Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Elp6-205ENSMUST00000199592 1304 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
Col18a1P39061 Sephs1-202ENSMUST00000115019 2933 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
Col18a1P39061 Gm15598-201ENSMUST00000156965 763 ntTSL 5 BASIC22.66■■□□□ 1.22
Col18a1P39061 1110035H17Rik-202ENSMUST00000205672 1231 ntBASIC22.66■■□□□ 1.22
Col18a1P39061 Gm15500-202ENSMUST00000071641 1019 ntBASIC22.66■■□□□ 1.22
Col18a1P39061 Mettl21a-202ENSMUST00000114079 2030 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
Col18a1P39061 C630004M23Rik-201ENSMUST00000194765 1682 ntBASIC22.65■■□□□ 1.22
Col18a1P39061 Jam2-201ENSMUST00000098407 1998 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
Col18a1P39061 Meox1-201ENSMUST00000057054 2228 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
Col18a1P39061 Igsf8-202ENSMUST00000085912 2182 ntAPPRIS P1 TSL 5 BASIC22.65■■□□□ 1.22
Col18a1P39061 Kctd9-201ENSMUST00000078053 3157 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
Col18a1P39061 Tcp11-202ENSMUST00000043925 1746 ntAPPRIS ALT2 TSL 5 BASIC22.65■■□□□ 1.22
Col18a1P39061 Nab2-201ENSMUST00000026469 2582 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
Col18a1P39061 Meig1-204ENSMUST00000115083 567 ntAPPRIS P1 TSL 2 BASIC22.65■■□□□ 1.22
Col18a1P39061 Rhox7b-201ENSMUST00000115156 1091 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
Col18a1P39061 Egfl7-216ENSMUST00000174211 1163 ntAPPRIS P4 TSL 1 (best) BASIC22.65■■□□□ 1.22
Col18a1P39061 Vsig2-206ENSMUST00000215957 851 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
Col18a1P39061 Rnf7-202ENSMUST00000071301 334 ntTSL 2 BASIC22.65■■□□□ 1.22
Col18a1P39061 Rhox7a-201ENSMUST00000096454 983 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
Col18a1P39061 4930455H04Rik-201ENSMUST00000117592 1341 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
Col18a1P39061 Gm43545-201ENSMUST00000196765 2779 ntBASIC22.64■■□□□ 1.22
Col18a1P39061 Cdca4-202ENSMUST00000220899 1994 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
Col18a1P39061 Minpp1-201ENSMUST00000025827 2619 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
Col18a1P39061 Qsox2-201ENSMUST00000036187 2559 ntAPPRIS P1 TSL 5 BASIC22.64■■□□□ 1.22
Col18a1P39061 Iars2-203ENSMUST00000110975 2801 ntTSL 5 BASIC22.64■■□□□ 1.22
Col18a1P39061 Gm4913-201ENSMUST00000117075 1290 ntBASIC22.64■■□□□ 1.22
Col18a1P39061 Hmgb1-208ENSMUST00000139443 923 ntTSL 2 BASIC22.64■■□□□ 1.22
Col18a1P39061 Spr-201ENSMUST00000045986 1230 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
Col18a1P39061 Timm10b-201ENSMUST00000058333 694 ntAPPRIS P2 TSL 1 (best) BASIC22.64■■□□□ 1.22
Col18a1P39061 Slc1a6-201ENSMUST00000005490 2029 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
Col18a1P39061 Bfsp2-201ENSMUST00000124310 1662 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
Col18a1P39061 Gm37500-201ENSMUST00000192059 1443 ntBASIC22.64■■□□□ 1.21
Col18a1P39061 Cpt2-203ENSMUST00000106720 1015 ntTSL 2 BASIC22.63■■□□□ 1.21
