Protein–RNA interactions for Protein: Q99LM2

Cdk5rap3, CDK5 regulatory subunit-associated protein 3, mousemouse

Predictions only

Length 503 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdk5rap3Q99LM2 Gm11273-201ENSMUST00000044043 390 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
Cdk5rap3Q99LM2 Ly6g6d-201ENSMUST00000007259 546 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Cdk5rap3Q99LM2 Tacc1-201ENSMUST00000084030 7788 ntAPPRIS P4 TSL 1 (best) BASIC17.58■□□□□ 0.4
Cdk5rap3Q99LM2 Htr5b-201ENSMUST00000055884 1935 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Cdk5rap3Q99LM2 Nudt4-201ENSMUST00000020217 3210 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Cdk5rap3Q99LM2 Marveld1-201ENSMUST00000061111 3066 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Cdk5rap3Q99LM2 Atf6b-202ENSMUST00000173984 2315 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
Cdk5rap3Q99LM2 Adcy5-201ENSMUST00000114913 7007 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Cdk5rap3Q99LM2 Baz1a-205ENSMUST00000173433 5788 ntAPPRIS P2 TSL 5 BASIC17.57■□□□□ 0.4
Cdk5rap3Q99LM2 Acbd6-201ENSMUST00000035560 5592 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Cdk5rap3Q99LM2 Rara-202ENSMUST00000107473 3238 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Cdk5rap3Q99LM2 Lgr6-201ENSMUST00000044828 6675 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Cdk5rap3Q99LM2 Plekha4-206ENSMUST00000211155 2044 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
Cdk5rap3Q99LM2 Shisa2-201ENSMUST00000053949 3119 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Cdk5rap3Q99LM2 Ino80e-203ENSMUST00000106343 1973 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Cdk5rap3Q99LM2 Nr1h2-201ENSMUST00000073488 1999 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
Cdk5rap3Q99LM2 Ccdc126-201ENSMUST00000055559 2351 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Cdk5rap3Q99LM2 C030014I23Rik-201ENSMUST00000080911 1810 ntBASIC17.57■□□□□ 0.4
Cdk5rap3Q99LM2 Gm16764-202ENSMUST00000148931 433 ntTSL 5 BASIC17.57■□□□□ 0.4
Cdk5rap3Q99LM2 1600023N17Rik-201ENSMUST00000196242 1007 ntBASIC17.57■□□□□ 0.4
Cdk5rap3Q99LM2 Atp5c1-201ENSMUST00000026887 1060 ntAPPRIS ALT1 TSL 5 BASIC17.57■□□□□ 0.4
Cdk5rap3Q99LM2 Syngr1-202ENSMUST00000009728 819 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Cdk5rap3Q99LM2 Eml1-203ENSMUST00000109860 4160 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Cdk5rap3Q99LM2 Etv6-201ENSMUST00000081028 5545 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
Cdk5rap3Q99LM2 Fezf1-201ENSMUST00000031709 2409 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Cdk5rap3Q99LM2 Enah-210ENSMUST00000193074 1971 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
Cdk5rap3Q99LM2 Kcna6-204ENSMUST00000185333 5836 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Cdk5rap3Q99LM2 Mal-202ENSMUST00000028854 2778 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Cdk5rap3Q99LM2 Grwd1-201ENSMUST00000107723 1898 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Cdk5rap3Q99LM2 Pacsin3-202ENSMUST00000059566 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Cdk5rap3Q99LM2 Aifm1-201ENSMUST00000037349 2237 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
Cdk5rap3Q99LM2 A930001A20Rik-201ENSMUST00000182586 1366 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Cdk5rap3Q99LM2 Fam71e1-202ENSMUST00000205359 1307 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
Cdk5rap3Q99LM2 Tox2-205ENSMUST00000165937 1675 ntAPPRIS P2 TSL 5 BASIC17.56■□□□□ 0.4
Cdk5rap3Q99LM2 Zfp142-201ENSMUST00000027315 6480 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Cdk5rap3Q99LM2 Naa10-205ENSMUST00000114390 797 ntTSL 5 BASIC17.56■□□□□ 0.4
Cdk5rap3Q99LM2 Mrps10-204ENSMUST00000120737 1017 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Cdk5rap3Q99LM2 Gm12441-201ENSMUST00000121806 588 ntBASIC17.56■□□□□ 0.4
Cdk5rap3Q99LM2 H2-K2-201ENSMUST00000174250 1049 ntBASIC17.56■□□□□ 0.4
Cdk5rap3Q99LM2 4833428L15Rik-202ENSMUST00000215652 641 ntTSL 3 BASIC17.56■□□□□ 0.4
Cdk5rap3Q99LM2 H2-Eb1-201ENSMUST00000074557 1184 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Cdk5rap3Q99LM2 Ube2s-201ENSMUST00000079496 1238 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Cdk5rap3Q99LM2 Lhfp-203ENSMUST00000147139 1932 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
Cdk5rap3Q99LM2 Tbx18-201ENSMUST00000034991 4679 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Cdk5rap3Q99LM2 Gm26526-201ENSMUST00000181075 2927 ntTSL 5 BASIC17.56■□□□□ 0.4
Cdk5rap3Q99LM2 Dtx2-201ENSMUST00000005072 2562 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
Cdk5rap3Q99LM2 Katnbl1-201ENSMUST00000028552 2886 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Cdk5rap3Q99LM2 Synpo-201ENSMUST00000097566 5060 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
