Protein–RNA interactions for Protein: Q8VEE4

Rpa1, Replication protein A 70 kDa DNA-binding subunit, mousemouse

Known RBP Predictions only

Length 623 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rpa1Q8VEE4 Pigz-201ENSMUST00000052174 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Rpa1Q8VEE4 Higd1a-201ENSMUST00000060251 2232 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Rpa1Q8VEE4 Osbpl1a-206ENSMUST00000121774 2931 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Rpa1Q8VEE4 Rnpep-202ENSMUST00000077340 2288 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Rpa1Q8VEE4 Cachd1-202ENSMUST00000097955 4277 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Rpa1Q8VEE4 Ptpro-203ENSMUST00000167679 5096 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Rpa1Q8VEE4 Atg5-201ENSMUST00000039286 2352 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Rpa1Q8VEE4 Large2-215ENSMUST00000176810 2477 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
Rpa1Q8VEE4 Pde8b-201ENSMUST00000022192 2517 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
Rpa1Q8VEE4 Wapl-201ENSMUST00000048263 6351 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
Rpa1Q8VEE4 Ptpdc1-201ENSMUST00000035824 4402 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Rpa1Q8VEE4 Naa35-201ENSMUST00000022038 3793 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Rpa1Q8VEE4 Gm34933-201ENSMUST00000203245 1067 ntTSL 5 BASIC17.1■□□□□ 0.33
Rpa1Q8VEE4 Gm39115-201ENSMUST00000211350 699 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
Rpa1Q8VEE4 Snrpc-201ENSMUST00000071006 870 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Rpa1Q8VEE4 Zfp783-201ENSMUST00000095946 670 ntBASIC17.1■□□□□ 0.33
Rpa1Q8VEE4 Fam185a-201ENSMUST00000056045 3027 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Rpa1Q8VEE4 Zdhhc6-207ENSMUST00000224897 2168 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
Rpa1Q8VEE4 Matn4-201ENSMUST00000103103 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Rpa1Q8VEE4 Tfeb-204ENSMUST00000113288 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Rpa1Q8VEE4 Map2k5-201ENSMUST00000034920 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Rpa1Q8VEE4 Snx30-201ENSMUST00000030080 7314 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Rpa1Q8VEE4 Snapc2-201ENSMUST00000011981 1536 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Rpa1Q8VEE4 Tuba3a-201ENSMUST00000088246 1509 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Rpa1Q8VEE4 Actr3-201ENSMUST00000027579 2554 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
Rpa1Q8VEE4 Rrp9-201ENSMUST00000047721 1586 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Rpa1Q8VEE4 Fcgrt-201ENSMUST00000003512 1770 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Rpa1Q8VEE4 App-201ENSMUST00000005406 3176 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Rpa1Q8VEE4 Ermp1-203ENSMUST00000159692 7058 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Rpa1Q8VEE4 Atoh1-201ENSMUST00000101351 2121 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
Rpa1Q8VEE4 Gm6583-201ENSMUST00000051117 2233 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
Rpa1Q8VEE4 Wrb-201ENSMUST00000023913 2495 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Rpa1Q8VEE4 Coch-202ENSMUST00000164782 2681 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Rpa1Q8VEE4 E130307A14Rik-213ENSMUST00000155482 2803 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Rpa1Q8VEE4 Knl1-201ENSMUST00000028799 5527 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Rpa1Q8VEE4 Pacsin2-203ENSMUST00000171436 3693 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
Rpa1Q8VEE4 Abl1-202ENSMUST00000075759 6327 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Rpa1Q8VEE4 AV026068-204ENSMUST00000186214 633 ntTSL 2 BASIC17.09■□□□□ 0.33
Rpa1Q8VEE4 Cck-203ENSMUST00000215228 783 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Rpa1Q8VEE4 4930505A04Rik-201ENSMUST00000041763 904 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
Rpa1Q8VEE4 Fabp3-201ENSMUST00000070532 823 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Rpa1Q8VEE4 Oxr1-206ENSMUST00000170127 4251 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Rpa1Q8VEE4 Ank1-209ENSMUST00000121802 8218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Rpa1Q8VEE4 Cacna1h-205ENSMUST00000159610 8230 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Rpa1Q8VEE4 Cacna1h-201ENSMUST00000078496 8220 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Rpa1Q8VEE4 Gm18336-201ENSMUST00000180787 2298 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
