Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Cdv3-202ENSMUST00000072249 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
Chmp6P0C0A3 Gm10830-201ENSMUST00000186379 636 ntTSL 5 BASIC18.48■□□□□ 0.55
Chmp6P0C0A3 Gm42884-202ENSMUST00000202523 423 ntTSL 3 BASIC18.48■□□□□ 0.55
Chmp6P0C0A3 4933406B15Rik-201ENSMUST00000220065 1182 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Chmp6P0C0A3 Ptpdc1-201ENSMUST00000035824 4402 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
Chmp6P0C0A3 Git2-215ENSMUST00000178440 4944 ntTSL 5 BASIC18.48■□□□□ 0.55
Chmp6P0C0A3 Git2-201ENSMUST00000043283 4938 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Chmp6P0C0A3 Zfp764-201ENSMUST00000059199 2508 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Chmp6P0C0A3 Spock1-201ENSMUST00000172326 1320 ntAPPRIS P3 TSL 5 BASIC18.48■□□□□ 0.55
Chmp6P0C0A3 Polr1c-201ENSMUST00000087026 1314 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Chmp6P0C0A3 Fbxo33-201ENSMUST00000043204 3688 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Chmp6P0C0A3 Gm43272-201ENSMUST00000200599 1584 ntBASIC18.47■□□□□ 0.55
Chmp6P0C0A3 4930426L09Rik-201ENSMUST00000028069 1459 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
Chmp6P0C0A3 Gm42417-201ENSMUST00000191849 2256 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Chmp6P0C0A3 Scamp4-201ENSMUST00000079883 1804 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Chmp6P0C0A3 Gm12979-201ENSMUST00000145488 405 ntTSL 2 BASIC18.47■□□□□ 0.55
Chmp6P0C0A3 Mir7071-201ENSMUST00000184847 69 ntBASIC18.47■□□□□ 0.55
Chmp6P0C0A3 Rps2-ps2-201ENSMUST00000194305 881 ntBASIC18.47■□□□□ 0.55
Chmp6P0C0A3 4932443I19Rik-204ENSMUST00000214337 1212 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
Chmp6P0C0A3 Lysmd2-201ENSMUST00000034702 1189 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Chmp6P0C0A3 Grhpr-201ENSMUST00000045078 1280 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Chmp6P0C0A3 Pigu-201ENSMUST00000077626 1636 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
Chmp6P0C0A3 Rasal2-201ENSMUST00000078308 10047 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
Chmp6P0C0A3 Sapcd2-202ENSMUST00000100323 1761 ntAPPRIS ALT2 TSL 2 BASIC18.47■□□□□ 0.55
Chmp6P0C0A3 Zscan25-201ENSMUST00000094116 1796 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Chmp6P0C0A3 Amigo2-201ENSMUST00000053106 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Chmp6P0C0A3 Dnajb9-201ENSMUST00000015049 2461 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Chmp6P0C0A3 Gaa-202ENSMUST00000106258 1369 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Chmp6P0C0A3 Fxyd1-208ENSMUST00000205807 539 ntTSL 3 BASIC18.46■□□□□ 0.55
Chmp6P0C0A3 Lce1m-201ENSMUST00000029520 874 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Chmp6P0C0A3 Pigl-201ENSMUST00000014389 2174 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Chmp6P0C0A3 Gas2-201ENSMUST00000051912 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Chmp6P0C0A3 Pex6-201ENSMUST00000002840 3200 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Chmp6P0C0A3 Aig1-201ENSMUST00000019942 1439 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Chmp6P0C0A3 Cacna1b-204ENSMUST00000102939 9736 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
Chmp6P0C0A3 Mipol1-201ENSMUST00000123498 2117 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
Chmp6P0C0A3 Gm16759-204ENSMUST00000191455 4272 ntTSL 5 BASIC18.46■□□□□ 0.54
Chmp6P0C0A3 Tm7sf3-201ENSMUST00000037709 3241 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Chmp6P0C0A3 Sh3yl1-202ENSMUST00000110880 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
Chmp6P0C0A3 D17Wsu92e-203ENSMUST00000114863 3828 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
Chmp6P0C0A3 Camsap2-203ENSMUST00000192314 4916 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
Chmp6P0C0A3 A930001A20Rik-201ENSMUST00000182586 1366 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Chmp6P0C0A3 Podxl2-201ENSMUST00000038409 1994 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
Chmp6P0C0A3 Mpz-202ENSMUST00000111334 1278 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Chmp6P0C0A3 Prlh-201ENSMUST00000166281 276 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Chmp6P0C0A3 9930021J03Rik-204ENSMUST00000177155 6632 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
Chmp6P0C0A3 Vps53-202ENSMUST00000094015 2645 ntTSL 5 BASIC18.45■□□□□ 0.54
Chmp6P0C0A3 Mff-208ENSMUST00000160786 1645 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Chmp6P0C0A3 Sh3bp1-201ENSMUST00000001226 2510 ntTSL 5 BASIC18.45■□□□□ 0.54
