Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 1700066B19Rik-201ENSMUST00000097617 2504 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Lima1Q9ERG0 Polr2c-201ENSMUST00000109521 1580 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Lima1Q9ERG0 Fam120c-201ENSMUST00000073364 5463 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Lima1Q9ERG0 Klhl40-201ENSMUST00000098272 2370 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Lima1Q9ERG0 Dtx2-201ENSMUST00000005072 2562 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
Lima1Q9ERG0 Selenos-201ENSMUST00000101801 1191 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
Lima1Q9ERG0 Gm6270-201ENSMUST00000132731 559 ntTSL 5 BASIC16.77■□□□□ 0.28
Lima1Q9ERG0 2610035F20Rik-202ENSMUST00000177306 1149 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
Lima1Q9ERG0 AC153845.2-202ENSMUST00000213372 807 ntTSL 3 BASIC16.77■□□□□ 0.28
Lima1Q9ERG0 Gm46218-201ENSMUST00000215448 801 ntTSL 5 BASIC16.77■□□□□ 0.28
Lima1Q9ERG0 Gnb5-201ENSMUST00000076889 1188 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
Lima1Q9ERG0 AC108858.1-201ENSMUST00000228461 1498 ntBASIC16.77■□□□□ 0.28
Lima1Q9ERG0 Mier2-203ENSMUST00000165028 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.27
Lima1Q9ERG0 Ripk1-201ENSMUST00000021844 3266 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Lima1Q9ERG0 Ngb-201ENSMUST00000021420 1616 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.27
Lima1Q9ERG0 Zscan25-201ENSMUST00000094116 1796 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Lima1Q9ERG0 Fam213a-202ENSMUST00000118466 1567 ntAPPRIS ALT1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Lima1Q9ERG0 G3bp2-204ENSMUST00000169094 2716 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
Lima1Q9ERG0 Dvl3-204ENSMUST00000171774 2319 ntTSL 5 BASIC16.76■□□□□ 0.27
Lima1Q9ERG0 Dhcr24-201ENSMUST00000047973 4028 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Lima1Q9ERG0 Espn-206ENSMUST00000103196 1323 ntTSL 5 BASIC16.76■□□□□ 0.27
Lima1Q9ERG0 Zmynd19-201ENSMUST00000028350 3903 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Lima1Q9ERG0 Sept4-205ENSMUST00000107962 1678 ntAPPRIS ALT1 TSL 5 BASIC16.76■□□□□ 0.27
Lima1Q9ERG0 Phtf1-202ENSMUST00000063717 3327 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Lima1Q9ERG0 Tfam-203ENSMUST00000121685 899 ntAPPRIS ALT2 TSL 2 BASIC16.76■□□□□ 0.27
Lima1Q9ERG0 3110082J24Rik-201ENSMUST00000127749 327 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
Lima1Q9ERG0 Fam98c-203ENSMUST00000134176 1189 ntTSL 2 BASIC16.76■□□□□ 0.27
Lima1Q9ERG0 Mtag2-201ENSMUST00000058665 714 ntBASIC16.76■□□□□ 0.27
Lima1Q9ERG0 1700067K01Rik-201ENSMUST00000060357 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
Lima1Q9ERG0 Pigz-201ENSMUST00000052174 2184 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Lima1Q9ERG0 Wscd1-203ENSMUST00000108511 2866 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
Lima1Q9ERG0 Saysd1-201ENSMUST00000059666 2315 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Lima1Q9ERG0 Prdm12-201ENSMUST00000113470 2471 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
Lima1Q9ERG0 Paqr3-201ENSMUST00000069453 1375 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Lima1Q9ERG0 9530018F02Rik-201ENSMUST00000219513 2599 ntBASIC16.76■□□□□ 0.27
Lima1Q9ERG0 Enah-202ENSMUST00000111024 3572 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
Lima1Q9ERG0 Gm36858-201ENSMUST00000194501 2391 ntBASIC16.75■□□□□ 0.27
Lima1Q9ERG0 BC030336-201ENSMUST00000060175 4831 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Lima1Q9ERG0 Zfp219-212ENSMUST00000228580 2812 ntAPPRIS ALT2 BASIC16.75■□□□□ 0.27
Lima1Q9ERG0 Kcnq5-203ENSMUST00000115300 6975 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
Lima1Q9ERG0 Large2-215ENSMUST00000176810 2477 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
Lima1Q9ERG0 Wrb-201ENSMUST00000023913 2495 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Lima1Q9ERG0 Mrps18a-202ENSMUST00000123646 621 ntTSL 2 BASIC16.75■□□□□ 0.27
Lima1Q9ERG0 AC167978.1-201ENSMUST00000182488 456 ntTSL 3 BASIC16.75■□□□□ 0.27
Lima1Q9ERG0 Lca5l-202ENSMUST00000113804 3162 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
Lima1Q9ERG0 Wnt2b-201ENSMUST00000029429 3318 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Lima1Q9ERG0 Proc-201ENSMUST00000171765 1566 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
Lima1Q9ERG0 Tspyl2-201ENSMUST00000044509 2696 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Lima1Q9ERG0 Shroom3-201ENSMUST00000113051 6435 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Lima1Q9ERG0 Rab11fip3-202ENSMUST00000120691 5103 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
