Protein–RNA interactions for Protein: Q6P1Y1

Rtl3, Retrotransposon Gag-like protein 3, mousemouse

Predictions only

Length 553 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rtl3Q6P1Y1 Spdya-202ENSMUST00000124001 1247 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Rtl3Q6P1Y1 Cdpf1-204ENSMUST00000144067 761 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
Rtl3Q6P1Y1 Gm17949-201ENSMUST00000210548 1179 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
Rtl3Q6P1Y1 Clcn2-202ENSMUST00000120099 2812 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
Rtl3Q6P1Y1 Stambpl1-201ENSMUST00000054956 2024 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Rtl3Q6P1Y1 Dlgap4-212ENSMUST00000169464 4851 ntTSL 5 BASIC17.53■□□□□ 0.4
Rtl3Q6P1Y1 Ntrk1-201ENSMUST00000029712 2588 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Rtl3Q6P1Y1 Pde3b-201ENSMUST00000032909 6573 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Rtl3Q6P1Y1 Dbn1-202ENSMUST00000109921 2378 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Rtl3Q6P1Y1 Rev1-201ENSMUST00000027251 4262 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Rtl3Q6P1Y1 Rbpms-213ENSMUST00000191473 2547 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Rtl3Q6P1Y1 Gm42417-201ENSMUST00000191849 2256 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Rtl3Q6P1Y1 Sars2-201ENSMUST00000094632 1868 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Rtl3Q6P1Y1 Stk3-201ENSMUST00000018476 2914 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
Rtl3Q6P1Y1 Bdkrb1-202ENSMUST00000182899 1313 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
Rtl3Q6P1Y1 Bdkrb1-201ENSMUST00000041229 1338 ntAPPRIS P1 BASIC17.52■□□□□ 0.4
Rtl3Q6P1Y1 Map3k7cl-201ENSMUST00000026700 1652 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Rtl3Q6P1Y1 Kcnab3-201ENSMUST00000018614 2538 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Rtl3Q6P1Y1 1600012H06Rik-201ENSMUST00000052691 2506 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Rtl3Q6P1Y1 Ffar3-201ENSMUST00000094583 1625 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Rtl3Q6P1Y1 Cul4a-202ENSMUST00000121426 1044 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Rtl3Q6P1Y1 Cenps-207ENSMUST00000177408 689 ntTSL 2 BASIC17.52■□□□□ 0.4
Rtl3Q6P1Y1 Flg-203ENSMUST00000178695 777 ntAPPRIS P5 BASIC17.52■□□□□ 0.4
Rtl3Q6P1Y1 Gm9745-201ENSMUST00000021573 684 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
Rtl3Q6P1Y1 Arfip2-202ENSMUST00000084782 2254 ntAPPRIS P2 TSL 5 BASIC17.52■□□□□ 0.4
Rtl3Q6P1Y1 Gtf3a-201ENSMUST00000132102 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
Rtl3Q6P1Y1 Dnaaf5-203ENSMUST00000196441 2426 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Rtl3Q6P1Y1 Cacna1h-205ENSMUST00000159610 8230 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
Rtl3Q6P1Y1 Cacna1h-201ENSMUST00000078496 8220 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.39
Rtl3Q6P1Y1 5031425F14Rik-201ENSMUST00000127920 2098 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
Rtl3Q6P1Y1 Proser2-201ENSMUST00000054254 2061 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Rtl3Q6P1Y1 Ostm1-201ENSMUST00000040718 3006 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Rtl3Q6P1Y1 Strn-203ENSMUST00000145910 8629 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Rtl3Q6P1Y1 Eme2-202ENSMUST00000121542 1521 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Rtl3Q6P1Y1 Praf2-201ENSMUST00000033489 1339 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Rtl3Q6P1Y1 Kdm1a-202ENSMUST00000105847 3028 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
Rtl3Q6P1Y1 Sfrp4-201ENSMUST00000002883 1764 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Rtl3Q6P1Y1 Eif4enif1-203ENSMUST00000110049 3614 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Rtl3Q6P1Y1 Stam2-202ENSMUST00000127316 1928 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Rtl3Q6P1Y1 Prmt2-202ENSMUST00000099571 2052 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
Rtl3Q6P1Y1 Prex1-201ENSMUST00000036719 6533 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Rtl3Q6P1Y1 Vgf-204ENSMUST00000190827 2834 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Rtl3Q6P1Y1 Mtg2-202ENSMUST00000108901 1444 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
Rtl3Q6P1Y1 Lmo4-203ENSMUST00000121796 1417 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Rtl3Q6P1Y1 9430097D07Rik-201ENSMUST00000100190 1501 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
Rtl3Q6P1Y1 Htr5b-201ENSMUST00000055884 1935 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Rtl3Q6P1Y1 Nudt16-201ENSMUST00000035179 1631 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Rtl3Q6P1Y1 Nxnl1-201ENSMUST00000048243 2285 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
