Protein–RNA interactions for Protein: Q07563

Col17a1, Collagen alpha-1(XVII) chain, mousemouse

Predictions only

Length 1,470 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col17a1Q07563 Lcn5-201ENSMUST00000028306 696 ntAPPRIS P4 TSL 1 (best) BASIC26.19■■□□□ 1.78
Col17a1Q07563 Med8-202ENSMUST00000073881 1052 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
Col17a1Q07563 Gm38308-201ENSMUST00000194934 1809 ntBASIC26.19■■□□□ 1.78
Col17a1Q07563 Adrb1-201ENSMUST00000038949 2491 ntAPPRIS P1 BASIC26.19■■□□□ 1.78
Col17a1Q07563 Hsd17b7-202ENSMUST00000111353 1446 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
Col17a1Q07563 Arfrp1-203ENSMUST00000127988 2447 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
Col17a1Q07563 Sgcd-201ENSMUST00000077221 1617 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
Col17a1Q07563 Fgf17-202ENSMUST00000227123 1336 ntBASIC26.18■■□□□ 1.78
Col17a1Q07563 Lcat-201ENSMUST00000038896 1342 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
Col17a1Q07563 Cnih3-202ENSMUST00000161880 1995 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
Col17a1Q07563 Ccl25-205ENSMUST00000127460 867 ntAPPRIS ALT2 TSL 5 BASIC26.18■■□□□ 1.78
Col17a1Q07563 Pfdn5-205ENSMUST00000166658 1062 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
Col17a1Q07563 Prrg2-207ENSMUST00000210500 922 ntAPPRIS ALT2 TSL 5 BASIC26.18■■□□□ 1.78
Col17a1Q07563 CT030161.3-201ENSMUST00000218235 367 ntTSL 3 BASIC26.18■■□□□ 1.78
Col17a1Q07563 AC155252.2-201ENSMUST00000226946 680 ntBASIC26.18■■□□□ 1.78
Col17a1Q07563 H2-Q10-201ENSMUST00000068291 1473 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
Col17a1Q07563 Sept7-201ENSMUST00000115272 2533 ntAPPRIS ALT1 TSL 5 BASIC26.18■■□□□ 1.78
Col17a1Q07563 9030624G23Rik-201ENSMUST00000101538 2245 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
Col17a1Q07563 Ccng2-201ENSMUST00000031331 2810 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
Col17a1Q07563 Golga7-202ENSMUST00000121783 1945 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
Col17a1Q07563 Ndufa5-202ENSMUST00000118558 315 ntTSL 2 BASIC26.17■■□□□ 1.78
Col17a1Q07563 Gm11767-201ENSMUST00000129379 493 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
Col17a1Q07563 Tspyl-ps-201ENSMUST00000220692 1117 ntBASIC26.17■■□□□ 1.78
Col17a1Q07563 AC126408.1-201ENSMUST00000225184 523 ntBASIC26.17■■□□□ 1.78
Col17a1Q07563 Fam162a-201ENSMUST00000004057 635 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
Col17a1Q07563 Tedc1-201ENSMUST00000049271 2441 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
Col17a1Q07563 Ascl2-201ENSMUST00000009392 1605 ntAPPRIS P2 TSL 1 (best) BASIC26.17■■□□□ 1.78
Col17a1Q07563 Pou2f2-206ENSMUST00000108418 1934 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
Col17a1Q07563 Bmpr1b-202ENSMUST00000098568 1910 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
Col17a1Q07563 Rnase10-202ENSMUST00000164632 1521 ntAPPRIS ALT2 TSL 1 (best) BASIC26.17■■□□□ 1.78
Col17a1Q07563 Gm10142-201ENSMUST00000179767 363 ntAPPRIS P1 BASIC26.17■■□□□ 1.78
Col17a1Q07563 Gm27244-201ENSMUST00000184260 380 ntTSL 5 BASIC26.17■■□□□ 1.78
