Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Otud7a-201ENSMUST00000058476 3483 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Upf3aQ3ULJ3 Crocc-201ENSMUST00000040222 6248 ntTSL 5 BASIC17.81■□□□□ 0.44
Upf3aQ3ULJ3 Arid3b-202ENSMUST00000098686 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Upf3aQ3ULJ3 Epn1-202ENSMUST00000098845 2565 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Upf3aQ3ULJ3 Gm128-202ENSMUST00000107197 1289 ntTSL 2 BASIC17.81■□□□□ 0.44
Upf3aQ3ULJ3 Gm13884-201ENSMUST00000118103 829 ntBASIC17.81■□□□□ 0.44
Upf3aQ3ULJ3 Cgrrf1-204ENSMUST00000140114 419 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Upf3aQ3ULJ3 Apopt1-204ENSMUST00000163220 671 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
Upf3aQ3ULJ3 Gm29707-201ENSMUST00000196325 491 ntBASIC17.81■□□□□ 0.44
Upf3aQ3ULJ3 Shisa5-218ENSMUST00000200515 1005 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Upf3aQ3ULJ3 Arhgap33-206ENSMUST00000208522 781 ntTSL 3 BASIC17.81■□□□□ 0.44
Upf3aQ3ULJ3 Srrd-201ENSMUST00000031289 1110 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Upf3aQ3ULJ3 Mfsd14a-201ENSMUST00000029570 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Upf3aQ3ULJ3 Wnt10b-204ENSMUST00000226655 1807 ntBASIC17.81■□□□□ 0.44
Upf3aQ3ULJ3 Tmem44-204ENSMUST00000140402 2405 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Upf3aQ3ULJ3 Ispd-207ENSMUST00000223205 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Upf3aQ3ULJ3 Tmed4-201ENSMUST00000004508 2003 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Upf3aQ3ULJ3 Mprip-203ENSMUST00000108751 4021 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Upf3aQ3ULJ3 Ppfia1-201ENSMUST00000168134 5181 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
Upf3aQ3ULJ3 Slc43a1-202ENSMUST00000111624 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Upf3aQ3ULJ3 Mff-202ENSMUST00000078332 1894 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Upf3aQ3ULJ3 Vrk2-201ENSMUST00000078362 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Upf3aQ3ULJ3 Evc-202ENSMUST00000114148 2119 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Upf3aQ3ULJ3 Mtif3-201ENSMUST00000016654 2131 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Upf3aQ3ULJ3 Trim14-202ENSMUST00000102924 1582 ntTSL 2 BASIC17.8■□□□□ 0.44
Upf3aQ3ULJ3 Fzd5-202ENSMUST00000116133 2895 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Upf3aQ3ULJ3 Mfsd4a-203ENSMUST00000112370 2565 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Upf3aQ3ULJ3 Nsmf-204ENSMUST00000102931 2830 ntTSL 5 BASIC17.8■□□□□ 0.44
Upf3aQ3ULJ3 Gm11373-201ENSMUST00000129791 2819 ntTSL 5 BASIC17.8■□□□□ 0.44
Upf3aQ3ULJ3 Klk12-202ENSMUST00000107970 1115 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
Upf3aQ3ULJ3 Gmnn-202ENSMUST00000110382 963 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Upf3aQ3ULJ3 Slbp-205ENSMUST00000139518 1191 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
Upf3aQ3ULJ3 Ssr2-205ENSMUST00000193934 569 ntTSL 3 BASIC17.8■□□□□ 0.44
Upf3aQ3ULJ3 Ank1-201ENSMUST00000033947 1030 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Upf3aQ3ULJ3 Slc25a43-201ENSMUST00000047655 1111 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Upf3aQ3ULJ3 Sec61b-201ENSMUST00000065678 564 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Upf3aQ3ULJ3 Cdkl3-207ENSMUST00000109080 2749 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Upf3aQ3ULJ3 Rnf26-201ENSMUST00000056328 2724 ntAPPRIS P2 BASIC17.8■□□□□ 0.44
Upf3aQ3ULJ3 Zfp623-201ENSMUST00000037260 2463 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Upf3aQ3ULJ3 Dtx3-202ENSMUST00000116229 1994 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Upf3aQ3ULJ3 Arpc5-201ENSMUST00000077755 1914 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Upf3aQ3ULJ3 Dhx36-201ENSMUST00000029336 5620 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Upf3aQ3ULJ3 Gm5828-201ENSMUST00000071842 1860 ntBASIC17.8■□□□□ 0.44
Upf3aQ3ULJ3 Adgrv1-207ENSMUST00000128585 2580 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Upf3aQ3ULJ3 Myo1b-203ENSMUST00000114537 4618 ntTSL 5 BASIC17.79■□□□□ 0.44
Upf3aQ3ULJ3 C1ql3-201ENSMUST00000061545 2535 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Upf3aQ3ULJ3 Ap1s1-201ENSMUST00000111080 1353 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Upf3aQ3ULJ3 Cd302-202ENSMUST00000074606 1354 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Upf3aQ3ULJ3 Trib3-201ENSMUST00000040312 2026 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Upf3aQ3ULJ3 Htr5b-201ENSMUST00000055884 1935 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Upf3aQ3ULJ3 Zfp133-ps-202ENSMUST00000124788 1079 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Upf3aQ3ULJ3 Gm16272-201ENSMUST00000128218 388 ntTSL 2 BASIC17.79■□□□□ 0.44
