIC1.5□□□□□ -2.17
Col28a1Q2UY11 Gm22149-201ENSMUST00000104442 136 ntBASIC1.49□□□□□ -2.17
Col28a1Q2UY11 Gm14947-201ENSMUST00000133704 303 ntBASIC1.49□□□□□ -2.17
Col28a1Q2UY11 Gm23996-201ENSMUST00000158062 131 ntBASIC1.49□□□□□ -2.17
Col28a1Q2UY11 Mir7241-201ENSMUST00000184532 64 ntBASIC1.49□□□□□ -2.17
Col28a1Q2UY11 Gm25681-201ENSMUST00000083938 106 ntBASIC1.49□□□□□ -2.17
Col28a1Q2UY11 Olfr1222-203ENSMUST00000215816 3796 ntAPPRIS P1 TSL 5 BASIC1.49□□□□□ -2.17
Col28a1Q2UY11 Gm25610-201ENSMUST00000104016 129 ntBASIC1.48□□□□□ -2.17
Col28a1Q2UY11 Gm22679-201ENSMUST00000116975 100 ntBASIC1.48□□□□□ -2.17
Col28a1Q2UY11 n-R5s39-201ENSMUST00000122613 108 ntBASIC1.48□□□□□ -2.17
Col28a1Q2UY11 Mir1949-201ENSMUST00000157434 141 ntBASIC1.48□□□□□ -2.17
Col28a1Q2UY11 Gm22815-201ENSMUST00000157451 62 ntBASIC1.48□□□□□ -2.17
Col28a1Q2UY11 Gm26213-201ENSMUST00000158582 110 ntBASIC1.48□□□□□ -2.17
Col28a1Q2UY11 Gm43977-201ENSMUST00000203970 189 ntBASIC1.48□□□□□ -2.17
Col28a1Q2UY11 Gm44734-201ENSMUST00000206025 237 ntTSL 5 BASIC1.48□□□□□ -2.17
Col28a1Q2UY11 Gm44807-201ENSMUST00000206115 154 ntBASIC1.48□□□□□ -2.17
Col28a1Q2UY11 A730009L09Rik-202ENSMUST00000210306 201 ntAPPRIS ALT2 TSL 5 BASIC1.48□□□□□ -2.17
Col28a1Q2UY11 Gm22454-201ENSMUST00000082583 107 ntBASIC1.48□□□□□ -2.17
Col28a1Q2UY11 Gm23790-201ENSMUST00000083013 107 ntBASIC1.48□□□□□ -2.17
Col28a1Q2UY11 Gm26123-201ENSMUST00000083363 135 ntBASIC1.48□□□□□ -2.17
Col28a1Q2UY11 Olfr188-ps1-201ENSMUST00000205766 4706 ntTSL 5 BASIC1.48□□□□□ -2.17
Col28a1Q2UY11 Vmn1r75-207ENSMUST00000228646 4466 ntAPPRIS ALT2 BASIC1.48□□□□□ -2.17
Col28a1Q2UY11 Scarna3b-201ENSMUST00000157533 139 ntBASIC1.47□□□□□ -2.17
Col28a1Q2UY11 Gm20391-201ENSMUST00000174722 106 ntBASIC1.47□□□□□ -2.17
Col28a1Q2UY11 Gm22129-201ENSMUST00000179034 107 ntBASIC1.47□□□□□ -2.17
Col28a1Q2UY11 Gm22827-201ENSMUST00000083766 107 ntBASIC1.47□□□□□ -2.17
Col28a1Q2UY11 Gm25611-201ENSMUST00000104017 133 ntBASIC1.46□□□□□ -2.18
Col28a1Q2UY11 Gm24895-201ENSMUST00000122742 74 ntBASIC1.46□□□□□ -2.18
Col28a1Q2UY11 Gm23601-201ENSMUST00000157259 131 ntBASIC1.46□□□□□ -2.18
Col28a1Q2UY11 Gm22770-201ENSMUST00000158368 67 ntBASIC1.46□□□□□ -2.18
Col28a1Q2UY11 Gm25976-201ENSMUST00000158695 130 ntBASIC1.46□□□□□ -2.18
Col28a1Q2UY11 Mir3086-201ENSMUST00000175072 87 ntBASIC1.46□□□□□ -2.18
Col28a1Q2UY11 Gm42891-201ENSMUST00000199340 281 ntTSL 5 BASIC1.46□□□□□ -2.18
Col28a1Q2UY11 Gm22884-201ENSMUST00000083127 140 ntBASIC1.46□□□□□ -2.18
Col28a1Q2UY11 Gm15115-201ENSMUST00000121145 264 ntBASIC1.45□□□□□ -2.18
Col28a1Q2UY11 Gm23172-201ENSMUST00000157160 124 ntBASIC1.45□□□□□ -2.18
Col28a1Q2UY11 Gm23221-201ENSMUST00000158118 93 ntBASIC1.45□□□□□ -2.18
Col28a1Q2UY11 Gm23351-201ENSMUST00000158427 125 ntBASIC1.45□□□□□ -2.18
Col28a1Q2UY11 Gm25241-201ENSMUST00000174909 84 ntBASIC1.45□□□□□ -2.18
Col28a1Q2UY11 Gm26217-201ENSMUST00000175212 84 ntBASIC1.45□□□□□ -2.18
Col28a1Q2UY11 Mir6419-201ENSMUST00000184784 113 ntBASIC1.45□□□□□ -2.18
Col28a1Q2UY11 Mir7665-201ENSMUST00000184907 63 ntBASIC1.45□□□□□ -2.18
Col28a1Q2UY11 Mir21c-201ENSMUST00000184910 78 ntBASIC1.45□□□□□ -2.18
Col28a1Q2UY11 Gm44462-201ENSMUST00000199696 129 ntBASIC1.45□□□□□ -2.18
Col28a1Q2UY11 Gm22354-201ENSMUST00000083919 70 ntBASIC1.45□□□□□ -2.18
Col28a1Q2UY11 Zfp40-203ENSMUST00000140313 2754 ntTSL 1 (best) BASIC1.44□□□□□ -2.18
Col28a1Q2UY11 Gm11248-201ENSMUST00000119568 201 ntBASIC1.44□□□□□ -2.18
Col28a1Q2UY11 Gm22425-201ENSMUST00000158532 138 ntBASIC1.44□□□□□ -2.18
Col28a1Q2UY11 Gm43911-201ENSMUST00000203097 76 ntBASIC1.44□□□□□ -2.18
Col28a1Q2UY11 AC166341.8-201ENSMUST00000221267 108 ntBASIC1.44□□□□□ -2.18
Col28a1Q2UY11 Mir320-201ENSMUST00000083594 82 ntBASIC1.44□□□□□ -2.18
Col28a1Q2UY11 Gm24523-201ENSMUST00000083965 132 ntBASIC1.44□□□□□ -2.18
Col28a1Q2UY11 Zfp981-203ENSMUST00000179175 2953 ntAPPRIS P1 TSL 2 BASIC1.44□□□□□ -2.18
Col28a1Q2UY11 Vmn1r75-205ENSMUST00000228268 4376 ntAPPRIS ALT2 BASIC1.43□□□□□ -2.18
Retrieved 100 of 76,532 protein–RNA pairs in 141.2 ms