Col17a1Q07563 Hnrnpa1l2-ps2-201ENSMUST00000022493 963 ntBASIC26.17■■□□□ 1.78
Col17a1Q07563 Nab2-201ENSMUST00000026469 2582 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
Col17a1Q07563 Fgfr3-202ENSMUST00000087820 2630 ntAPPRIS ALT2 TSL 5 BASIC26.16■■□□□ 1.78
Col17a1Q07563 Sh3yl1-202ENSMUST00000110880 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC26.16■■□□□ 1.78
Col17a1Q07563 Ccdc34-201ENSMUST00000028580 2070 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
Col17a1Q07563 Dhdds-203ENSMUST00000105886 1015 ntTSL 5 BASIC26.16■■□□□ 1.78
Col17a1Q07563 Slc25a11-201ENSMUST00000014750 1711 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
Col17a1Q07563 Spata3-209ENSMUST00000152501 743 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
Col17a1Q07563 Dnmt3a-ps1-201ENSMUST00000192011 1271 ntBASIC26.16■■□□□ 1.78
Col17a1Q07563 Gm6566-201ENSMUST00000221468 1171 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
Col17a1Q07563 AC154572.2-201ENSMUST00000225105 997 ntBASIC26.16■■□□□ 1.78
Col17a1Q07563 Rab3a-202ENSMUST00000110090 1375 ntAPPRIS P1 TSL 3 BASIC26.15■■□□□ 1.78
Col17a1Q07563 Hoxaas2-202ENSMUST00000155922 1567 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
Col17a1Q07563 Mageh1-201ENSMUST00000051484 1410 ntAPPRIS P1 BASIC26.15■■□□□ 1.78
Col17a1Q07563 Hbb-bh0-201ENSMUST00000124800 129 ntBASIC26.15■■□□□ 1.78
Col17a1Q07563 AC125350.2-201ENSMUST00000224737 727 ntBASIC26.15■■□□□ 1.78
Col17a1Q07563 Gm9789-201ENSMUST00000062524 397 ntAPPRIS P1 BASIC26.15■■□□□ 1.78
Col17a1Q07563 Gm34220-201ENSMUST00000223001 2709 ntBASIC26.15■■□□□ 1.78
Col17a1Q07563 Zfp655-206ENSMUST00000200039 1765 ntAPPRIS ALT1 TSL 1 (best) BASIC26.15■■□□□ 1.78
Col17a1Q07563 Fgf3-201ENSMUST00000105898 2299 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
Col17a1Q07563 Rasgrp2-206ENSMUST00000113472 2124 ntTSL 1 (best) BASIC26.14■■□□□ 1.78
Col17a1Q07563 Gm2694-204ENSMUST00000181898 1303 ntTSL 1 (best) BASIC26.14■■□□□ 1.78
Col17a1Q07563 Gm16976-202ENSMUST00000127408 1515 ntTSL 1 (best) BASIC26.14■■□□□ 1.78
Col17a1Q07563 Krt4-201ENSMUST00000023797 2132 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
Col17a1Q07563 A530058N18Rik-205ENSMUST00000143993 550 ntTSL 3 BASIC26.14■■□□□ 1.78
Col17a1Q07563 Rab40c-203ENSMUST00000164982 789 ntTSL 5 BASIC26.14■■□□□ 1.78
Col17a1Q07563 Ifi27-202ENSMUST00000076702 828 ntAPPRIS ALT2 TSL 1 (best) BASIC26.14■■□□□ 1.78
Col17a1Q07563 2810408A11Rik-203ENSMUST00000102580 1640 ntAPPRIS P3 TSL 1 (best) BASIC26.14■■□□□ 1.77
Col17a1Q07563 Hpcal4-202ENSMUST00000106246 1627 ntAPPRIS P1 TSL 5 BASIC26.14■■□□□ 1.77
Col17a1Q07563 Gm13332-201ENSMUST00000120451 1398 ntBASIC26.14■■□□□ 1.77
Col17a1Q07563 Gm7856-201ENSMUST00000117514 1493 ntBASIC26.14■■□□□ 1.77
Col17a1Q07563 Platr31-201ENSMUST00000180653 1466 ntTSL 1 (best) BASIC26.14■■□□□ 1.77
Col17a1Q07563 Cav2-201ENSMUST00000000058 2733 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.77
Col17a1Q07563 Ssx2ip-203ENSMUST00000106151 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC26.13■■□□□ 1.77
