Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Speg-202ENSMUST00000113587 1254 ntTSL 5 BASIC20.08■□□□□ 0.8
Scn11aQ9R053 Alkal1-201ENSMUST00000133144 971 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Scn11aQ9R053 A230065H16Rik-201ENSMUST00000150384 670 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Scn11aQ9R053 Apopt1-204ENSMUST00000163220 671 ntAPPRIS ALT2 TSL 2 BASIC20.08■□□□□ 0.8
Scn11aQ9R053 Timm29-201ENSMUST00000062125 3170 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Scn11aQ9R053 Rassf1-204ENSMUST00000122225 1783 ntTSL 5 BASIC20.08■□□□□ 0.8
Scn11aQ9R053 Rassf1-202ENSMUST00000093786 1787 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Scn11aQ9R053 Nrros-203ENSMUST00000115165 2389 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.8
Scn11aQ9R053 Ppil3-204ENSMUST00000117069 1363 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Scn11aQ9R053 Kcnk10-203ENSMUST00000221305 1357 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
Scn11aQ9R053 Ttyh1-217ENSMUST00000206869 1491 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Scn11aQ9R053 Rhbdd3-202ENSMUST00000101610 2333 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Scn11aQ9R053 Ccdc102a-201ENSMUST00000077955 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Scn11aQ9R053 Apbb1-205ENSMUST00000187057 1630 ntTSL 5 BASIC20.07■□□□□ 0.8
Scn11aQ9R053 Oraov1-203ENSMUST00000105895 1016 ntAPPRIS ALT2 TSL 2 BASIC20.07■□□□□ 0.8
Scn11aQ9R053 Tnnt1-203ENSMUST00000108587 1059 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
Scn11aQ9R053 Otub1-202ENSMUST00000123594 1728 ntTSL 5 BASIC20.07■□□□□ 0.8
Scn11aQ9R053 Eml4-202ENSMUST00000096766 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
Scn11aQ9R053 Derl3-202ENSMUST00000217811 1316 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
Scn11aQ9R053 Etnk1-204ENSMUST00000205256 2647 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Scn11aQ9R053 Clasp2-204ENSMUST00000213663 2727 ntTSL 5 BASIC20.06■□□□□ 0.8
Scn11aQ9R053 Sirpa-213ENSMUST00000163034 677 ntTSL 3 BASIC20.06■□□□□ 0.8
Scn11aQ9R053 Slc25a43-201ENSMUST00000047655 1111 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Scn11aQ9R053 Smu1-201ENSMUST00000030117 2418 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Scn11aQ9R053 Gm26568-201ENSMUST00000180496 1594 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Scn11aQ9R053 Meis2-202ENSMUST00000074285 2844 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Scn11aQ9R053 Rnf26-201ENSMUST00000056328 2724 ntAPPRIS P2 BASIC20.06■□□□□ 0.8
Scn11aQ9R053 Ehmt2-203ENSMUST00000097342 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Scn11aQ9R053 Rmnd5a-201ENSMUST00000002292 6165 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Scn11aQ9R053 Zswim6-201ENSMUST00000105097 5456 ntTSL 5 BASIC20.06■□□□□ 0.8
Scn11aQ9R053 Igsf9b-201ENSMUST00000115247 2857 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Scn11aQ9R053 Rbbp7-203ENSMUST00000112327 1862 ntTSL 5 BASIC20.06■□□□□ 0.8
Scn11aQ9R053 Rsph6a-202ENSMUST00000076887 1580 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Scn11aQ9R053 Hist1h1a-201ENSMUST00000055770 741 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
Scn11aQ9R053 Mamstr-201ENSMUST00000148532 1606 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Scn11aQ9R053 Tmem176a-201ENSMUST00000101426 1540 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Scn11aQ9R053 Crhr2-203ENSMUST00000114374 1440 ntAPPRIS ALT1 TSL 5 BASIC20.05■□□□□ 0.8
Scn11aQ9R053 Ogfod3-201ENSMUST00000026169 1308 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Scn11aQ9R053 Slc6a8-206ENSMUST00000164449 2151 ntTSL 5 BASIC20.05■□□□□ 0.8
Scn11aQ9R053 Syncrip-205ENSMUST00000173801 2944 ntAPPRIS ALT1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Scn11aQ9R053 Cyth2-201ENSMUST00000056820 2527 ntAPPRIS ALT1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Scn11aQ9R053 Stxbp5l-202ENSMUST00000114775 1691 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Scn11aQ9R053 Htr6-202ENSMUST00000105802 2341 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
Scn11aQ9R053 Ankra2-203ENSMUST00000123924 2328 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Scn11aQ9R053 Gas1-201ENSMUST00000065086 2961 ntAPPRIS ALT2 BASIC20.05■□□□□ 0.8
Scn11aQ9R053 Prdm5-201ENSMUST00000031973 1488 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Scn11aQ9R053 Tecr-201ENSMUST00000019382 1158 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Scn11aQ9R053 Lsmem1-201ENSMUST00000095760 1213 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Scn11aQ9R053 Crim1-201ENSMUST00000112498 5995 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Scn11aQ9R053 Shd-201ENSMUST00000044216 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