Col18a1P39061 Tcp1-207ENSMUST00000143961 614 ntTSL 2 BASIC22.63■■□□□ 1.21
Col18a1P39061 BC048679-202ENSMUST00000144156 640 ntAPPRIS ALT2 TSL 1 (best) BASIC22.63■■□□□ 1.21
Col18a1P39061 Retsat-204ENSMUST00000176168 1203 ntTSL 5 BASIC22.63■■□□□ 1.21
Col18a1P39061 Gdpd3-201ENSMUST00000032944 1148 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
Col18a1P39061 Hnrnpl-211ENSMUST00000174548 2679 ntAPPRIS P1 TSL 5 BASIC22.63■■□□□ 1.21
Col18a1P39061 Rassf1-202ENSMUST00000093786 1787 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
Col18a1P39061 Gm3928-201ENSMUST00000121141 1307 ntBASIC22.63■■□□□ 1.21
Col18a1P39061 Siva1-202ENSMUST00000109755 333 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
Col18a1P39061 Ankrd39-201ENSMUST00000001172 2109 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
Col18a1P39061 Gm7222-201ENSMUST00000117512 906 ntBASIC22.63■■□□□ 1.21
Col18a1P39061 1810008I18Rik-202ENSMUST00000187848 819 ntTSL 3 BASIC22.63■■□□□ 1.21
Col18a1P39061 Gm44945-201ENSMUST00000206764 1187 ntBASIC22.63■■□□□ 1.21
Col18a1P39061 D530014G21Rik-201ENSMUST00000208416 587 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
Col18a1P39061 Krtap9-3-201ENSMUST00000062683 759 ntAPPRIS P1 BASIC22.63■■□□□ 1.21
Col18a1P39061 Dmrt2-201ENSMUST00000053068 2347 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
Col18a1P39061 Fam3a-206ENSMUST00000114143 1899 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
Col18a1P39061 Otub1-202ENSMUST00000123594 1728 ntTSL 5 BASIC22.62■■□□□ 1.21
Col18a1P39061 Pcp2-205ENSMUST00000142431 524 ntTSL 2 BASIC22.62■■□□□ 1.21
Col18a1P39061 Dnmt3a-ps1-201ENSMUST00000192011 1271 ntBASIC22.62■■□□□ 1.21
Col18a1P39061 5730507C01Rik-202ENSMUST00000177778 2542 ntAPPRIS ALT2 TSL 1 (best) BASIC22.62■■□□□ 1.21
Col18a1P39061 Glmn-201ENSMUST00000078021 2015 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
Col18a1P39061 Glrx5-201ENSMUST00000021522 2925 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
Col18a1P39061 Psmb5-ps-201ENSMUST00000119744 798 ntBASIC22.61■■□□□ 1.21
Col18a1P39061 1700086L19Rik-201ENSMUST00000095617 706 ntBASIC22.61■■□□□ 1.21
Col18a1P39061 Cyb5r4-201ENSMUST00000168529 2644 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
Col18a1P39061 A530010L16Rik-201ENSMUST00000212007 2336 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
Col18a1P39061 Gatc-201ENSMUST00000139167 1797 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
Col18a1P39061 Phb2-201ENSMUST00000004375 1318 ntAPPRIS P1 TSL 5 BASIC22.61■■□□□ 1.21
Col18a1P39061 Kif1bp-202ENSMUST00000159704 2622 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
Col18a1P39061 Gfra2-202ENSMUST00000227633 1480 ntBASIC22.61■■□□□ 1.21
Col18a1P39061 Gm12689-201ENSMUST00000094955 1359 ntAPPRIS P1 BASIC22.61■■□□□ 1.21
Col18a1P39061 Adprm-201ENSMUST00000116363 1283 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
Col18a1P39061 Rpl36-ps8-201ENSMUST00000121187 315 ntBASIC22.61■■□□□ 1.21