Col17a1Q07563 Raver2-202ENSMUST00000106955 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC26.13■■□□□ 1.77
Col17a1Q07563 Csnk1a1-210ENSMUST00000170862 2259 ntAPPRIS ALT1 TSL 5 BASIC26.13■■□□□ 1.77
Col17a1Q07563 4930515G01Rik-201ENSMUST00000173208 1247 ntBASIC26.13■■□□□ 1.77
Col17a1Q07563 Gm45612-201ENSMUST00000211320 160 ntBASIC26.13■■□□□ 1.77
Col17a1Q07563 Snx24-201ENSMUST00000025417 994 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
Col17a1Q07563 Qk-202ENSMUST00000097414 4658 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
Col17a1Q07563 Dnal4-201ENSMUST00000023055 1469 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
Col17a1Q07563 Trim45-202ENSMUST00000094048 1815 ntTSL 5 BASIC26.12■■□□□ 1.77
Col17a1Q07563 Dpys-202ENSMUST00000110306 2110 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
Col17a1Q07563 Dhrs7c-205ENSMUST00000168612 1108 ntAPPRIS P1 TSL 5 BASIC26.12■■□□□ 1.77
Col17a1Q07563 Cdk7-205ENSMUST00000225990 1159 ntBASIC26.12■■□□□ 1.77
Col17a1Q07563 H2-T23-201ENSMUST00000102678 1472 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
Col17a1Q07563 Arhgap44-202ENSMUST00000093001 2256 ntTSL 2 BASIC26.12■■□□□ 1.77
Col17a1Q07563 Slc35f5-201ENSMUST00000027580 2733 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
Col17a1Q07563 Nap1l1-201ENSMUST00000065917 1486 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
Col17a1Q07563 Tsc22d1-208ENSMUST00000142683 797 ntTSL 3 BASIC26.11■■□□□ 1.77
Col17a1Q07563 Gm20680-201ENSMUST00000176881 789 ntTSL 5 BASIC26.11■■□□□ 1.77
Col17a1Q07563 Gm44492-201ENSMUST00000197012 141 ntBASIC26.11■■□□□ 1.77
Col17a1Q07563 Ybx1-ps2-201ENSMUST00000201305 957 ntBASIC26.11■■□□□ 1.77
Col17a1Q07563 Gm7653-201ENSMUST00000214567 508 ntBASIC26.11■■□□□ 1.77
Col17a1Q07563 Thrsp-201ENSMUST00000043077 1277 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
Col17a1Q07563 3110002H16Rik-201ENSMUST00000025276 2170 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
Col17a1Q07563 Htatip2-201ENSMUST00000085272 1418 ntAPPRIS P3 TSL 1 (best) BASIC26.11■■□□□ 1.77
Col17a1Q07563 Mdh2-201ENSMUST00000019323 1456 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
Col17a1Q07563 Nr1h3-202ENSMUST00000111354 1738 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
Col17a1Q07563 Gm17968-201ENSMUST00000194902 784 ntBASIC26.11■■□□□ 1.77
Col17a1Q07563 Mt1-201ENSMUST00000034215 549 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
Col17a1Q07563 Lhb-201ENSMUST00000072453 678 ntAPPRIS P1 TSL 2 BASIC26.11■■□□□ 1.77
Col17a1Q07563 Tmem107-201ENSMUST00000075980 779 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
Col17a1Q07563 Pmpcb-201ENSMUST00000030882 1615 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
Col17a1Q07563 Hexa-201ENSMUST00000026262 1996 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
Col17a1Q07563 5330438D12Rik-201ENSMUST00000064101 2229 ntBASIC26.1■■□□□ 1.77
Col17a1Q07563 Gm27198-201ENSMUST00000184172 1517 ntTSL 1 (best) BASIC26.1■■□□□ 1.77
Col17a1Q07563 Pitx2-203ENSMUST00000106382 1757 ntTSL 1 (best) BASIC26.1■■□□□ 1.77
Retrieved 100 of 76,532 protein–RNA pairs in 56.7 ms