Protein–RNA interactions for Protein: P40224

Cxcl12, Stromal cell-derived factor 1, mousemouse

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cxcl12P40224 4933433G15Rik-201ENSMUST00000180533 1481 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Cxcl12P40224 Gm9917-202ENSMUST00000181099 1499 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Cxcl12P40224 Dynll2-204ENSMUST00000178105 2187 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Cxcl12P40224 Gm8909-203ENSMUST00000173353 1428 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
Cxcl12P40224 Tmem263-201ENSMUST00000095383 3616 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Cxcl12P40224 Elmo2-204ENSMUST00000103088 3052 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
Cxcl12P40224 Selenoh-201ENSMUST00000102646 783 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Cxcl12P40224 Qdpr-204ENSMUST00000120867 1234 ntTSL 5 BASIC17.47■□□□□ 0.39
Cxcl12P40224 2410004I01Rik-201ENSMUST00000138424 1187 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Cxcl12P40224 Gm13431-203ENSMUST00000147012 388 ntTSL 2 BASIC17.47■□□□□ 0.39
Cxcl12P40224 Chd3os-202ENSMUST00000151617 389 ntTSL 3 BASIC17.47■□□□□ 0.39
Cxcl12P40224 Tsfm-207ENSMUST00000152054 655 ntTSL 3 BASIC17.47■□□□□ 0.39
Cxcl12P40224 Gm26768-201ENSMUST00000181097 966 ntTSL 5 BASIC17.47■□□□□ 0.39
Cxcl12P40224 Gm27397-201ENSMUST00000184997 107 ntBASIC17.47■□□□□ 0.39
Cxcl12P40224 Selenoh-206ENSMUST00000189988 390 ntTSL 3 BASIC17.47■□□□□ 0.39
Cxcl12P40224 AC159641.1-201ENSMUST00000221117 177 ntTSL 3 BASIC17.47■□□□□ 0.39
Cxcl12P40224 Lrr1-203ENSMUST00000222520 767 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Cxcl12P40224 Ccdc24-201ENSMUST00000106422 1365 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Cxcl12P40224 Sco1-202ENSMUST00000108690 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Cxcl12P40224 9530068E07Rik-202ENSMUST00000109057 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Cxcl12P40224 Zfp644-204ENSMUST00000112696 5785 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
Cxcl12P40224 Phc2-202ENSMUST00000106079 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Cxcl12P40224 Vegfc-201ENSMUST00000033919 2449 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Cxcl12P40224 Yipf2-203ENSMUST00000180365 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Cxcl12P40224 Dip2c-203ENSMUST00000174552 8023 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Cxcl12P40224 Hpcal1-201ENSMUST00000071858 1526 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Cxcl12P40224 Lrfn4-201ENSMUST00000053597 3194 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Cxcl12P40224 Ripk2-201ENSMUST00000037035 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Cxcl12P40224 Rpap3-201ENSMUST00000023104 2260 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Cxcl12P40224 Slc30a9-201ENSMUST00000113676 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
Cxcl12P40224 2810425M01Rik-201ENSMUST00000180790 1850 ntTSL 5 BASIC17.46■□□□□ 0.39
Cxcl12P40224 Pced1a-202ENSMUST00000110277 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Cxcl12P40224 Krt23-201ENSMUST00000006969 1565 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Cxcl12P40224 AC131586.3-201ENSMUST00000228355 1367 ntBASIC17.46■□□□□ 0.39
Cxcl12P40224 Get4-202ENSMUST00000110878 1180 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
Cxcl12P40224 Evx1-202ENSMUST00000129243 1034 ntTSL 3 BASIC17.46■□□□□ 0.39
Cxcl12P40224 Tpt1-205ENSMUST00000142061 996 ntTSL 5 BASIC17.46■□□□□ 0.39
Cxcl12P40224 Gm11750-201ENSMUST00000146016 583 ntTSL 5 BASIC17.46■□□□□ 0.39
Cxcl12P40224 Ubl5-204ENSMUST00000160682 489 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
Cxcl12P40224 Csrp3-202ENSMUST00000167786 899 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Cxcl12P40224 Gm24513-201ENSMUST00000174964 138 ntBASIC17.46■□□□□ 0.39
Cxcl12P40224 Jpx-202ENSMUST00000182447 712 ntTSL 3 BASIC17.46■□□□□ 0.39
Cxcl12P40224 Gm44123-201ENSMUST00000204662 577 ntTSL 5 BASIC17.46■□□□□ 0.39
Cxcl12P40224 Fosb-206ENSMUST00000208446 1090 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Cxcl12P40224 Gm32050-201ENSMUST00000209793 638 ntTSL 3 BASIC17.46■□□□□ 0.39
Cxcl12P40224 5830454E08Rik-202ENSMUST00000213974 744 ntBASIC17.46■□□□□ 0.39
Cxcl12P40224 Gm40513-201ENSMUST00000217258 411 ntTSL 3 BASIC17.46■□□□□ 0.39
Cxcl12P40224 AC164441.1-201ENSMUST00000221369 1004 ntTSL 5 BASIC17.46■□□□□ 0.39
Cxcl12P40224 Gm40849-201ENSMUST00000222330 603 ntTSL 3 BASIC17.46■□□□□ 0.39
Cxcl12P40224 Rbfox2-207ENSMUST00000227533 1041 ntBASIC17.46■□□□□ 0.39