Scn11aQ9R053 Tigd3-201ENSMUST00000055911 2114 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Scn11aQ9R053 Cobll1-204ENSMUST00000112430 4917 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
Scn11aQ9R053 Rab1a-201ENSMUST00000020358 2827 ntAPPRIS ALT1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Scn11aQ9R053 Kcng4-202ENSMUST00000164382 1875 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
Scn11aQ9R053 AC153794.1-201ENSMUST00000169148 126 ntBASIC20.04■□□□□ 0.8
Scn11aQ9R053 Syne4-208ENSMUST00000176304 1006 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
Scn11aQ9R053 CT009713.7-201ENSMUST00000224689 571 ntBASIC20.04■□□□□ 0.8
Scn11aQ9R053 Dlg1-205ENSMUST00000115201 3248 ntTSL 5 BASIC20.04■□□□□ 0.8
Scn11aQ9R053 Tmem185a-201ENSMUST00000101506 2429 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Scn11aQ9R053 Casp8-204ENSMUST00000191201 1849 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
Scn11aQ9R053 Aspscr1-205ENSMUST00000106160 1550 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Scn11aQ9R053 Prss8-201ENSMUST00000032988 1852 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Scn11aQ9R053 Lcmt2-201ENSMUST00000099486 2047 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Scn11aQ9R053 Ndor1-202ENSMUST00000114349 2336 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Scn11aQ9R053 Ppp3cb-206ENSMUST00000161989 2322 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Scn11aQ9R053 Gm43347-201ENSMUST00000200226 580 ntBASIC20.03■□□□□ 0.8
Scn11aQ9R053 Gm44430-201ENSMUST00000203376 995 ntBASIC20.03■□□□□ 0.8
Scn11aQ9R053 Gm40457-201ENSMUST00000205319 1174 ntTSL 5 BASIC20.03■□□□□ 0.8
Scn11aQ9R053 AC107711.5-202ENSMUST00000226429 702 ntBASIC20.03■□□□□ 0.8
Scn11aQ9R053 A730056A06Rik-201ENSMUST00000181299 2689 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Scn11aQ9R053 Clint1-202ENSMUST00000109261 3365 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
Scn11aQ9R053 Grk2-202ENSMUST00000088737 3376 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Scn11aQ9R053 Gm15442-201ENSMUST00000117905 1527 ntBASIC20.03■□□□□ 0.8
Scn11aQ9R053 Mettl21a-202ENSMUST00000114079 2030 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Scn11aQ9R053 Tulp1-202ENSMUST00000114794 1738 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Scn11aQ9R053 Haus8-201ENSMUST00000035960 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
Scn11aQ9R053 Coil-201ENSMUST00000036649 2607 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Scn11aQ9R053 Zfyve19-201ENSMUST00000090174 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Scn11aQ9R053 Cnnm4-201ENSMUST00000153128 4547 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Scn11aQ9R053 Tpm1-215ENSMUST00000113705 1759 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Scn11aQ9R053 Hmbs-201ENSMUST00000077353 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Scn11aQ9R053 B3gnt9-202ENSMUST00000136822 2516 ntAPPRIS P1 BASIC20.02■□□□□ 0.8
Scn11aQ9R053 Rusc1-203ENSMUST00000166687 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
Scn11aQ9R053 Herpud2-201ENSMUST00000008573 2781 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Scn11aQ9R053 Klc1-202ENSMUST00000118471 2272 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Scn11aQ9R053 Layn-201ENSMUST00000098782 1786 ntAPPRIS P2 TSL 5 BASIC20.02■□□□□ 0.8
Scn11aQ9R053 Atp6v1g2-203ENSMUST00000130992 524 ntTSL 2 BASIC20.02■□□□□ 0.8
Scn11aQ9R053 Tmem255b-201ENSMUST00000167071 1138 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Scn11aQ9R053 Slc39a1-201ENSMUST00000015467 2364 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Scn11aQ9R053 Gm12895-201ENSMUST00000122214 226 ntBASIC20.01■□□□□ 0.79
Scn11aQ9R053 Gm15295-201ENSMUST00000139874 488 ntTSL 5 BASIC20.01■□□□□ 0.79
Scn11aQ9R053 Vegfc-203ENSMUST00000210831 555 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Scn11aQ9R053 Nmu-201ENSMUST00000031146 828 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Scn11aQ9R053 Mycn-202ENSMUST00000130990 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Scn11aQ9R053 Ndufv2-203ENSMUST00000143987 1540 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Scn11aQ9R053 Tedc2-201ENSMUST00000024930 2166 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Scn11aQ9R053 Jam2-201ENSMUST00000098407 1998 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Scn11aQ9R053 Jdp2-202ENSMUST00000171754 1559 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Scn11aQ9R053 Dixdc1-207ENSMUST00000121634 2420 ntTSL 5 BASIC20.01■□□□□ 0.79
Scn11aQ9R053 Rasgef1b-205ENSMUST00000161148 2430 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Retrieved 100 of 76,532 protein–RNA pairs in 28.5 ms