Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Gm19721-201ENSMUST00000195284 1764 ntBASIC18.67■□□□□ 0.58
Prpf40aQ9R1C7 Slc27a4-201ENSMUST00000080065 4054 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Prpf40aQ9R1C7 Hspa8-201ENSMUST00000015800 2394 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Prpf40aQ9R1C7 Sult2b1-204ENSMUST00000209739 1858 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
Prpf40aQ9R1C7 Map3k10-202ENSMUST00000108341 3403 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
Prpf40aQ9R1C7 Scarf2-201ENSMUST00000012161 3302 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Prpf40aQ9R1C7 Krt6a-201ENSMUST00000023788 2256 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Prpf40aQ9R1C7 Slc43a1-202ENSMUST00000111624 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Prpf40aQ9R1C7 Crct1-202ENSMUST00000107301 460 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
Prpf40aQ9R1C7 Gm12085-201ENSMUST00000119263 940 ntBASIC18.66■□□□□ 0.58
Prpf40aQ9R1C7 Gm16105-201ENSMUST00000156926 697 ntTSL 3 BASIC18.66■□□□□ 0.58
Prpf40aQ9R1C7 Fam126a-201ENSMUST00000030849 5659 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Prpf40aQ9R1C7 Ern1-204ENSMUST00000106801 1957 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Prpf40aQ9R1C7 Cdipt-201ENSMUST00000032920 1974 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Prpf40aQ9R1C7 A130014A01Rik-201ENSMUST00000183021 2323 ntBASIC18.66■□□□□ 0.58
Prpf40aQ9R1C7 Snrnp48-201ENSMUST00000091641 1785 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Prpf40aQ9R1C7 Gm10649-203ENSMUST00000148066 1812 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Prpf40aQ9R1C7 Gpr180-201ENSMUST00000022728 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Prpf40aQ9R1C7 Wapl-201ENSMUST00000048263 6351 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
Prpf40aQ9R1C7 Kmt5b-202ENSMUST00000052699 3290 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
Prpf40aQ9R1C7 Aspscr1-204ENSMUST00000106159 1615 ntTSL 5 BASIC18.65■□□□□ 0.58
Prpf40aQ9R1C7 Ubtf-207ENSMUST00000128016 1062 ntTSL 2 BASIC18.65■□□□□ 0.58
Prpf40aQ9R1C7 Gm37025-201ENSMUST00000195159 829 ntBASIC18.65■□□□□ 0.58
Prpf40aQ9R1C7 Rara-204ENSMUST00000107475 2469 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Prpf40aQ9R1C7 Tmem233-201ENSMUST00000111997 2477 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
Prpf40aQ9R1C7 A930001A20Rik-201ENSMUST00000182586 1366 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Prpf40aQ9R1C7 Aldh2-202ENSMUST00000129753 1799 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Prpf40aQ9R1C7 Fxyd6-201ENSMUST00000085939 1788 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Prpf40aQ9R1C7 Tacc1-201ENSMUST00000084030 7788 ntAPPRIS P4 TSL 1 (best) BASIC18.65■□□□□ 0.58
Prpf40aQ9R1C7 A430078I02Rik-202ENSMUST00000154066 2233 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Prpf40aQ9R1C7 Aig1-201ENSMUST00000019942 1439 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Prpf40aQ9R1C7 Clcn2-202ENSMUST00000120099 2812 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.58
Prpf40aQ9R1C7 Col17a1-202ENSMUST00000086923 5477 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
Prpf40aQ9R1C7 Ptp4a2-201ENSMUST00000030578 3646 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
Prpf40aQ9R1C7 Galnt13-204ENSMUST00000112636 7530 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Prpf40aQ9R1C7 Tia1-203ENSMUST00000095754 1789 ntAPPRIS ALT1 TSL 5 BASIC18.64■□□□□ 0.57
Prpf40aQ9R1C7 Nkx2-2-203ENSMUST00000109970 1053 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Prpf40aQ9R1C7 Gm3375-201ENSMUST00000203929 796 ntBASIC18.64■□□□□ 0.57
Prpf40aQ9R1C7 Gm26548-201ENSMUST00000181165 2029 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Prpf40aQ9R1C7 Tm7sf3-201ENSMUST00000037709 3241 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Prpf40aQ9R1C7 Slit1-201ENSMUST00000025993 5045 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Prpf40aQ9R1C7 Pigu-201ENSMUST00000077626 1636 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Prpf40aQ9R1C7 Plppr5-202ENSMUST00000106473 4294 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Prpf40aQ9R1C7 Dach1-201ENSMUST00000069334 5063 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Prpf40aQ9R1C7 Prps1l3-201ENSMUST00000139049 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Prpf40aQ9R1C7 Zscan25-201ENSMUST00000094116 1796 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Prpf40aQ9R1C7 Stam-202ENSMUST00000102960 5000 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Prpf40aQ9R1C7 Slc7a5-201ENSMUST00000045557 3517 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Prpf40aQ9R1C7 Acss2-202ENSMUST00000065973 2876 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Prpf40aQ9R1C7 Zranb2-203ENSMUST00000106058 2924 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Prpf40aQ9R1C7 Snx27-201ENSMUST00000029783 6261 ntAPPRIS ALT1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Prpf40aQ9R1C7 Gm1673-203ENSMUST00000114383 511 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Prpf40aQ9R1C7 Atf7ip2-204ENSMUST00000119023 1048 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Prpf40aQ9R1C7 Smim14-202ENSMUST00000121661 1056 ntAPPRIS P1 TSL 3 BASIC18.63■□□□□ 0.57