Rpa1Q8VEE4 Hdac2-202ENSMUST00000105510 3250 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Rpa1Q8VEE4 Mapk8ip3-205ENSMUST00000119115 4173 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Rpa1Q8VEE4 Dach1-201ENSMUST00000069334 5063 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Rpa1Q8VEE4 Zic5-201ENSMUST00000039118 4767 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Rpa1Q8VEE4 Nipa2-201ENSMUST00000032635 3197 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Rpa1Q8VEE4 Adss-201ENSMUST00000016105 2771 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Rpa1Q8VEE4 Zbtb16-202ENSMUST00000216150 2505 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Rpa1Q8VEE4 Smim3-201ENSMUST00000042710 1984 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Rpa1Q8VEE4 Sars2-201ENSMUST00000094632 1868 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Rpa1Q8VEE4 Nipsnap3b-201ENSMUST00000015391 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Rpa1Q8VEE4 Stox2-208ENSMUST00000211737 4573 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Rpa1Q8VEE4 Gm2399-201ENSMUST00000104944 225 ntBASIC17.08■□□□□ 0.32
Rpa1Q8VEE4 Gpx4-202ENSMUST00000105372 959 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Rpa1Q8VEE4 Yjefn3-203ENSMUST00000180068 629 ntTSL 5 BASIC17.08■□□□□ 0.32
Rpa1Q8VEE4 Nfu1-201ENSMUST00000032060 948 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
Rpa1Q8VEE4 Gsk3b-201ENSMUST00000023507 8303 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
Rpa1Q8VEE4 Tacc1-201ENSMUST00000084030 7788 ntAPPRIS P4 TSL 1 (best) BASIC17.08■□□□□ 0.32
Rpa1Q8VEE4 Tmtc4-204ENSMUST00000126867 2952 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
Rpa1Q8VEE4 Bcr-201ENSMUST00000164107 6839 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Rpa1Q8VEE4 Klf9-201ENSMUST00000036884 3263 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Rpa1Q8VEE4 Sept10-203ENSMUST00000220156 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Rpa1Q8VEE4 Ttc39b-202ENSMUST00000048274 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Rpa1Q8VEE4 Gda-201ENSMUST00000087600 5428 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Rpa1Q8VEE4 Gm19721-201ENSMUST00000195284 1764 ntBASIC17.07■□□□□ 0.32
Rpa1Q8VEE4 Casc3-201ENSMUST00000017384 3963 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
Rpa1Q8VEE4 Slc32a1-201ENSMUST00000045738 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Rpa1Q8VEE4 Emc8-201ENSMUST00000034277 4942 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Rpa1Q8VEE4 Pten-201ENSMUST00000013807 8292 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Rpa1Q8VEE4 Tnfaip2-202ENSMUST00000109792 3284 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Rpa1Q8VEE4 Chn1-203ENSMUST00000112024 4050 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Rpa1Q8VEE4 Chn1-210ENSMUST00000180045 4050 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Rpa1Q8VEE4 Tomm6-202ENSMUST00000113302 749 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Rpa1Q8VEE4 Mir2861-201ENSMUST00000175539 82 ntBASIC17.07■□□□□ 0.32
Rpa1Q8VEE4 Gm29019-202ENSMUST00000188623 564 ntTSL 2 BASIC17.07■□□□□ 0.32
Rpa1Q8VEE4 Lmo1-202ENSMUST00000207178 912 ntAPPRIS ALT1 TSL 2 BASIC17.07■□□□□ 0.32
Rpa1Q8VEE4 Ppp4r3a-201ENSMUST00000048305 4516 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Rpa1Q8VEE4 Npffr1-201ENSMUST00000020287 3479 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
Rpa1Q8VEE4 Fdxr-201ENSMUST00000021078 1948 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Rpa1Q8VEE4 2810425M01Rik-201ENSMUST00000180790 1850 ntTSL 5 BASIC17.07■□□□□ 0.32
Rpa1Q8VEE4 Gm28372-201ENSMUST00000188900 1876 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
Rpa1Q8VEE4 Acads-201ENSMUST00000031524 1870 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Rpa1Q8VEE4 Ptprd-206ENSMUST00000107289 9899 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
Rpa1Q8VEE4 Tcp1-209ENSMUST00000151287 2446 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Rpa1Q8VEE4 Rnf168-203ENSMUST00000171474 4460 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Rpa1Q8VEE4 Slc6a17-208ENSMUST00000169449 6322 ntAPPRIS ALT1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Rpa1Q8VEE4 Slc6a17-201ENSMUST00000029499 6308 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
Rpa1Q8VEE4 Dsg2-202ENSMUST00000120102 3590 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Rpa1Q8VEE4 Zpbp-201ENSMUST00000020413 4248 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Rpa1Q8VEE4 Rhpn2-201ENSMUST00000032705 3508 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Rpa1Q8VEE4 Chpf-201ENSMUST00000079205 2892 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Rpa1Q8VEE4 Mapt-202ENSMUST00000106988 2202 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
Rpa1Q8VEE4 Haspin-201ENSMUST00000052140 2810 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
Rpa1Q8VEE4 Slc8a3-202ENSMUST00000085238 4927 ntAPPRIS ALT1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Rpa1Q8VEE4 Itga6-201ENSMUST00000028522 4310 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 22 ms