Cxcl12P40224 Lce1l-201ENSMUST00000054426 670 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Cxcl12P40224 Hist1h2ak-201ENSMUST00000074752 393 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
Cxcl12P40224 Psma5-201ENSMUST00000090569 1239 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Cxcl12P40224 Rgp1-203ENSMUST00000117140 1635 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Cxcl12P40224 Klhdc1-201ENSMUST00000063445 2620 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Cxcl12P40224 Madcam1-201ENSMUST00000020554 1436 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
Cxcl12P40224 Mef2d-202ENSMUST00000107558 1767 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Cxcl12P40224 Cpeb2-204ENSMUST00000166713 6846 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
Cxcl12P40224 Clcc1-203ENSMUST00000106613 3064 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Cxcl12P40224 Cxcl10-202ENSMUST00000118006 1353 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Cxcl12P40224 Snupn-201ENSMUST00000068856 1391 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Cxcl12P40224 Igfbpl1-201ENSMUST00000044297 2864 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Cxcl12P40224 Rhoc-202ENSMUST00000106787 959 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
Cxcl12P40224 Rpl39l-202ENSMUST00000121292 550 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
Cxcl12P40224 Msh3-205ENSMUST00000187424 666 ntTSL 2 BASIC17.45■□□□□ 0.38
Cxcl12P40224 Ap2s1-204ENSMUST00000205607 372 ntTSL 3 BASIC17.45■□□□□ 0.38
Cxcl12P40224 Gm36584-201ENSMUST00000209046 708 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Cxcl12P40224 AL731706.1-201ENSMUST00000227806 944 ntAPPRIS ALT2 BASIC17.45■□□□□ 0.38
Cxcl12P40224 Fem1c-201ENSMUST00000036226 5726 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Cxcl12P40224 Hnrnph3-201ENSMUST00000020263 2213 ntAPPRIS P3 TSL 5 BASIC17.45■□□□□ 0.38
Cxcl12P40224 Trim63-202ENSMUST00000105875 1886 ntAPPRIS P2 TSL 5 BASIC17.45■□□□□ 0.38
Cxcl12P40224 Cnih1-201ENSMUST00000015903 1538 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Cxcl12P40224 Abhd13-201ENSMUST00000048216 5074 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Cxcl12P40224 Sfrp4-201ENSMUST00000002883 1764 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Cxcl12P40224 Tmem179-201ENSMUST00000066791 2380 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Cxcl12P40224 Wdr41-202ENSMUST00000159647 2289 ntTSL 5 BASIC17.45■□□□□ 0.38
Cxcl12P40224 Wdr41-206ENSMUST00000167155 2289 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Cxcl12P40224 Nxn-201ENSMUST00000021204 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Cxcl12P40224 Il11ra1-202ENSMUST00000108040 1837 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
Cxcl12P40224 Gm4675-202ENSMUST00000164755 2322 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Cxcl12P40224 Nkapl-201ENSMUST00000068235 1463 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
Cxcl12P40224 Paxip1-201ENSMUST00000002291 5850 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Cxcl12P40224 Zfp655-206ENSMUST00000200039 1765 ntAPPRIS ALT1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Cxcl12P40224 Cnn2-202ENSMUST00000105374 926 ntTSL 5 BASIC17.44■□□□□ 0.38
Cxcl12P40224 B9d2-201ENSMUST00000108403 1021 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Cxcl12P40224 Gdap1l1-203ENSMUST00000109421 1206 ntAPPRIS ALT1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Cxcl12P40224 Nptn-211ENSMUST00000177064 582 ntTSL 5 BASIC17.44■□□□□ 0.38
Cxcl12P40224 Gm10576-201ENSMUST00000191927 825 ntBASIC17.44■□□□□ 0.38
Cxcl12P40224 Gm16845-202ENSMUST00000216270 567 ntTSL 2 BASIC17.44■□□□□ 0.38
Cxcl12P40224 Lce3f-201ENSMUST00000090863 611 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Cxcl12P40224 3110002H16Rik-201ENSMUST00000025276 2170 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Cxcl12P40224 Nucb2-201ENSMUST00000032895 1685 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Cxcl12P40224 Casp8-204ENSMUST00000191201 1849 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
Cxcl12P40224 Wnt10b-203ENSMUST00000226610 2217 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
Cxcl12P40224 Fst-202ENSMUST00000223640 2612 ntBASIC17.44■□□□□ 0.38
Cxcl12P40224 Pgrmc1-201ENSMUST00000073339 1857 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Cxcl12P40224 Gm5784-201ENSMUST00000179344 2478 ntBASIC17.43■□□□□ 0.38
Cxcl12P40224 A530016L24Rik-202ENSMUST00000223266 1547 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Cxcl12P40224 C630004M23Rik-201ENSMUST00000194765 1682 ntBASIC17.43■□□□□ 0.38
Cxcl12P40224 Psme3-201ENSMUST00000019470 2664 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Retrieved 100 of 76,532 protein–RNA pairs in 21.7 ms