Prpf40aQ9R1C7 Nsl1-203ENSMUST00000139340 837 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Prpf40aQ9R1C7 Cldn14-205ENSMUST00000177648 1266 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
Prpf40aQ9R1C7 Fxyd1-208ENSMUST00000205807 539 ntTSL 3 BASIC18.63■□□□□ 0.57
Prpf40aQ9R1C7 Rps12-206ENSMUST00000218221 460 ntTSL 5 BASIC18.63■□□□□ 0.57
Prpf40aQ9R1C7 Espn-202ENSMUST00000049305 1142 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Prpf40aQ9R1C7 Zufsp-202ENSMUST00000218055 2180 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Prpf40aQ9R1C7 Cnksr2-201ENSMUST00000026750 5738 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Prpf40aQ9R1C7 Bean1-201ENSMUST00000093245 3199 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Prpf40aQ9R1C7 BC029722-201ENSMUST00000124586 1615 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Prpf40aQ9R1C7 Gm6093-201ENSMUST00000221792 1623 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Prpf40aQ9R1C7 Zbtb9-201ENSMUST00000120016 2798 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Prpf40aQ9R1C7 Necab3-202ENSMUST00000109716 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Prpf40aQ9R1C7 Gprc5c-203ENSMUST00000122967 1709 ntTSL 5 BASIC18.63■□□□□ 0.57
Prpf40aQ9R1C7 Thsd7a-202ENSMUST00000119581 5678 ntAPPRIS P2 TSL 5 BASIC18.63■□□□□ 0.57
Prpf40aQ9R1C7 Atp2b2-201ENSMUST00000089003 7067 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
Prpf40aQ9R1C7 Ets1-206ENSMUST00000184887 2107 ntTSL 5 BASIC18.62■□□□□ 0.57
Prpf40aQ9R1C7 Dscr3-201ENSMUST00000023615 2547 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Prpf40aQ9R1C7 Yars2-204ENSMUST00000159962 2805 ntTSL 2 BASIC18.62■□□□□ 0.57
Prpf40aQ9R1C7 Vopp1-201ENSMUST00000114297 2919 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Prpf40aQ9R1C7 Tsfm-202ENSMUST00000120547 1271 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Prpf40aQ9R1C7 Gm17098-201ENSMUST00000166507 628 ntTSL 5 BASIC18.62■□□□□ 0.57
Prpf40aQ9R1C7 D330020A13Rik-201ENSMUST00000181956 1069 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
Prpf40aQ9R1C7 Cacna2d1-207ENSMUST00000196750 1272 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Prpf40aQ9R1C7 Gm34933-201ENSMUST00000203245 1067 ntTSL 5 BASIC18.62■□□□□ 0.57
Prpf40aQ9R1C7 Gm10252-201ENSMUST00000209541 832 ntBASIC18.62■□□□□ 0.57
Prpf40aQ9R1C7 Sae1-203ENSMUST00000210999 1254 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Prpf40aQ9R1C7 Otx2os1-204ENSMUST00000227221 751 ntBASIC18.62■□□□□ 0.57
Prpf40aQ9R1C7 Olfr1411-201ENSMUST00000073748 972 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
Prpf40aQ9R1C7 9430097D07Rik-201ENSMUST00000100190 1501 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
Prpf40aQ9R1C7 Col11a2-202ENSMUST00000114252 5620 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
Prpf40aQ9R1C7 Syngap1-204ENSMUST00000194598 6011 ntAPPRIS P2 TSL 5 BASIC18.62■□□□□ 0.57
Prpf40aQ9R1C7 Parg-208ENSMUST00000170840 2894 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
Prpf40aQ9R1C7 Slc22a3-201ENSMUST00000024595 3501 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Prpf40aQ9R1C7 Ddx41-204ENSMUST00000224765 2199 ntBASIC18.61■□□□□ 0.57
Prpf40aQ9R1C7 Negr1-203ENSMUST00000106065 1953 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Prpf40aQ9R1C7 Rrbp1-201ENSMUST00000016072 5177 ntAPPRIS P4 TSL 5 BASIC18.61■□□□□ 0.57
Prpf40aQ9R1C7 Med18-201ENSMUST00000102567 1675 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Prpf40aQ9R1C7 4930426L09Rik-201ENSMUST00000028069 1459 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
Prpf40aQ9R1C7 Dlk2-202ENSMUST00000166280 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Prpf40aQ9R1C7 Gm37055-201ENSMUST00000191866 133 ntBASIC18.61■□□□□ 0.57
Prpf40aQ9R1C7 Casp3-203ENSMUST00000210534 583 ntTSL 5 BASIC18.61■□□□□ 0.57
Prpf40aQ9R1C7 Tollip-202ENSMUST00000055819 1100 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Prpf40aQ9R1C7 Nme2-202ENSMUST00000072566 734 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Prpf40aQ9R1C7 Kif5b-201ENSMUST00000025083 6032 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Prpf40aQ9R1C7 Piezo2-201ENSMUST00000046860 2849 ntTSL 5 BASIC18.61■□□□□ 0.57
Prpf40aQ9R1C7 Fmnl3-202ENSMUST00000088233 4423 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
Retrieved 100 of 76,532 protein–RNA pairs in 17.4 ms