Col18a1P39061 Nup188-205ENSMUST00000138666 534 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
Col18a1P39061 Olfr30-201ENSMUST00000055204 1066 ntAPPRIS P1 BASIC22.61■■□□□ 1.21
Col18a1P39061 Ppp6r2-202ENSMUST00000226221 2559 ntBASIC22.6■■□□□ 1.21
Col18a1P39061 Gde1-201ENSMUST00000038791 1582 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
Col18a1P39061 Dnal4-201ENSMUST00000023055 1469 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
Col18a1P39061 Ano10-206ENSMUST00000216670 2108 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
Col18a1P39061 Nbn-201ENSMUST00000029879 2533 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
Col18a1P39061 Sfrp2-201ENSMUST00000029625 2003 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
Col18a1P39061 Gm26718-201ENSMUST00000181048 1378 ntTSL 5 BASIC22.6■■□□□ 1.21
Col18a1P39061 Gm3248-201ENSMUST00000163885 2055 ntAPPRIS P1 TSL 5 BASIC22.6■■□□□ 1.21
Col18a1P39061 Fis1-202ENSMUST00000111094 948 ntTSL 2 BASIC22.6■■□□□ 1.21
Col18a1P39061 Tsc22d1-208ENSMUST00000142683 797 ntTSL 3 BASIC22.6■■□□□ 1.21
Col18a1P39061 AC114585.2-202ENSMUST00000228094 426 ntBASIC22.6■■□□□ 1.21
Col18a1P39061 Gm8784-201ENSMUST00000222096 1435 ntBASIC22.6■■□□□ 1.21
Col18a1P39061 Vrk2-201ENSMUST00000078362 1889 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
Col18a1P39061 Fst-202ENSMUST00000223640 2612 ntBASIC22.59■■□□□ 1.21
Col18a1P39061 AC125311.2-201ENSMUST00000227477 1940 ntBASIC22.59■■□□□ 1.21
Col18a1P39061 Gm14701-201ENSMUST00000117156 348 ntBASIC22.59■■□□□ 1.21
Col18a1P39061 AC158804.1-201ENSMUST00000219046 541 ntTSL 3 BASIC22.59■■□□□ 1.21
Col18a1P39061 AC124549.3-201ENSMUST00000225541 367 ntBASIC22.59■■□□□ 1.21
Col18a1P39061 Cebpa-201ENSMUST00000042985 2626 ntAPPRIS P1 BASIC22.59■■□□□ 1.21
Col18a1P39061 Klk14-201ENSMUST00000056329 1271 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
Col18a1P39061 Ism1-201ENSMUST00000099307 2944 ntTSL 5 BASIC22.59■■□□□ 1.21
Col18a1P39061 Ing4-201ENSMUST00000032480 1629 ntAPPRIS P2 TSL 1 (best) BASIC22.59■■□□□ 1.21
Col18a1P39061 Gm10419-203ENSMUST00000197854 653 ntTSL 5 BASIC22.58■■□□□ 1.21
Col18a1P39061 Ager-209ENSMUST00000174496 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC22.58■■□□□ 1.21
Col18a1P39061 H2-Q7-202ENSMUST00000076256 1523 ntAPPRIS ALT2 TSL 5 BASIC22.58■■□□□ 1.21
Col18a1P39061 Gm11373-201ENSMUST00000129791 2819 ntTSL 5 BASIC22.58■■□□□ 1.21
Col18a1P39061 Ube2d2a-201ENSMUST00000167406 2393 ntAPPRIS P1 TSL 5 BASIC22.58■■□□□ 1.2
Col18a1P39061 Tbx20-202ENSMUST00000166018 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC22.58■■□□□ 1.2
Col18a1P39061 Gm16156-201ENSMUST00000141168 713 ntTSL 3 BASIC22.58■■□□□ 1.2
Col18a1P39061 Dad1-201ENSMUST00000022781 878 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.2
Col18a1P39061 9430038I01Rik-201ENSMUST00000068996 1126 ntAPPRIS P2 TSL 1 (best) BASIC22.58■■□□□ 1.2
Col18a1P39061 Tal1-204ENSMUST00000162489 2894 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.2
Retrieved 100 of 76,532 protein–RNA pairs in 31.9 ms