Lima1Q9ERG0 Rnf38-203ENSMUST00000102934 5240 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
Lima1Q9ERG0 Etnk1-201ENSMUST00000032413 6433 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Lima1Q9ERG0 Dlx1-201ENSMUST00000037119 4111 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Lima1Q9ERG0 Vstm5-201ENSMUST00000034413 1991 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Lima1Q9ERG0 Hif3a-201ENSMUST00000037762 2206 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
Lima1Q9ERG0 Tapt1-201ENSMUST00000055128 3513 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
Lima1Q9ERG0 Rab11fip4-201ENSMUST00000017783 7156 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Lima1Q9ERG0 Cacna2d2-203ENSMUST00000164988 5542 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
Lima1Q9ERG0 Matn4-201ENSMUST00000103103 2304 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Lima1Q9ERG0 Nectin3-202ENSMUST00000023335 9116 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Lima1Q9ERG0 Car9-201ENSMUST00000030183 2023 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Lima1Q9ERG0 Kcnk4-201ENSMUST00000025908 1715 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Lima1Q9ERG0 Cactin-201ENSMUST00000050867 2715 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Lima1Q9ERG0 Gm12473-201ENSMUST00000137535 579 ntTSL 5 BASIC16.74■□□□□ 0.27
Lima1Q9ERG0 Cox16-207ENSMUST00000169124 685 ntTSL 2 BASIC16.74■□□□□ 0.27
Lima1Q9ERG0 4930467K11Rik-201ENSMUST00000180831 723 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Lima1Q9ERG0 Gm19391-201ENSMUST00000196653 999 ntTSL 3 BASIC16.74■□□□□ 0.27
Lima1Q9ERG0 Gm20049-201ENSMUST00000219950 730 ntBASIC16.74■□□□□ 0.27
Lima1Q9ERG0 Tmem54-201ENSMUST00000030575 1064 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Lima1Q9ERG0 Ankrd17-203ENSMUST00000168058 9311 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
Lima1Q9ERG0 Htr3a-201ENSMUST00000003826 2082 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Lima1Q9ERG0 Clk4-201ENSMUST00000093132 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Lima1Q9ERG0 Stxbp3-205ENSMUST00000138552 1789 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Lima1Q9ERG0 Lrriq4-203ENSMUST00000172350 1797 ntAPPRIS P3 TSL 5 BASIC16.74■□□□□ 0.27
Lima1Q9ERG0 Tbc1d9-201ENSMUST00000034145 4631 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Lima1Q9ERG0 Fam72a-201ENSMUST00000068613 2191 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Lima1Q9ERG0 Slit1-201ENSMUST00000025993 5045 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Lima1Q9ERG0 Map4k5-201ENSMUST00000049239 4452 ntAPPRIS ALT1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Lima1Q9ERG0 Sphk1-206ENSMUST00000106388 1891 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
Lima1Q9ERG0 Taf6l-201ENSMUST00000003777 1869 ntTSL 5 BASIC16.73■□□□□ 0.27
Lima1Q9ERG0 Tbc1d19-201ENSMUST00000037337 2273 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Lima1Q9ERG0 Atg5-201ENSMUST00000039286 2352 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Lima1Q9ERG0 AW011738-201ENSMUST00000105140 1848 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
Lima1Q9ERG0 Zbtb24-202ENSMUST00000213797 2734 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Lima1Q9ERG0 Gm11249-201ENSMUST00000117071 859 ntBASIC16.73■□□□□ 0.27
Lima1Q9ERG0 1110065P20Rik-203ENSMUST00000137769 659 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Lima1Q9ERG0 Mir2861-201ENSMUST00000175539 82 ntBASIC16.73■□□□□ 0.27
Lima1Q9ERG0 6230400D17Rik-202ENSMUST00000224976 1019 ntBASIC16.73■□□□□ 0.27
Lima1Q9ERG0 Tpsb2-201ENSMUST00000069616 1081 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Lima1Q9ERG0 Plcl2-201ENSMUST00000043938 4050 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Lima1Q9ERG0 Snap91-204ENSMUST00000098495 4150 ntAPPRIS P4 TSL 1 (best) BASIC16.73■□□□□ 0.27
Lima1Q9ERG0 Mef2d-201ENSMUST00000001455 5401 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Lima1Q9ERG0 Acap3-202ENSMUST00000105584 4365 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Lima1Q9ERG0 Grwd1-201ENSMUST00000107723 1898 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Lima1Q9ERG0 Rgs7-203ENSMUST00000192227 2113 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
Lima1Q9ERG0 Pacsin3-202ENSMUST00000059566 1867 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Lima1Q9ERG0 Tcp1-209ENSMUST00000151287 2446 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Lima1Q9ERG0 Acvr2a-201ENSMUST00000063886 5686 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Lima1Q9ERG0 Arid3c-202ENSMUST00000150809 1327 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Lima1Q9ERG0 Gm18336-201ENSMUST00000180787 2298 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
Retrieved 100 of 76,532 protein–RNA pairs in 28.2 ms