Cdk5rap3Q99LM2 Gpaa1-201ENSMUST00000023221 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Cdk5rap3Q99LM2 Farsa-202ENSMUST00000109754 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Cdk5rap3Q99LM2 Cd5-201ENSMUST00000025571 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Cdk5rap3Q99LM2 Sox14-201ENSMUST00000054819 2065 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
Cdk5rap3Q99LM2 Mfsd4b1-201ENSMUST00000163705 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Cdk5rap3Q99LM2 Kcnk4-201ENSMUST00000025908 1715 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Cdk5rap3Q99LM2 Appl1-201ENSMUST00000036570 7642 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Cdk5rap3Q99LM2 Csnk1a1-206ENSMUST00000165721 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Cdk5rap3Q99LM2 Rab37-202ENSMUST00000067754 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Cdk5rap3Q99LM2 Ykt6-201ENSMUST00000002818 2541 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Cdk5rap3Q99LM2 4930461C15Rik-201ENSMUST00000133622 1302 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Cdk5rap3Q99LM2 Nadk2-203ENSMUST00000100790 3665 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
Cdk5rap3Q99LM2 Fhl1-203ENSMUST00000114769 2770 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Cdk5rap3Q99LM2 Brd3os-202ENSMUST00000209765 1898 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
Cdk5rap3Q99LM2 Etnk1-201ENSMUST00000032413 6433 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Cdk5rap3Q99LM2 AA465934-203ENSMUST00000177150 383 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Cdk5rap3Q99LM2 Rnf26-208ENSMUST00000185479 2964 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Cdk5rap3Q99LM2 Gm44899-201ENSMUST00000207451 391 ntTSL 3 BASIC17.55■□□□□ 0.4
Cdk5rap3Q99LM2 Kctd12-202ENSMUST00000184744 6057 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
Cdk5rap3Q99LM2 Nosip-201ENSMUST00000003513 1814 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
Cdk5rap3Q99LM2 Mbip-201ENSMUST00000021416 1512 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Cdk5rap3Q99LM2 Tmem131l-201ENSMUST00000052342 4815 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
Cdk5rap3Q99LM2 Igf2-205ENSMUST00000121128 4722 ntTSL 2 BASIC17.55■□□□□ 0.4
Cdk5rap3Q99LM2 Gm26803-201ENSMUST00000181705 2011 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Cdk5rap3Q99LM2 1600012H06Rik-203ENSMUST00000174004 1466 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Cdk5rap3Q99LM2 1700066B19Rik-201ENSMUST00000097617 2504 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Cdk5rap3Q99LM2 Dusp4-201ENSMUST00000033930 2740 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Cdk5rap3Q99LM2 Nrn1-203ENSMUST00000223611 1443 ntBASIC17.55■□□□□ 0.4
Cdk5rap3Q99LM2 Fcho1-209ENSMUST00000146100 3188 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Cdk5rap3Q99LM2 Prodh-201ENSMUST00000003620 2385 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Cdk5rap3Q99LM2 2610301B20Rik-201ENSMUST00000080517 2116 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Cdk5rap3Q99LM2 Plcl1-201ENSMUST00000042986 6580 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Cdk5rap3Q99LM2 Praf2-201ENSMUST00000033489 1339 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Cdk5rap3Q99LM2 Mfsd12-201ENSMUST00000044844 3971 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Cdk5rap3Q99LM2 Coro2a-202ENSMUST00000107756 4154 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
Cdk5rap3Q99LM2 Gm9694-201ENSMUST00000193347 1189 ntBASIC17.54■□□□□ 0.4
Cdk5rap3Q99LM2 Gm43183-201ENSMUST00000200632 547 ntBASIC17.54■□□□□ 0.4
Cdk5rap3Q99LM2 Fam126a-201ENSMUST00000030849 5659 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Cdk5rap3Q99LM2 Trim7-201ENSMUST00000046903 2161 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
Cdk5rap3Q99LM2 Ormdl3-201ENSMUST00000052919 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Cdk5rap3Q99LM2 Cdk17-201ENSMUST00000069965 3615 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Cdk5rap3Q99LM2 Trim31-201ENSMUST00000078438 2257 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Cdk5rap3Q99LM2 Ccdc106-204ENSMUST00000207974 2492 ntTSL 2 BASIC17.54■□□□□ 0.4
Cdk5rap3Q99LM2 Evx1-201ENSMUST00000031787 2877 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Cdk5rap3Q99LM2 Mief1-203ENSMUST00000228788 5352 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
Cdk5rap3Q99LM2 Matr3-214ENSMUST00000190029 2845 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
Cdk5rap3Q99LM2 Timm44-201ENSMUST00000003029 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Cdk5rap3Q99LM2 Gm36858-201ENSMUST00000194501 2391 ntBASIC17.53■□□□□ 0.4
Cdk5rap3Q99LM2 Wnt10b-207ENSMUST00000228594 1510 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
Cdk5rap3Q99LM2 Fosl1-201ENSMUST00000025850 1707 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Cdk5rap3Q99LM2 Ccnd3-202ENSMUST00000171031 2113 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
Cdk5rap3Q99LM2 Large2-215ENSMUST00000176810 2477 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
Retrieved 100 of 76,532 protein–RNA pairs in 50.1 ms