Upf3aQ3ULJ3 Gm38186-201ENSMUST00000192574 449 ntTSL 3 BASIC17.79■□□□□ 0.44
Upf3aQ3ULJ3 Gm37280-201ENSMUST00000194583 375 ntTSL 3 BASIC17.79■□□□□ 0.44
Upf3aQ3ULJ3 Bpifa3-201ENSMUST00000028984 1107 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
Upf3aQ3ULJ3 Arfip2-202ENSMUST00000084782 2254 ntAPPRIS P2 TSL 5 BASIC17.79■□□□□ 0.44
Upf3aQ3ULJ3 Mtmr14-201ENSMUST00000113146 2676 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Upf3aQ3ULJ3 Gm43042-201ENSMUST00000198676 1820 ntTSL 5 BASIC17.79■□□□□ 0.44
Upf3aQ3ULJ3 Rilpl1-201ENSMUST00000062153 2249 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Upf3aQ3ULJ3 Adprh-201ENSMUST00000002923 1583 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Upf3aQ3ULJ3 Gm12359-201ENSMUST00000139017 1399 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Upf3aQ3ULJ3 Ssc4d-203ENSMUST00000111152 2745 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
Upf3aQ3ULJ3 Rab40c-207ENSMUST00000167626 2506 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Upf3aQ3ULJ3 Fhl3-201ENSMUST00000038684 1664 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Upf3aQ3ULJ3 Rtkn-203ENSMUST00000121093 2597 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
Upf3aQ3ULJ3 Gm12536-201ENSMUST00000129102 358 ntTSL 2 BASIC17.78■□□□□ 0.44
Upf3aQ3ULJ3 Gm13054-201ENSMUST00000154192 820 ntTSL 3 BASIC17.78■□□□□ 0.44
Upf3aQ3ULJ3 Gm18421-201ENSMUST00000204122 625 ntBASIC17.78■□□□□ 0.44
Upf3aQ3ULJ3 Smarcd2-201ENSMUST00000021052 2747 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Upf3aQ3ULJ3 Lrrc57-204ENSMUST00000102499 1961 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Upf3aQ3ULJ3 9930012K11Rik-205ENSMUST00000153871 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Upf3aQ3ULJ3 9930012K11Rik-201ENSMUST00000058240 1986 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
Upf3aQ3ULJ3 Abr-202ENSMUST00000072740 5394 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
Upf3aQ3ULJ3 Klf16-201ENSMUST00000038558 2674 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Upf3aQ3ULJ3 Rfesd-203ENSMUST00000179078 1436 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Upf3aQ3ULJ3 Tial1-201ENSMUST00000033135 1580 ntAPPRIS ALT1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Upf3aQ3ULJ3 Nin-203ENSMUST00000095666 7183 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
Upf3aQ3ULJ3 Scaf8-201ENSMUST00000076734 4869 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Upf3aQ3ULJ3 Bend4-204ENSMUST00000201972 8268 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
Upf3aQ3ULJ3 Gm8909-201ENSMUST00000040467 1357 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Upf3aQ3ULJ3 Prmt3-201ENSMUST00000032715 2507 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Upf3aQ3ULJ3 Bfsp2-201ENSMUST00000124310 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Upf3aQ3ULJ3 Nsmf-205ENSMUST00000114386 2685 ntTSL 5 BASIC17.77■□□□□ 0.44
Upf3aQ3ULJ3 Tm2d3-202ENSMUST00000065574 1478 ntAPPRIS P4 TSL 1 (best) BASIC17.77■□□□□ 0.44
Upf3aQ3ULJ3 Rimklb-201ENSMUST00000068242 4725 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Upf3aQ3ULJ3 Rprd1b-207ENSMUST00000152452 1910 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Upf3aQ3ULJ3 Hdgfl3-201ENSMUST00000026094 2865 ntAPPRIS ALT1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Upf3aQ3ULJ3 Kcnd3-202ENSMUST00000098761 7169 ntAPPRIS ALT1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Upf3aQ3ULJ3 Mansc4-201ENSMUST00000100780 1125 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Upf3aQ3ULJ3 Speg-202ENSMUST00000113587 1254 ntTSL 5 BASIC17.77■□□□□ 0.44
Upf3aQ3ULJ3 Gm15295-201ENSMUST00000139874 488 ntTSL 5 BASIC17.77■□□□□ 0.44
Upf3aQ3ULJ3 Platr15-201ENSMUST00000147128 768 ntTSL 5 BASIC17.77■□□□□ 0.44
Upf3aQ3ULJ3 2210408F21Rik-212ENSMUST00000152157 490 ntTSL 2 BASIC17.77■□□□□ 0.44
Upf3aQ3ULJ3 Aldoa-ps3-201ENSMUST00000217558 306 ntBASIC17.77■□□□□ 0.44
Upf3aQ3ULJ3 Olfr571-201ENSMUST00000061738 969 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
Upf3aQ3ULJ3 Btbd2-201ENSMUST00000003434 3026 ntAPPRIS P2 TSL 5 BASIC17.77■□□□□ 0.44
Upf3aQ3ULJ3 Dcps-202ENSMUST00000119847 1445 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Upf3aQ3ULJ3 Dock9-202ENSMUST00000100299 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Upf3aQ3ULJ3 Ttc34-203ENSMUST00000207854 4733 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
Upf3aQ3ULJ3 Prob1-203ENSMUST00000190196 4888 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
Retrieved 100 of 76,532 protein–RNA pairs in 45.4 ms