Rtl3Q6P1Y1 Slc5a10-201ENSMUST00000051552 2261 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Rtl3Q6P1Y1 Abhd10-201ENSMUST00000066983 2848 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Rtl3Q6P1Y1 4930448E22Rik-201ENSMUST00000181712 1581 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Rtl3Q6P1Y1 Gm26884-201ENSMUST00000181207 3074 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Rtl3Q6P1Y1 Polr3h-201ENSMUST00000023113 2514 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Rtl3Q6P1Y1 Myo5b-201ENSMUST00000074157 6745 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Rtl3Q6P1Y1 Gm10013-201ENSMUST00000106074 672 ntBASIC17.5■□□□□ 0.39
Rtl3Q6P1Y1 Tlcd2-202ENSMUST00000108435 1112 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Rtl3Q6P1Y1 Tekt5-202ENSMUST00000115831 1277 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
Rtl3Q6P1Y1 Mir142hg-201ENSMUST00000123700 269 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Rtl3Q6P1Y1 Inmt-201ENSMUST00000003569 1077 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Rtl3Q6P1Y1 Pldi-201ENSMUST00000036304 853 ntTSL 2 BASIC17.5■□□□□ 0.39
Rtl3Q6P1Y1 Tsr3-201ENSMUST00000063574 1192 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Rtl3Q6P1Y1 Ccdc102a-201ENSMUST00000077955 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Rtl3Q6P1Y1 Farsa-202ENSMUST00000109754 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Rtl3Q6P1Y1 Nrl-201ENSMUST00000062232 2504 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Rtl3Q6P1Y1 Il17re-208ENSMUST00000204774 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Rtl3Q6P1Y1 Acvr1c-204ENSMUST00000112608 1497 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
Rtl3Q6P1Y1 Cdipt-201ENSMUST00000032920 1974 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Rtl3Q6P1Y1 Vps53-203ENSMUST00000108419 2209 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Rtl3Q6P1Y1 Apaf1-208ENSMUST00000162618 5151 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Rtl3Q6P1Y1 Cobll1-205ENSMUST00000112431 5024 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Rtl3Q6P1Y1 Stox1-202ENSMUST00000133371 3510 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Rtl3Q6P1Y1 Phtf1-203ENSMUST00000090685 3006 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Rtl3Q6P1Y1 Rab40c-207ENSMUST00000167626 2506 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Rtl3Q6P1Y1 Pitpnm1-201ENSMUST00000049658 4206 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Rtl3Q6P1Y1 Hnrnpu-201ENSMUST00000037748 7640 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Rtl3Q6P1Y1 Ptprt-201ENSMUST00000109441 6623 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Rtl3Q6P1Y1 Hmga1-206ENSMUST00000119486 1003 ntAPPRIS P3 TSL 2 BASIC17.49■□□□□ 0.39
Rtl3Q6P1Y1 Lyzl4-202ENSMUST00000120918 959 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Rtl3Q6P1Y1 Gm13474-201ENSMUST00000122466 815 ntBASIC17.49■□□□□ 0.39
Rtl3Q6P1Y1 Ccdc125-202ENSMUST00000170347 1216 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Rtl3Q6P1Y1 Arpc4-204ENSMUST00000204802 794 ntTSL 3 BASIC17.49■□□□□ 0.39
Rtl3Q6P1Y1 Grtp1-204ENSMUST00000209691 1030 ntTSL 5 BASIC17.49■□□□□ 0.39
Rtl3Q6P1Y1 Olfr279-201ENSMUST00000050451 933 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
Rtl3Q6P1Y1 4930465K10Rik-201ENSMUST00000056675 1238 ntBASIC17.49■□□□□ 0.39
Rtl3Q6P1Y1 Ltbp4-202ENSMUST00000108369 5377 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
Rtl3Q6P1Y1 Rab1a-201ENSMUST00000020358 2827 ntAPPRIS ALT1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Rtl3Q6P1Y1 Bmp8a-201ENSMUST00000040496 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Rtl3Q6P1Y1 Cspg5-202ENSMUST00000196060 3790 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Rtl3Q6P1Y1 Med18-201ENSMUST00000102567 1675 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Rtl3Q6P1Y1 Rasa2-201ENSMUST00000034984 5813 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Rtl3Q6P1Y1 March3-202ENSMUST00000102912 1754 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Rtl3Q6P1Y1 Bmi1-201ENSMUST00000028071 3594 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Rtl3Q6P1Y1 Sh3glb1-202ENSMUST00000198254 5945 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Rtl3Q6P1Y1 Tmem60-201ENSMUST00000115259 1147 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Rtl3Q6P1Y1 Pabpc1l2b-ps-201ENSMUST00000124538 690 ntBASIC17.48■□□□□ 0.39
Rtl3Q6P1Y1 Gm6728-201ENSMUST00000178117 1065 ntBASIC17.48■□□□□ 0.39
Rtl3Q6P1Y1 4930544I03Rik-201ENSMUST00000181184 1276 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Rtl3Q6P1Y1 Cldn22-201ENSMUST00000038693 995 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
Rtl3Q6P1Y1 Tmem205-201ENSMUST00000046831 785 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Rtl3Q6P1Y1 Iqsec1-202ENSMUST00000101153 8036 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
Retrieved 100 of 76,532 protein–RNA pairs in 30.4 ms