Protein–RNA interactions for Protein: Q5I043

Usp28, Ubiquitin carboxyl-terminal hydrolase 28, mousemouse

Predictions only

Length 1,051 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp28Q5I043 Crtac1-201ENSMUST00000048630 2616 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Usp28Q5I043 Pex5-202ENSMUST00000080557 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Usp28Q5I043 Gm3488-202ENSMUST00000181562 1945 ntAPPRIS P5 TSL 5 BASIC19.27■□□□□ 0.67
Usp28Q5I043 Arhgef17-204ENSMUST00000209041 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.67
Usp28Q5I043 Ap2a2-201ENSMUST00000003038 4646 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Usp28Q5I043 Wnk2-205ENSMUST00000110097 6882 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.67
Usp28Q5I043 Wnk2-203ENSMUST00000091623 6897 ntAPPRIS P4 TSL 5 BASIC19.27■□□□□ 0.67
Usp28Q5I043 Map6-207ENSMUST00000208924 2906 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.67
Usp28Q5I043 Wrb-201ENSMUST00000023913 2495 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Usp28Q5I043 Ankra2-204ENSMUST00000150352 2217 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
Usp28Q5I043 Krt83-201ENSMUST00000023718 1756 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Usp28Q5I043 Ikbke-204ENSMUST00000161764 2867 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Usp28Q5I043 Gm9821-201ENSMUST00000178895 1953 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
Usp28Q5I043 Tbcel-201ENSMUST00000066148 5000 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Usp28Q5I043 Ifrd2-201ENSMUST00000010192 2056 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Usp28Q5I043 Ago4-201ENSMUST00000084289 6537 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Usp28Q5I043 Cdh24-201ENSMUST00000067784 3489 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
Usp28Q5I043 Efnb2-201ENSMUST00000001319 4793 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Usp28Q5I043 Sclt1-201ENSMUST00000026866 3005 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
Usp28Q5I043 Ctu1-201ENSMUST00000038332 2475 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Usp28Q5I043 Lonp2-201ENSMUST00000034141 2860 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Usp28Q5I043 Sptbn4-201ENSMUST00000011895 8747 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Usp28Q5I043 Rnf26-208ENSMUST00000185479 2964 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Usp28Q5I043 Rpl18-202ENSMUST00000209287 1027 ntTSL 3 BASIC19.26■□□□□ 0.67
Usp28Q5I043 CT025689.6-201ENSMUST00000224991 1104 ntBASIC19.26■□□□□ 0.67
Usp28Q5I043 Ntpcr-201ENSMUST00000034313 1155 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Usp28Q5I043 Comp-201ENSMUST00000003659 2416 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Usp28Q5I043 Fiz1-201ENSMUST00000077385 2546 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Usp28Q5I043 Fam219b-202ENSMUST00000114200 3017 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Usp28Q5I043 Prmt2-202ENSMUST00000099571 2052 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
Usp28Q5I043 Irak1-201ENSMUST00000033769 2890 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Usp28Q5I043 Psmd4-202ENSMUST00000107237 1332 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
Usp28Q5I043 Adrb3-202ENSMUST00000117565 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Usp28Q5I043 Hap1-201ENSMUST00000103124 2120 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
Usp28Q5I043 Map2k5-201ENSMUST00000034920 2310 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Usp28Q5I043 Celf3-208ENSMUST00000198316 2505 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Usp28Q5I043 Agtr1a-201ENSMUST00000066412 2199 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Usp28Q5I043 Cnpy1-202ENSMUST00000118882 1984 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Usp28Q5I043 Rbpj-203ENSMUST00000113865 5440 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Usp28Q5I043 Zhx1-202ENSMUST00000110168 5212 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
Usp28Q5I043 Tmem127-201ENSMUST00000035871 4811 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Usp28Q5I043 Gm12085-201ENSMUST00000119263 940 ntBASIC19.25■□□□□ 0.67
Usp28Q5I043 Tlx1os-201ENSMUST00000173437 620 ntTSL 3 BASIC19.25■□□□□ 0.67
Usp28Q5I043 Smim22-201ENSMUST00000178155 429 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
Usp28Q5I043 D130020L05Rik-202ENSMUST00000220889 769 ntTSL 3 BASIC19.25■□□□□ 0.67
Usp28Q5I043 AC175538.1-201ENSMUST00000225343 1269 ntBASIC19.25■□□□□ 0.67
Usp28Q5I043 Dctn3-201ENSMUST00000030158 973 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Usp28Q5I043 Agk-201ENSMUST00000031977 2531 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Usp28Q5I043 Scrt1-202ENSMUST00000164703 3478 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