Chmp6P0C0A3 Xpr1-202ENSMUST00000111774 2753 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Chmp6P0C0A3 Cul4a-201ENSMUST00000016680 3728 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Chmp6P0C0A3 Prps1l3-201ENSMUST00000139049 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Chmp6P0C0A3 Ppfibp1-201ENSMUST00000016631 4851 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
Chmp6P0C0A3 Plppr5-202ENSMUST00000106473 4294 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Chmp6P0C0A3 Taf6l-205ENSMUST00000176496 2224 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Chmp6P0C0A3 Sap18-201ENSMUST00000111267 660 ntTSL 2 BASIC18.44■□□□□ 0.54
Chmp6P0C0A3 Nmnat3-203ENSMUST00000112938 848 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Chmp6P0C0A3 2210408F21Rik-213ENSMUST00000153057 652 ntTSL 3 BASIC18.44■□□□□ 0.54
Chmp6P0C0A3 Gm16105-201ENSMUST00000156926 697 ntTSL 3 BASIC18.44■□□□□ 0.54
Chmp6P0C0A3 Khdc3-204ENSMUST00000173734 1228 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
Chmp6P0C0A3 Gm20403-201ENSMUST00000173803 372 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
Chmp6P0C0A3 Sae1-203ENSMUST00000210999 1254 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Chmp6P0C0A3 Rps28-201ENSMUST00000087342 392 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Chmp6P0C0A3 AC125311.2-201ENSMUST00000227477 1940 ntBASIC18.44■□□□□ 0.54
Chmp6P0C0A3 Zbtb32-202ENSMUST00000108151 1775 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
Chmp6P0C0A3 Shisa7-201ENSMUST00000066041 6006 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
Chmp6P0C0A3 Rfx7-202ENSMUST00000163401 7880 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
Chmp6P0C0A3 Cbarp-201ENSMUST00000105369 3121 ntAPPRIS P2 TSL 5 BASIC18.44■□□□□ 0.54
Chmp6P0C0A3 Commd7-202ENSMUST00000109782 1343 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Chmp6P0C0A3 Tubb4b-ps1-201ENSMUST00000179460 1336 ntBASIC18.44■□□□□ 0.54
Chmp6P0C0A3 Celf1-201ENSMUST00000005643 4830 ntAPPRIS P4 TSL 5 BASIC18.44■□□□□ 0.54
Chmp6P0C0A3 Tgds-201ENSMUST00000022727 1682 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Chmp6P0C0A3 Cct8-201ENSMUST00000026704 2394 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Chmp6P0C0A3 Tead3-205ENSMUST00000154873 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
Chmp6P0C0A3 Gprc5b-201ENSMUST00000008878 4518 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
Chmp6P0C0A3 Atxn7l2-204ENSMUST00000119650 2274 ntTSL 5 BASIC18.43■□□□□ 0.54
Chmp6P0C0A3 Krt6a-201ENSMUST00000023788 2256 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Chmp6P0C0A3 Slc7a5-201ENSMUST00000045557 3517 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Chmp6P0C0A3 Agrn-206ENSMUST00000180572 6891 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
Chmp6P0C0A3 Mapkapk3-201ENSMUST00000035194 2816 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Chmp6P0C0A3 Aurkb-201ENSMUST00000021277 1950 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Chmp6P0C0A3 Baz1a-205ENSMUST00000173433 5788 ntAPPRIS P2 TSL 5 BASIC18.43■□□□□ 0.54
Chmp6P0C0A3 BC029722-201ENSMUST00000124586 1615 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Chmp6P0C0A3 Tmem198-202ENSMUST00000113575 2185 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Chmp6P0C0A3 Hilpda-202ENSMUST00000115289 658 ntAPPRIS P1 TSL 3 BASIC18.43■□□□□ 0.54
Chmp6P0C0A3 Nrn1-202ENSMUST00000122286 691 ntTSL 3 BASIC18.43■□□□□ 0.54
Chmp6P0C0A3 Gm16120-201ENSMUST00000127990 808 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Chmp6P0C0A3 Gm19426-201ENSMUST00000181711 726 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
Chmp6P0C0A3 Krtap5-1-202ENSMUST00000188274 742 ntBASIC18.43■□□□□ 0.54
Chmp6P0C0A3 Krt88-201ENSMUST00000023781 903 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Chmp6P0C0A3 Pfdn4-201ENSMUST00000063682 935 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Chmp6P0C0A3 Gdpd5-201ENSMUST00000037528 4611 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Chmp6P0C0A3 Vps37a-201ENSMUST00000098817 6379 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Chmp6P0C0A3 Espnl-201ENSMUST00000088904 5445 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Chmp6P0C0A3 Ggt6-202ENSMUST00000100903 1387 ntTSL 5 BASIC18.42■□□□□ 0.54
Chmp6P0C0A3 Gm2788-202ENSMUST00000147173 1390 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Chmp6P0C0A3 Camk2n1-201ENSMUST00000050918 4444 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Chmp6P0C0A3 Tcf7l2-203ENSMUST00000111646 2839 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Chmp6P0C0A3 Serac1-201ENSMUST00000024570 2033 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
Chmp6P0C0A3 Gm6093-201ENSMUST00000221792 1623 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Retrieved 100 of 76,532 protein–RNA pairs in 21.1 ms