Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Gm15611-201ENSMUST00000146928 406 ntTSL 1 (best) BASIC2.2□□□□□ -2.06
Ddb1Q3U1J4 Gm25060-201ENSMUST00000157374 130 ntBASIC2.2□□□□□ -2.06
Ddb1Q3U1J4 Gm22850-201ENSMUST00000157714 82 ntBASIC2.2□□□□□ -2.06
Ddb1Q3U1J4 Gm22966-201ENSMUST00000157957 129 ntBASIC2.2□□□□□ -2.06
Ddb1Q3U1J4 Gm22612-201ENSMUST00000158293 101 ntBASIC2.2□□□□□ -2.06
Ddb1Q3U1J4 Gm23260-201ENSMUST00000158317 172 ntBASIC2.2□□□□□ -2.06
Ddb1Q3U1J4 C920009B18Rik-204ENSMUST00000181733 123 ntBASIC2.2□□□□□ -2.06
Ddb1Q3U1J4 Gm38364-201ENSMUST00000191814 179 ntBASIC2.2□□□□□ -2.06
Ddb1Q3U1J4 Gm44325-201ENSMUST00000196757 77 ntBASIC2.2□□□□□ -2.06
Ddb1Q3U1J4 Gm8219-201ENSMUST00000218309 242 ntBASIC2.2□□□□□ -2.06
Ddb1Q3U1J4 AC120540.2-201ENSMUST00000221716 387 ntBASIC2.2□□□□□ -2.06
Ddb1Q3U1J4 Snora3-201ENSMUST00000083082 132 ntBASIC2.2□□□□□ -2.06
Ddb1Q3U1J4 Gm10351-201ENSMUST00000087694 125 ntBASIC2.2□□□□□ -2.06
Ddb1Q3U1J4 Gm22105-201ENSMUST00000116734 116 ntBASIC2.19□□□□□ -2.06
Ddb1Q3U1J4 Gm15115-201ENSMUST00000121145 264 ntBASIC2.19□□□□□ -2.06
Ddb1Q3U1J4 Gm25828-201ENSMUST00000157087 95 ntBASIC2.19□□□□□ -2.06
Ddb1Q3U1J4 Mir34a-201ENSMUST00000083559 102 ntBASIC2.19□□□□□ -2.06
Ddb1Q3U1J4 Gm22828-201ENSMUST00000083768 107 ntBASIC2.19□□□□□ -2.06
Ddb1Q3U1J4 Gm6377-201ENSMUST00000060013 2793 ntAPPRIS P1 TSL 1 (best) BASIC2.19□□□□□ -2.06
Ddb1Q3U1J4 Gm25879-201ENSMUST00000104330 107 ntBASIC2.18□□□□□ -2.06
Ddb1Q3U1J4 Gm22494-201ENSMUST00000104495 128 ntBASIC2.18□□□□□ -2.06
Ddb1Q3U1J4 Gm25980-201ENSMUST00000157176 218 ntBASIC2.18□□□□□ -2.06
Ddb1Q3U1J4 Gm26360-201ENSMUST00000158872 103 ntBASIC2.18□□□□□ -2.06
Ddb1Q3U1J4 Mir320-201ENSMUST00000083594 82 ntBASIC2.18□□□□□ -2.06
Ddb1Q3U1J4 Fau-ps1-201ENSMUST00000119675 252 ntBASIC2.17□□□□□ -2.06
Ddb1Q3U1J4 Gm23898-201ENSMUST00000158111 103 ntBASIC2.17□□□□□ -2.06
Ddb1Q3U1J4 Gm27722-201ENSMUST00000183908 76 ntBASIC2.17□□□□□ -2.06
Ddb1Q3U1J4 AC124739.2-201ENSMUST00000222201 109 ntBASIC2.17□□□□□ -2.06
Ddb1Q3U1J4 Gm26011-201ENSMUST00000104410 104 ntBASIC2.16□□□□□ -2.06
Ddb1Q3U1J4 Gm12432-201ENSMUST00000119540 186 ntBASIC2.16□□□□□ -2.06
Ddb1Q3U1J4 Gm15692-201ENSMUST00000152173 352 ntBASIC2.16□□□□□ -2.06
Ddb1Q3U1J4 Mir1931-201ENSMUST00000158589 119 ntBASIC2.16□□□□□ -2.06
Ddb1Q3U1J4 Mir6240-201ENSMUST00000184281 117 ntBASIC2.16□□□□□ -2.06