Usp28Q5I043 Mon1a-201ENSMUST00000035202 2042 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Usp28Q5I043 Gm10435-202ENSMUST00000162526 2878 ntTSL 5 BASIC19.25■□□□□ 0.67
Usp28Q5I043 Mycl-201ENSMUST00000030407 3501 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Usp28Q5I043 Cadm1-204ENSMUST00000114548 4482 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Usp28Q5I043 Pagr1a-202ENSMUST00000200948 1430 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Usp28Q5I043 Gm42742-205ENSMUST00000202798 1412 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Usp28Q5I043 Ergic3-202ENSMUST00000088650 1349 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Usp28Q5I043 Cog6-204ENSMUST00000193432 2078 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Usp28Q5I043 Pitpnm1-201ENSMUST00000049658 4206 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Usp28Q5I043 Epm2a-201ENSMUST00000069106 3287 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Usp28Q5I043 B4galt3-205ENSMUST00000126699 1758 ntTSL 5 BASIC19.24■□□□□ 0.67
Usp28Q5I043 Rassf1-202ENSMUST00000093786 1787 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Usp28Q5I043 Prss53-202ENSMUST00000205300 1662 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Usp28Q5I043 Mgat1-201ENSMUST00000081794 2976 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Usp28Q5I043 Atp2c1-204ENSMUST00000112558 5642 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
Usp28Q5I043 Clstn2-201ENSMUST00000035027 4365 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Usp28Q5I043 Hist1h4c-201ENSMUST00000102967 820 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
Usp28Q5I043 Unc50-203ENSMUST00000118059 1179 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
Usp28Q5I043 Gm29257-201ENSMUST00000186115 639 ntBASIC19.24■□□□□ 0.67
Usp28Q5I043 A930018P22Rik-201ENSMUST00000040374 822 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Usp28Q5I043 Prmt1-201ENSMUST00000045325 1071 ntTSL 5 BASIC19.24■□□□□ 0.67
Usp28Q5I043 Cldn24-201ENSMUST00000079639 663 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
Usp28Q5I043 Slc6a8-206ENSMUST00000164449 2151 ntTSL 5 BASIC19.24■□□□□ 0.67
Usp28Q5I043 Fbxo9-202ENSMUST00000085311 2155 ntAPPRIS ALT1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Usp28Q5I043 Gm7712-202ENSMUST00000222331 1510 ntBASIC19.24■□□□□ 0.67
Usp28Q5I043 Garem1-201ENSMUST00000049260 4923 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Usp28Q5I043 Rab7-203ENSMUST00000113597 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Usp28Q5I043 Trim44-201ENSMUST00000102573 5612 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Usp28Q5I043 Abhd16a-201ENSMUST00000007251 1945 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Usp28Q5I043 Dtx2-203ENSMUST00000111144 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Usp28Q5I043 Fscn1-207ENSMUST00000198017 2157 ntTSL 5 BASIC19.23■□□□□ 0.67
Usp28Q5I043 Gnas-222ENSMUST00000180362 1645 ntTSL 5 BASIC19.23■□□□□ 0.67
Usp28Q5I043 Dtx2-204ENSMUST00000111145 2493 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Usp28Q5I043 Mcoln2-202ENSMUST00000098524 2492 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Usp28Q5I043 Rbm39-202ENSMUST00000109584 667 ntTSL 5 BASIC19.23■□□□□ 0.67
Usp28Q5I043 Serf1-204ENSMUST00000151821 570 ntTSL 2 BASIC19.23■□□□□ 0.67
Usp28Q5I043 Igflr1-202ENSMUST00000172251 1224 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Usp28Q5I043 Cck-204ENSMUST00000216138 799 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Usp28Q5I043 Elf2-202ENSMUST00000091144 2366 ntTSL 5 BASIC19.23■□□□□ 0.67
Usp28Q5I043 Casp3-201ENSMUST00000093517 1520 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Usp28Q5I043 Slc25a23-201ENSMUST00000040280 3362 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Usp28Q5I043 Inpp5e-202ENSMUST00000114090 2790 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Usp28Q5I043 Zfp804a-201ENSMUST00000047527 4620 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Usp28Q5I043 Tnfrsf25-201ENSMUST00000025706 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Usp28Q5I043 Zdhhc1-203ENSMUST00000212303 2056 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Usp28Q5I043 Mis18bp1-208ENSMUST00000222244 2053 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Usp28Q5I043 9530068E07Rik-201ENSMUST00000036952 2467 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Usp28Q5I043 Sgta-201ENSMUST00000005067 1969 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Usp28Q5I043 4930426L09Rik-201ENSMUST00000028069 1459 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
Usp28Q5I043 Lrrtm1-203ENSMUST00000161677 2518 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Usp28Q5I043 Hoxb2-201ENSMUST00000100523 1628 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Retrieved 100 of 76,532 protein–RNA pairs in 48.9 ms