Ddb1Q3U1J4 Gm37545-201ENSMUST00000186512 148 ntBASIC2.16□□□□□ -2.06
Ddb1Q3U1J4 AC129085.1-201ENSMUST00000225263 165 ntBASIC2.16□□□□□ -2.06
Ddb1Q3U1J4 Gm25815-201ENSMUST00000082755 107 ntBASIC2.16□□□□□ -2.06
Ddb1Q3U1J4 Gm24151-201ENSMUST00000082758 141 ntBASIC2.16□□□□□ -2.06
Ddb1Q3U1J4 Gm23445-201ENSMUST00000082800 107 ntBASIC2.16□□□□□ -2.06
Ddb1Q3U1J4 Knl1-203ENSMUST00000099542 6525 ntAPPRIS P1 TSL 5 BASIC2.16□□□□□ -2.06
Ddb1Q3U1J4 Traj30-201ENSMUST00000103711 59 ntAPPRIS P1 BASIC2.15□□□□□ -2.07
Ddb1Q3U1J4 Gm16186-201ENSMUST00000120132 216 ntBASIC2.15□□□□□ -2.07
Ddb1Q3U1J4 Gm24141-201ENSMUST00000122776 115 ntBASIC2.15□□□□□ -2.07
Ddb1Q3U1J4 Gm23337-201ENSMUST00000158959 118 ntBASIC2.15□□□□□ -2.07
Ddb1Q3U1J4 Snord87-201ENSMUST00000175437 87 ntBASIC2.15□□□□□ -2.07
Ddb1Q3U1J4 Gm27511-201ENSMUST00000183502 127 ntBASIC2.15□□□□□ -2.07
Ddb1Q3U1J4 Mir7683-201ENSMUST00000183842 61 ntBASIC2.15□□□□□ -2.07
Ddb1Q3U1J4 Gm29613-201ENSMUST00000185846 313 ntBASIC2.15□□□□□ -2.07
Ddb1Q3U1J4 Gm29544-201ENSMUST00000188860 313 ntBASIC2.15□□□□□ -2.07
Ddb1Q3U1J4 Gm28808-201ENSMUST00000190978 313 ntBASIC2.15□□□□□ -2.07
Ddb1Q3U1J4 Gm45492-201ENSMUST00000211611 288 ntBASIC2.15□□□□□ -2.07
Ddb1Q3U1J4 Gm22306-201ENSMUST00000082692 107 ntBASIC2.15□□□□□ -2.07
Ddb1Q3U1J4 Gm23303-201ENSMUST00000082714 152 ntBASIC2.15□□□□□ -2.07
Ddb1Q3U1J4 Gm26456-201ENSMUST00000082831 111 ntBASIC2.15□□□□□ -2.07
Ddb1Q3U1J4 Scarna3b-201ENSMUST00000157533 139 ntBASIC2.14□□□□□ -2.07
Ddb1Q3U1J4 Gm23080-201ENSMUST00000157846 103 ntBASIC2.14□□□□□ -2.07
Ddb1Q3U1J4 Gm28669-201ENSMUST00000188400 100 ntBASIC2.14□□□□□ -2.07
Ddb1Q3U1J4 AL772271.1-201ENSMUST00000196848 65 ntBASIC2.14□□□□□ -2.07
Ddb1Q3U1J4 Mir6962-201ENSMUST00000199512 63 ntBASIC2.14□□□□□ -2.07
Ddb1Q3U1J4 Gm24461-201ENSMUST00000082735 103 ntBASIC2.14□□□□□ -2.07
Ddb1Q3U1J4 Gm24705-201ENSMUST00000082808 107 ntBASIC2.14□□□□□ -2.07
Ddb1Q3U1J4 Gm25697-201ENSMUST00000082902 98 ntBASIC2.14□□□□□ -2.07
Ddb1Q3U1J4 Olfr1291-ps1-201ENSMUST00000121345 5403 ntAPPRIS P1 TSL 5 BASIC2.13□□□□□ -2.07
Ddb1Q3U1J4 Olfr1253-203ENSMUST00000215185 4984 ntAPPRIS P1 TSL 5 BASIC2.13□□□□□ -2.07
Ddb1Q3U1J4 Snord100-201ENSMUST00000116836 74 ntBASIC2.13□□□□□ -2.07
Ddb1Q3U1J4 Gm11644-201ENSMUST00000119735 150 ntBASIC2.13□□□□□ -2.07
Ddb1Q3U1J4 Gm13246-201ENSMUST00000120994 315 ntBASIC2.13□□□□□ -2.07
Ddb1Q3U1J4 Gm22790-201ENSMUST00000157229 129 ntBASIC2.13□□□□□ -2.07
Ddb1Q3U1J4 Gm26181-201ENSMUST00000157687 106 ntBASIC2.13□□□□□ -2.07
Ddb1Q3U1J4 Gm22163-201ENSMUST00000158408 135 ntBASIC2.13□□□□□ -2.07
Ddb1Q3U1J4 Gm23813-201ENSMUST00000175153 77 ntBASIC2.13□□□□□ -2.07
Ddb1Q3U1J4 Gm27668-201ENSMUST00000184188 120 ntBASIC2.13□□□□□ -2.07
Ddb1Q3U1J4 Gm27544-201ENSMUST00000185069 155 ntBASIC2.13□□□□□ -2.07
Ddb1Q3U1J4 Gm28409-201ENSMUST00000187064 103 ntBASIC2.13□□□□□ -2.07
Ddb1Q3U1J4 AC153512.4-201ENSMUST00000217783 426 ntTSL 3 BASIC2.13□□□□□ -2.07
Ddb1Q3U1J4 Arhgap5-201ENSMUST00000110725 5197 ntAPPRIS P1 TSL 1 (best) BASIC2.12□□□□□ -2.07
Ddb1Q3U1J4 Gm25170-201ENSMUST00000104191 129 ntBASIC2.12□□□□□ -2.07
Ddb1Q3U1J4 Gm15069-201ENSMUST00000117792 192 ntBASIC2.12□□□□□ -2.07
Ddb1Q3U1J4 Gm15067-201ENSMUST00000119534 156 ntBASIC2.12□□□□□ -2.07
Ddb1Q3U1J4 Gm15068-201ENSMUST00000119796 192 ntBASIC2.12□□□□□ -2.07
Ddb1Q3U1J4 U6.1-201ENSMUST00000157443 101 ntBASIC2.12□□□□□ -2.07
Ddb1Q3U1J4 Mir6950-201ENSMUST00000184438 73 ntBASIC2.12□□□□□ -2.07
Ddb1Q3U1J4 Mir6419-201ENSMUST00000184784 113 ntBASIC2.12□□□□□ -2.07
Ddb1Q3U1J4 Gm28383-201ENSMUST00000187563 139 ntBASIC2.12□□□□□ -2.07
Ddb1Q3U1J4 Gm37116-201ENSMUST00000195161 147 ntBASIC2.12□□□□□ -2.07
Ddb1Q3U1J4 Gm22738-201ENSMUST00000083440 147 ntBASIC2.12□□□□□ -2.07
Ddb1Q3U1J4 Gm44177-201ENSMUST00000204338 2667 ntBASIC2.11□□□□□ -2.07
Ddb1Q3U1J4 Traj52-201ENSMUST00000103691 66 ntAPPRIS P1 BASIC2.11□□□□□ -2.07
Ddb1Q3U1J4 Gm26074-201ENSMUST00000104063 129 ntBASIC2.11□□□□□ -2.07
Ddb1Q3U1J4 Gm24171-201ENSMUST00000104126 131 ntBASIC2.11□□□□□ -2.07
Ddb1Q3U1J4 Gm24717-201ENSMUST00000157522 124 ntBASIC2.11□□□□□ -2.07
Ddb1Q3U1J4 Gm25976-201ENSMUST00000158695 130 ntBASIC2.11□□□□□ -2.07
Ddb1Q3U1J4 Gm27672-201ENSMUST00000183751 204 ntBASIC2.11□□□□□ -2.07
Ddb1Q3U1J4 Gm18665-201ENSMUST00000189783 270 ntBASIC2.11□□□□□ -2.07
Ddb1Q3U1J4 AC139186.1-201ENSMUST00000197610 94 ntBASIC2.11□□□□□ -2.07
Ddb1Q3U1J4 AC126691.1-201ENSMUST00000226534 202 ntBASIC2.11□□□□□ -2.07
Ddb1Q3U1J4 mt-Ta-201ENSMUST00000082398 69 ntBASIC2.11□□□□□ -2.07
Ddb1Q3U1J4 Gm22681-201ENSMUST00000083853 106 ntBASIC2.11□□□□□ -2.07
Ddb1Q3U1J4 Olfr730-202ENSMUST00000205837 4903 ntAPPRIS ALT1 BASIC2.11□□□□□ -2.07
Ddb1Q3U1J4 Snord90-201ENSMUST00000104568 111 ntBASIC2.1□□□□□ -2.07
Ddb1Q3U1J4 Gm25882-201ENSMUST00000157784 85 ntBASIC2.1□□□□□ -2.07
Retrieved 100 of 76,532 protein–RNA pairs in 265.6 ms